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28<meta name="readthedocs-project-slug" content="fmriprep" /><meta name="readthedocs-version-slug" content="stable" /><meta name="readthedocs-resolver-filename" content="/" /><meta name="readthedocs-http-status" content="200" /></head> 29 30<body class="wy-body-for-nav"> 31 <div class="wy-grid-for-nav"> 32 <nav data-toggle="wy-nav-shift" class="wy-nav-side"> 33 <div class="wy-side-scroll"> 34 <div class="wy-side-nav-search" > 35 36 37 38 <a href="#" class="icon icon-home"> 39 fmriprep 40 </a> 41 <div class="switch-menus"> 42 <div class="version-switch"></div> 43 <div class="language-switch"></div> 44 </div> 45<div role="search"> 46 <form id="rtd-search-form" class="wy-form" action="search.html" method="get"> 47 <input type="text" name="q" placeholder="Search docs" aria-label="Search docs" /> 48 <input type="hidden" name="check_keywords" value="yes" /> 49 <input type="hidden" name="area" value="default" /> 50 </form> 51</div> 52 </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu"> 53 <ul> 54<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a></li> 55<li class="toctree-l1"><a class="reference internal" href="usage.html">Usage Notes</a></li> 56<li class="toctree-l1"><a class="reference internal" href="workflows.html">Processing pipeline details</a></li> 57<li class="toctree-l1"><a class="reference internal" href="outputs.html">Outputs of <em>fMRIPrep</em></a></li> 58<li class="toctree-l1"><a class="reference internal" href="benchmarks.html">Performance benchmarks</a></li> 59<li class="toctree-l1"><a class="reference internal" href="spaces.html">Defining standard and nonstandard spaces where data will be resampled</a></li> 60<li class="toctree-l1"><a class="reference internal" href="faq.html">FAQ - Frequently Asked Questions</a></li> 61<li class="toctree-l1"><a class="reference internal" href="api.html">Developers - API</a></li> 62<li class="toctree-l1"><a class="reference internal" href="changes.html">Whatâs new</a></li> 63</ul> 64 65 </div> 66 </div> 67 </nav> 68 69 <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"><nav class="wy-nav-top" aria-label="Mobile navigation menu" > 70 <i data-toggle="wy-nav-top" class="fa fa-bars"></i> 71 <a href="#">fmriprep</a> 72 </nav> 73 74 <div class="wy-nav-content"> 75 <div class="rst-content"> 76 <div role="navigation" aria-label="Page navigation"> 77 <ul class="wy-breadcrumbs"> 78 <li><a href="#" class="icon icon-home" aria-label="Home"></a></li> 79 <li class="breadcrumb-item active"><em>fMRIPrep</em>: A Robust Preprocessing Pipeline for fMRI Data</li> 80 <li class="wy-breadcrumbs-aside"> 81 <a href="_sources/index.rst.txt" rel="nofollow"> View page source</a> 82 </li> 83 </ul> 84 <hr/> 85</div> 86 <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> 87 <div itemprop="articleBody"> 88 89 <section id="fmriprep-a-robust-preprocessing-pipeline-for-fmri-data"> 90<h1><em>fMRIPrep</em>: A Robust Preprocessing Pipeline for fMRI Data<a class="headerlink" href="#fmriprep-a-robust-preprocessing-pipeline-for-fmri-data" title="Link to this heading">ï</a></h1> 91<p><em>fMRIPrep</em> is a <em>NiPreps (NeuroImaging PREProcessing toolS)</em> application 92(<a class="reference external" href="https://www.nipreps.org">www.nipreps.org</a>) for the preprocessing of 93task-based and resting-state functional MRI (fMRI).</p> 94<a class="reference external image-reference" href="https://doi.org/10.1038/s41592-018-0235-4"><img alt="RRID:SCR_016216" src="https://img.shields.io/badge/RRID-SCR__016216-blue.svg" /> 95</a> 96<a class="reference external image-reference" href="https://pypi.python.org/pypi/fmriprep/"><img alt="Latest Version" src="https://img.shields.io/pypi/v/fmriprep.svg" /> 97</a> 98<a class="reference external image-reference" href="https://circleci.com/gh/nipreps/fmriprep/tree/master"><img alt="https://circleci.com/gh/nipreps/fmriprep/tree/master.svg?style=shield" src="https://circleci.com/gh/nipreps/fmriprep/tree/master.svg?style=shield" /> 99</a> 100<a class="reference external image-reference" href="https://fmriprep.org/en/latest/?badge=latest"><img alt="Documentation Status" src="https://readthedocs.org/projects/fmriprep/badge/?ver
100sion=latest" /> 101</a> 102<a class="reference external image-reference" href="https://doi.org/10.1038/s41592-018-0235-4"><img alt="Published in Nature Methods" src="https://img.shields.io/badge/doi-10.1038%2Fs41592--018--0235--4-blue.svg" /> 103</a> 104<a class="reference external image-reference" href="https://hub.docker.com/r/nipreps/fmriprep/tags/"><img alt="Docker image available!" src="https://img.shields.io/badge/docker-nipreps/fmriprep-brightgreen.svg?logo=docker&style=flat" /> 105</a> 106<a class="reference external image-reference" href="https://doi.org/10.24433/CO.ed5ddfef-76a3-4996-b298-e3200f69141b"><img alt="Available in CodeOcean!" src="https://codeocean.com/codeocean-assets/badge/open-in-code-ocean.svg" /> 107</a> 108<a class="reference external image-reference" href="https://czi.co/EOSS"><img alt="CZI's Essential Open Source Software for Science" src="https://chanzuckerberg.github.io/open-science/badges/CZI-EOSS.svg" /> 109</a> 110<section id="about"> 111<h2>About<a class="headerlink" href="#about" title="Link to this heading">ï</a></h2> 112<img alt="https://github.com/oesteban/fmriprep/raw/f4c7a9804be26c912b24ef4dccba54bdd72fa1fd/docs/_static/fmriprep-21.0.0.svg" src="https://github.com/oesteban/fmriprep/raw/f4c7a9804be26c912b24ef4dccba54bdd72fa1fd/docs/_static/fmriprep-21.0.0.svg" /> 113<p><em>fMRIPrep</em> is a functional magnetic resonance imaging (fMRI) data 114preprocessing pipeline that is designed to provide an easily accessible, 115state-of-the-art interface that is robust to variations in scan acquisition 116protocols and that requires minimal user input, while providing easily 117interpretable and comprehensive error and output reporting. 118It performs basic processing steps (coregistration, normalization, unwarping, 119noise component extraction, segmentation, skull-stripping, etc.) providing 120outputs that can be easily submitted to a variety of group level analyses, 121including task-based or resting-state fMRI, graph theory measures, and surface 122or volume-based statistics.</p> 123<div class="admonition note"> 124<p class="admonition-title">Note</p> 125<p><em>fMRIPrep</em> performs minimal preprocessing. 126Here we define âminimal preprocessingâ as motion correction, field
127unwarping, normalization, bias field correction, and brain extraction. 128See the <a class="reference external" href="https://fmriprep.readthedocs.io/en/latest/workflows.html">workflows section of our documentation</a> for more details.</p> 129</div> 130<p>The <em>fMRIPrep</em> pipeline uses a combination of tools from well-known software 131packages, including <a class="reference external" href="https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/">FSL</a>, <a class="reference external" href="https://stnava.github.io/ANTs/">ANTs</a>, <a class="reference external" href="https://surfer.nmr.mgh.harvard.edu/">FreeSurfer</a> and <a class="reference external" href="https://afni.nimh.nih.gov/">AFNI</a>. 132This pipeline was designed to provide the best software implementation for each 133state of preprocessing, and will be updated as newer and better neuroimaging 134software become available.</p> 135<p>This tool allows you to easily do the following:</p> 136<ul class="simple"> 137<li><p>Take fMRI data from raw to fully preprocessed form.</p></li> 138<li><p>Implement tools from different software packages.</p></li> 139<li><p>Achieve optimal data processing quality by using the best tools available.</p></li> 140<li><p>Generate preprocessing quality reports, with which the user can easily 141identify outliers.</p></li> 142<li><p>Receive verbose output concerning the stage of preprocessing for each 143subject, including meaningful errors.</p></li> 144<li><p>Automate and parallelize processing steps, which provides a significant 145speed-up from manual processing or shell-scripted pipelines.</p></li> 146</ul> 147<p>More information and documentation can be found at 148<a class="reference external" href="https://fmriprep.readthedocs.io/">https://fmriprep.readthedocs.io/</a></p> 149</section> 150<section id="principles"> 151<h2>Principles<a class="headerlink" href="#principles" title="Link to this heading">ï</a></h2> 152<p><em>fMRIPrep</em> is built around three principles:</p> 153<ol class="arabic simple"> 154<li><p><strong>Robustness</strong> - The pipeline adapts the preprocessing steps depending on 155the input dataset and should provide results as good as possible 156independently of scanner make, scanning parameters or presence of additional 157correction scans (such as fieldmaps).</p></li> 158<li><p><strong>Ease of use</strong> - Thanks to dependence on the BIDS standard, manual 159parameter input is reduced to a minimum, allowing the pipeline to run in an 160automatic fashion.</p></li> 161<li><p><strong>âGlass boxâ</strong> philosophy - Automation should not mean that one should not 162visually inspect the results or understand the methods. 163Thus, <em>fMRIPrep</em> provides visual reports for each subject, detailing the 164accuracy of the most important processing steps. 165This, combined with the documentation, can help researchers to understand 166the process and decide which subjects should be kept for the group level 167analysis.</p></li> 168</ol> 169</section> 170<section id="citation"> 171<h2>Citation<a class="headerlink" href="#citation" title="Link to this heading">ï</a></h2> 172<p><strong>Citation boilerplate</strong>. 173Please acknowledge this work using the citation boilerplate that <em>fMRIPrep</em> includes 174in the visual report generated for every subject processed. 175For a more detailed description of the citation boilerplate and its relevance, 176please check out the 177<a class="reference external" href="https://www.nipreps.org/intro/transparency/#citation-boilerplates">NiPreps documentation</a>.</p> 178<p><strong>Plagiarism disclaimer</strong>. 179The boilerplate text is public domain, distributed under the 180<a class="reference external" href="https://creativecommons.org/publicdomain/zero/1.0/">CC0 license</a>, 181and we recommend <em>fMRIPrep</em> users to reproduce it verbatim in their works. 182Therefore, if reviewers and/or editors raise concerns because the text is flagged by automated 183plagiarism detection, please refer them to the <em>NiPreps</em> community and/or the note to this 184effect in the <a class="reference external" href="https://www.nipreps.org/intro/transparency/#citation-boilerplates">boilerplate documentation page</a>.</p> 185<p><strong>Papers</strong>. 186<em>fMRIPrep</em> contributors have published two relevant papers: 187<a class="reference external" href="https://doi.org/10.1038/s41592-018-0235-4">Esteban et al. (2019)</a> 188[<a class="reference external" href="https://doi.org/10.1101/306951">preprint</a>], and 189<a class="reference external" href="https://doi.org/10.1038/s41596-020-0327-3">Esteban et al. (2020)</a> 190[<a class="reference external" href="https://doi.org/10.1101/694364">preprint</a>].</p> 191<p><strong>Other</strong>. 192Other materials that have been generated over time include the 193<a class="reference external" href="https://effigies.github.io/fmriprep-demo/">
193OHBM 2018 software demonstration</a> 194and some conference posters:</p> 195<ul class="simple"> 196<li><p>Organization for Human Brain Mapping 2018 197(<a class="reference external" href="https://ww5.aievolution.com/hbm1801/index.cfm?do=abs.viewAbs&abs=1321">Abstract</a>; 198<a class="reference external" href="https://files.aievolution.com/hbm1801/abstracts/31779/2035_Markiewicz.pdf">PDF</a>)</p></li> 199</ul> 200<a class="reference external image-reference" href="_static/OHBM2018-poster.png"><img alt="_images/OHBM2018-poster_thumb.png" src="_images/OHBM2018-poster_thumb.png" /> 201</a> 202<ul class="simple"> 203<li><p>Organization for Human Brain Mapping 2017 204(<a class="reference external" href="https://ww5.aievolution.com/hbm1701/index.cfm?do=abs.viewAbs&abs=4111">Abstract</a>; 205<a class="reference external" href="https://f1000research.com/posters/6-1129">PDF</a>)</p></li> 206</ul> 207<a class="reference external image-reference" href="_static/OHBM2017-poster.png"><img alt="_images/OHBM2017-poster_thumb.png" src="_images/OHBM2017-poster_thumb.png" /> 208</a> 209</section> 210<section id="license-information"> 211<h2>License information<a class="headerlink" href="#license-information" title="Link to this heading">ï</a></h2> 212<p><em>fMRIPrep</em> adheres to the 213<a class="reference external" href="https://www.nipreps.org/community/licensing/">general licensing guidelines</a> 214of the <em>NiPreps framework</em>.</p> 215<section id="license"> 216<h3>License<a class="headerlink" href="#license" title="Link to this heading">ï</a></h3> 217<p>Copyright (c) the <em>NiPreps</em> Developers.</p> 218<p>As of the 21.0.x pre-release and release series, <em>fMRIPrep</em> is 219licensed under the Apache License, Version 2.0 (the âLicenseâ); 220you may not use this file except in compliance with the License. 221You may obtain a copy of the License at 222<a class="reference external" href="http://www.apache.org/licenses/LICENSE-2.0">http://www.apache.org/licenses/LICENSE-2.0</a>.</p> 223<p>Unless required by applicable law or agreed to in writing, software 224distributed under the License is distributed on an âAS ISâ BASIS, 225WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. 226See the License for the specific language governing permissions and 227limitations under the License.</p> 228</section> 229</section> 230<section id="acknowledgements"> 231<h2>Acknowledgements<a class="headerlink" href="#acknowledgements" title="Link to this heading">ï</a></h2> 232<p>This work is steered and maintained by the <a class="reference external" href="https://www.nipreps.org">NiPreps Community</a>. 233This work was supported by the Laura and John Arnold Foundation, 234the NIH (grant NBIB R01EB020740, PI: Ghosh), 235and NIMH (R24MH114705, R24MH117179, R01MH121867, PI: Poldrack)</p> 236</section> 237<section id="contents"> 238<h2>Contents<a class="headerlink" href="#contents" title="Link to this heading">ï</a></h2> 239<div class="toctree-wrapper compound"> 240<ul> 241<li class="toctree-l1"><a class="reference internal" href="installation.html">Installation</a><ul> 242<li class="toctree-l2"><a class="reference internal" href="installation.html#containerized-execution-docker-and-singularity">Containerized execution (Docker and Singularity)</a></li> 243<li class="toctree-l2"><a class="reference internal" href="installation.html#manually-prepared-environment-python-3-10">Manually Prepared Environment (Python 3.10+)</a><ul> 244<li class="toctree-l3"><a class="reference internal" href="installation.html#external-dependencies">External Dependencies</a></li> 245</ul> 246</li> 247<li class="toctree-l2"><a class="reference internal" href="installation.html#not-running-on-a-local-machine-data-transfer">Not running on a local machine? - Data transfer</a></li> 248</ul> 249</li> 250<li class="toctree-l1"><a class="reference internal" href="usage.html">Usage Notes</a><ul> 251<li class="toctree-l2"><a class="reference internal" href="usage.html#execution-and-the-bids-format">Execution and the BIDS format</a></li> 252<li class="toctree-l2"><a class="reference internal" href="usage.html#command-line-arguments">Command-Line Arguments</a><ul> 253<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-positional-arguments">Positional Arguments</a></li> 254<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-for-filtering-bids-queries">Options for filtering BIDS queries</a></li> 255<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-to-handle-performance">Options to handle performance</a></li> 256<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-for-performing-only-a-subset-of-the-workflow">Options for performing only a subset of the workflow</a></li> 257<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-workflow-configuration">Workflow configuration</a></li> 258<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-for-modulating-outputs">Options for modulating outputs</a></li> 259<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-relating-to-confounds">Options relating to confounds</a></li> 260<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-ants-registrations">Specific options for ANTs registrations</a></li> 261<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-handling-fieldmaps">Specific options for handling fieldmaps</a></li> 262<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-syn-distortion-correction">Specific options for SyN distortion correction</a></li> 263<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-specific-options-for-freesurfer-preprocessing">
263Specific options for FreeSurfer preprocessing</a></li> 264<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-options-for-carbon-usage-tracking">Options for carbon usage tracking</a></li> 265<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep.cli.parser-_build_parser-other-options">Other options</a></li> 266</ul> 267</li> 268<li class="toctree-l2"><a class="reference internal" href="usage.html#the-command-line-interface-of-the-docker-wrapper">The command-line interface of the docker wrapper</a><ul> 269<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep_docker.__main__-get_parser-positional-arguments">Positional Arguments</a></li> 270<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep_docker.__main__-get_parser-named-arguments">Named Arguments</a></li> 271<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep_docker.__main__-get_parser-wrapper-options">Wrapper options</a></li> 272<li class="toctree-l3"><a class="reference internal" href="usage.html#fmriprep_docker.__main__-get_parser-developer-options">Developer options</a></li> 273</ul> 274</li> 275<li class="toctree-l2"><a class="reference internal" href="usage.html#limitations-and-reasons-not-to-use-fmriprep">Limitations and reasons not to use <em>fMRIPrep</em></a></li> 276<li class="toctree-l2"><a class="reference internal" href="usage.html#the-freesurfer-license">The FreeSurfer license</a></li> 277<li class="toctree-l2"><a class="reference internal" href="usage.html#reusing-precomputed-derivatives">Reusing precomputed derivatives</a><ul> 278<li class="toctree-l3"><a class="reference internal" href="usage.html#reusing-a-previous-partial-execution-of-fmriprep">Reusing a previous, partial execution of <em>fMRIPrep</em></a></li> 279<li class="toctree-l3"><a class="reference internal" href="usage.html#using-a-previous-run-of-freesurfer">Using a previous run of <em>FreeSurfer</em></a></li> 280<li class="toctree-l3"><a class="reference internal" href="usage.html#bids-derivatives-reuse">BIDS Derivatives reuse</a></li> 281</ul> 282</li> 283<li class="toctree-l2"><a class="reference internal" href="usage.html#troubleshooting">Troubleshooting</a></li> 284<li class="toctree-l2"><a class="reference internal" href="usage.html#about-the-nipreps-framework-licensing">About the <em>NiPreps</em> framework licensing</a></li> 285<li class="toctree-l2"><a class="reference internal" href="usage.html#license-information">License information</a><ul> 286<li class="toctree-l3"><a class="reference internal" href="usage.html#the-fmriprep-wrapper-for-docker">The <code class="docutils literal notranslate"><span class="pre">fmriprep-wrapper</span></code> for Docker</a></li> 287</ul> 288</li> 289</ul> 290</li> 291<li class="toctree-l1"><a class="reference internal" href="workflows.html">Processing pipeline details</a><ul> 292<li class="toctree-l2"><a class="reference internal" href="workflows.html#preprocessing-of-structural-mri">Preprocessing of structural MRI</a><ul> 293<li class="toctree-l3"><a class="reference internal" href="workflows.html#brain-extraction-brain-tissue-segmentation-and-spatial-normalization">Brain extraction, brain tissue segmentation and spatial normalization</a></li> 294<li class="toctree-l3"><a class="reference internal" href="workflows.html#cost-function-masking-during-spatial-normalization">Cost function masking during spatial normalization</a></li> 295<li class="toctree-l3"><a class="reference internal" href="workflows.html#longitudinal-processing">Longitudinal processing</a></li> 296<li class="toctree-l3"><a class="reference internal" href="workflows.html#surface-preprocessing">Surface preprocessing</a></li> 297<li class="toctree-l3"><a class="reference internal" href="workflows.html#refinement-of-the-brain-mask">Refinement of the brain mask</a></li> 298</ul> 299</li> 300<li class="toctree-l2"><a class="reference internal" href="workflows.html#bold-preprocessing">BOLD preprocessing</a><ul> 301<li class="toctree-l3"><a class="reference internal" href="workflows.html#bold-reference-image-estimation">BOLD reference image estimation</a></li> 302<li class="toctree-l3"><a class="reference internal" href="workflows.html#head-motion-estimation">Head-motion estimation</a></li> 303<li class="toctree-l3"><a class="reference internal" href="workflows.html#slice-time-correction">Slice time correction</a></li> 304<li class="toctree-l3"><a class="reference internal" href="workflows.html#susceptibility-distortion-correction-sdc">Susceptibility Distortion Correction (SDC)</a></li> 305<li class="toctree-l3"><a class="reference internal" href="workflows.html#pre-processed-bold-in-native-space">Pre-processed BOLD in native space</a></li> 306<li class="toctree-l3"><a class="reference internal" href="workflows.html#epi-to-t1w-registration">EPI to T1w registration</a></li> 307<li class="toctree-l3"><a class="reference internal" href="workflows.html#resampling-bold-runs-onto-standard-spaces">Resampling BOLD runs onto standard spaces</a></li> 308<li class="toctree-l3"><a class="reference internal" href="workflows.html#epi-sampled-to-freesurfer-surfaces">EPI sampled to FreeSurfer surfaces</a></li> 309<li class="toctree-l3"><a class="reference internal" href="workflows.html#hcp-grayordinates">HCP Grayordinates</a></li> 310<li class="toctree-l3"><a class="reference internal" href="workflows.html#confounds-estimation">Confounds estimation</a></li> 311<li class="toctree-l3"><a class="reference internal" href="workflows.html#t2-driven-echo-combination">T2*-driven echo combination</a></li> 312</ul> 313</li> 314<li class="toctree-l2"><a class="reference internal" href="workflows.html#references">References</a></li> 315</ul> 316</li> 317<li class="toctree-l1"><a class="reference internal" href="outputs.html">Outputs of <em>fMRIPrep</em></a><ul> 318<li class="toctree-l2"><a class="reference internal" href="outputs.html#layout">Layout</a></li> 319<li class="toctree-l2"><a class="reference internal" href="outputs.html#processing-level">Processing level</a></li> 320<li class="toctree-l2"><a class="reference internal" href="outputs.html#visual-reports">Visual Reports</a></li> 321<li class="toctree-l2"><a class="reference internal" href="outputs.html#derivatives-of-fmriprep-preprocessed-data">Derivatives of <em>fMRIPrep</em> (preprocessed data)</a><ul> 322<li class="toctree-l3"><a class="reference internal" href="outputs.html#anatomical-derivatives">Anatomical derivatives</a></li> 323<li class="toctree-l3"><a class="reference internal" href="outputs.html#freesurfer-derivatives">FreeSurfer derivatives</a></li> 324<li class="toctree-l3"><a class="reference internal" href="outputs.html#functional-derivatives">Functional derivatives</a></li> 325</ul> 326</li> 327<li class="toctree-l2"><a class="reference internal" href="outputs.html#confounds">Confounds</a><ul> 328<li class="toctree-l3"><a class="reference internal" href="outputs.html#confound-regressors-description">Confound regressors description</a></li> 329<li class="toctree-l3"><a class="reference internal" href="outputs.html#confounds-and-carpet-plot-on-the-visual-reports">Confounds and âcarpetâ-plot on the visual reports</a></li> 330</ul> 331</li> 332<li class="toctree-l2"><a class="reference internal" href="outputs.html#legacy-layout">Legacy layout</a></li> 333</ul> 334</li> 335<li class="toctree-l1"><a class="reference internal" href="benchmarks.html">Performance benchmarks</a><ul> 336<li class="toctree-l2"><a class="reference internal" href="benchmarks.html#datasets-and-commands">Datasets and commands</a><ul> 337<li class="toctree-l3"><a class="reference internal" href="benchmarks.html#datasets">Datasets</a></li> 338<li class="toctree-l3"><a class="reference internal" href="benchmarks.html#fmriprep-versions-and-modes">fMRIPrep versions and modes</a></li> 339<li class="toctree-l3"><a class="reference internal" href="benchmarks.html#machine-details">
339Machine details</a></li> 340</ul> 341</li> 342<li class="toctree-l2"><a class="reference internal" href="benchmarks.html#benchmarks">Benchmarks</a><ul> 343<li class="toctree-l3"><a class="reference internal" href="benchmarks.html#dataset-a">Dataset A</a></li> 344<li class="toctree-l3"><a class="reference internal" href="benchmarks.html#dataset-b">Dataset B</a></li> 345</ul> 346</li> 347</ul> 348</li> 349<li class="toctree-l1"><a class="reference internal" href="spaces.html">Defining standard and nonstandard spaces where data will be resampled</a><ul> 350<li class="toctree-l2"><a class="reference internal" href="spaces.html#templateflow"><em>TemplateFlow</em></a></li> 351<li class="toctree-l2"><a class="reference internal" href="spaces.html#standard-spaces">Standard spaces</a></li> 352<li class="toctree-l2"><a class="reference internal" href="spaces.html#custom-standard-spaces">Custom standard spaces</a></li> 353<li class="toctree-l2"><a class="reference internal" href="spaces.html#nonstandard-spaces">Nonstandard spaces</a></li> 354<li class="toctree-l2"><a class="reference internal" href="spaces.html#preprocessing-blocks-depending-on-standard-templates">Preprocessing blocks depending on standard templates</a></li> 355</ul> 356</li> 357<li class="toctree-l1"><a class="reference internal" href="faq.html">FAQ - Frequently Asked Questions</a><ul> 358<li class="toctree-l2"><a class="reference internal" href="faq.html#should-i-run-quality-control-of-my-images-before-running-fmriprep">Should I run quality control of my images before running <em>fMRIPrep</em>?</a></li> 359<li class="toctree-l2"><a class="reference internal" href="faq.html#what-if-i-find-some-images-have-undergone-some-pre-processing-already-e-g-my-t1w-image-is-already-skull-stripped">What if I find some images have undergone some pre-processing already (e.g., my T1w image is already skull-stripped)?</a></li> 360<li class="toctree-l2"><a class="reference internal" href="faq.html#my-fmriprep-run-is-hanging">My <em>fMRIPrep</em> run is hangingâ¦</a></li> 361<li class="toctree-l2"><a class="reference internal" href="faq.html#i-have-already-run-recon-all-on-my-subjects-can-i-reuse-my-outputs">I have already run <code class="docutils literal notranslate"><span class="pre">recon-all</span></code> on my subjects, can I reuse my outputs?</a></li> 362<li class="toctree-l2"><a class="reference internal" href="faq.html#error-it-appears-that-recon-all-is-already-running">ERROR: it appears that <code class="docutils literal notranslate"><span class="pre">recon-all</span></code> is already running</a></li> 363<li class="toctree-l2"><a class="reference internal" href="faq.html#running-subjects-in-parallel">Running subjects in parallel</a></li> 364<li class="toctree-l2"><a class="reference internal" href="faq.html#how-much-cpu-time-and-ram-should-i-allocate-for-a-typical-fmriprep-run">How much CPU time and RAM should I allocate for a typical <em>fMRIPrep</em> run?</a></li> 365<li class="toctree-l2"><a class="reference internal" href="faq.html#a-new-version-of-fmriprep-has-been-published-when-should-i-upgrade">A new version of <em>fMRIPrep</em> has been published, when should I upgrade?</a></li> 366<li class="toctree-l2"><a class="reference internal" href="faq.html#i-m-running-fmriprep-via-singularity-containers-how-can-i-troubleshoot-problems">Iâm running <em>fMRIPrep</em> via Singularity containers - how can I troubleshoot problems?</a></li> 367<li class="toctree-l2"><a class="reference internal" href="faq.html#what-is-templateflow-for">What is <em>TemplateFlow</em> for?</a></li> 368<li class="toctree-l2"><a class="reference internal" href="faq.html#how-do-you-use-templateflow-in-the-absence-of-access-to-the-internet">How do you use <em>TemplateFlow</em> in the absence of access to the Internet?</a></li> 369<li class="toctree-l2"><a class="reference internal" href="faq.html#how-do-i-select-only-certain-files-to-be-input-to-fmriprep">How do I select only certain files to be input to <em>fMRIPrep</em>?</a></li> 370<li class="toctree-l2"><a class="reference internal" href="faq.html#can-fmriprep-continue-to-run-after-encountering-an-error">Can <em>fMRIPrep</em> continue to run after encountering an error?</a></li> 371<li class="toctree-l2"><a class="reference internal" href="faq.html#can-i-use-fmriprep-for-longitudinal-studies">Can I use <em>fMRIPrep</em> for longitudinal studies?</a></li> 372<li class="toctree-l2"><a class="reference internal" href="faq.html#how-to-decrease-fmriprep-runtime-when-working-with-large-datasets">How to decrease <em>fMRIPrep</em> runtime when working with large datasets?</a></li> 373<li class="toctree-l2"><a class="reference internal" href="faq.html#error-in-slice-timing-correction-insufficient-length-of-bold-data-after-discarding-nonsteady-states">Error in slice timing correction: <em>insufficient length of BOLD data after discarding nonsteady-states</em></a></li> 374</ul> 375</li> 376<li class="toctree-l1"><a class="reference internal" href="api.html">Developers - API</a><ul> 377<li class="toctree-l2"><a class="reference internal" href="api.html#the-nipreps-community-and-contributing-guidelines">The <em>NiPreps</em> community and contributing guidelines</a></li> 378<li class="toctree-l2">
378<a class="reference internal" href="api.html#setting-up-your-development-environment">Setting up your development environment</a></li> 379<li class="toctree-l2"><a class="reference internal" href="api.html#module-fmriprep.config">Internal configuration system</a><ul> 380<li class="toctree-l3"><a class="reference internal" href="api.html#configuration-sections">Configuration sections</a></li> 381<li class="toctree-l3"><a class="reference internal" href="api.html#usage">Usage</a></li> 382<li class="toctree-l3"><a class="reference internal" href="api.html#logging">Logging</a></li> 383<li class="toctree-l3"><a class="reference internal" href="api.html#other-responsibilities">Other responsibilities</a></li> 384<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.dumps"><code class="docutils literal notranslate"><span class="pre">dumps()</span></code></a></li> 385<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.from_dict"><code class="docutils literal notranslate"><span class="pre">from_dict()</span></code></a></li> 386<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.get"><code class="docutils literal notranslate"><span class="pre">get()</span></code></a></li> 387<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.init_spaces"><code class="docutils literal notranslate"><span class="pre">init_spaces()</span></code></a></li> 388<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.load"><code class="docutils literal notranslate"><span class="pre">load()</span></code></a></li> 389<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep.config.to_filename"><code class="docutils literal notranslate"><span class="pre">to_filename()</span></code></a></li> 390</ul> 391</li> 392<li class="toctree-l2"><a class="reference internal" href="api.html#id1">Workflows</a><ul> 393<li class="toctree-l3"><a class="reference internal" href="api.html#fmriprep-base-processing-workflows">fMRIPrep base processing workflows</a></li> 394<li class="toctree-l3"><a class="reference internal" href="api.html#module-fmriprep.workflows.bold.base">Pre-processing fMRI - BOLD signal workflows</a></li> 395</ul> 396</li> 397</ul> 398</li> 399<li class="toctree-l1"><a class="reference internal" href="changes.html">Whatâs new</a><ul> 400<li class="toctree-l2"><a class="reference internal" href="changes.html#march-10-2026">25.2.5 (March 10, 2026)</a></li> 401<li class="toctree-l2"><a class="reference internal" href="changes.html#january-14-2026">25.2.4 (January 14, 2026)</a></li> 402<li class="toctree-l2"><a class="reference internal" href="changes.html#october-17-2025">25.2.3 (October 17, 2025)</a></li> 403<li class="toctree-l2"><a class="reference internal" href="changes.html#october-06-2025">25.2.2 (October 06, 2025)</a></li> 404<li class="toctree-l2"><a class="reference internal" href="changes.html#october-03-2025">25.2.1 (October 03, 2025)</a></li> 405<li class="toctree-l2"><a class="reference internal" href="changes.html#october-01-2025">25.2.0 (October 01, 2025)</a></li> 406<li class="toctree-l2"><a class="reference internal" href="changes.html#july-31-2025">25.1.4 (July 31, 2025)</a></li> 407<li class="toctree-l2"><a class="reference internal" href="changes.html#june-19-2025">25.1.3 (June 19, 2025)</a></li> 408<li class="toctree-l2"><a class="reference internal" href="changes.html#june-17-2025">25.1.2 (June 17, 2025)</a></li> 409<li class="toctree-l2"><a class="reference internal" href="changes.html#may-23-2025">25.1.1 (May 23, 2025)</a></li> 410<li class="toctree-l2"><a class="reference internal" href="changes.html#may-21-2025">25.1.0 (May 21, 2025)</a><ul> 411<li class="toctree-l3"><a class="reference internal" href="changes.html#structural-processing-changes">Structural processing changes</a></li> 412<li class="toctree-l3"><a class="reference internal" href="changes.html#fieldmap-processing-changes">Fieldmap processing changes</a></li> 413<li class="toctree-l3"><a class="reference internal" href="changes.html#all-merged-pull-requests">All merged pull requests</a></li> 414</ul> 415</li> 416<li class="toctree-l2"><a class="reference internal" href="changes.html#march-25-2025">25.0.0 (March 25, 2025)</a><ul> 417<li class="toctree-l3"><a class="reference internal" href="changes.html#id1">Structural processing changes</a></li> 418<li class="toctree-l3"><a class="reference internal" href="changes.html#id2">Fieldmap processing changes</a></li> 419<li class="toctree-l3"><a class="reference internal" href="changes.html#id3">All merged pull requests</a></li> 420</ul> 421</li> 422<li class="toctree-l2"><a class="reference internal" href="changes.html#october-10-2024">24.1.1 (October 10, 2024)</a></li> 423<li class="toctree-l2"><a class="reference internal" href="changes.html#september-16-2024">24.1.0 (September 16, 2024)</a></li> 424<li class="toctree-l2"><a class="reference internal" href="changes.html#july-16-2024">24.0.1 (July 16, 2024)</a></li> 425<li class="toctree-l2"><a class="reference internal" href="changes.html#june-17-2024">24.0.0 (June 17, 2024)</a></li> 426<li class="toctree-l2"><a class="reference internal" href="changes.html#may-20-2024">23.2.3 (May 20, 2024)</a></li> 427<li class="toctree-l2"><a class="reference internal" href="changes.html#may-06-2024">23.2.2 (May 06, 2024)</a></li> 428<li class="toctree-l2"><a class="reference internal" href="changes.html#march-06-2024">23.2.1 (March 06, 2024)</a></li> 429<li class="toctree-l2"><a class="reference internal" href="changes.html#january-10-2024">23.2.0 (January 10, 2024)</a></li> 430<li class="toctree-l2"><a class="reference internal" href="changes.html#august-1-2023">23.1.4 (August 1, 2023)</a></li> 431<li class="toctree-l2"><a class="reference internal" href="changes.html#june-24-2023">23.1.3 (June 24, 2023)</a></li> 432<li class="toctree-l2"><a class="reference internal" href="changes.html#june-16-2023">23.1.2 (June 16, 2023)</a></li> 433<li class="toctree-l2"><a class="reference internal" href="changes.html#june-14-2023">23.1.1 (June 14, 2023)</a></li> 434<li class="toctree-l2"><a class="reference internal" href="changes.html#june-12-2023">23.1.0 (June 12, 2023)</a></li> 435<li class="toctree-l2"><a class="reference internal" href="changes.html#april-24-2023">23.0.2 (April 24, 2023)</a></li> 436<li class="toctree-l2"><a class="reference internal" href="changes.html#march-24-2023">23.0.1 (March 24, 2023)</a></li> 437<li class="toctree-l2"><a class="reference internal" href="changes.html#march-13-2023">23.0.0 (March 13, 2023)</a></li> 438<li class="toctree-l2"><a class="reference internal" href="changes.html#january-04-2023">22.1.1 (January 04, 2023)</a></li> 439<li class="toctree-l2"><a class="reference internal" href="changes.html#december-12-2022">22.1.0 (December 12, 2022)</a></li> 440<li class="toctree-l2"><a class="reference internal" href="changes.html#september-27-2022">22.0.2 (September 27, 2022)</a></li> 441<li class="toctree-l2"><a class="reference internal" href="changes.html#september-13-2022">22.0.1 (September 13, 2022)</a></li> 442<li class="toctree-l2"><a class="reference internal" href="changes.html#july-28-2022">22.0.0 (July 28, 2022)</a></li> 443<li class="toctree-l2"><a class="reference internal" href="changes.html#september-29-2022">21.0.4 (September 29, 2022)</a></li> 444<li class="toctree-l2"><a class="reference internal" href="changes.html#september-6-2022">21.0.3 (September 6, 2022)</a></li> 445<li class="toctree-l2"><a class="reference internal" href="changes.html#april-21-2022">21.0.2 (April 21, 2022)</a></li> 446<li class="toctree-l2"><a class="reference internal" href="changes.html#january-24-2022">21.0.1 (January 24, 2022)</a></li> 447<li class="toctree-l2"><a class="reference internal" href="changes.html#december-14-2021">21.0.0 (December 14, 2021)</a></li> 448<li class="toctree-l2"><a class="reference internal" href="changes.html#july-18-2024">20.2.8 (July 18, 2024)</a></li> 449<li class="toctree-l2"><a class="reference internal" href="changes.html#id4">20.2.7 (January 24, 2022)</a></li> 450<li class="toctree-l2"><a class="reference internal" href="changes.html#october-27-2021">20.2.6 (October 27, 2021)</a></li> 451<li class="toctree-l2"><a class="reference internal" href="changes.html#october-12-2021">20.2.5 (October 12, 2021)</a></li> 452<li class="toctree-l2"><a class="reference internal" href="changes.html#october-04-2021">20.2.4 (October 04, 2021)</a></li> 453<li class="toctree-l2"><a class="reference internal" href="changes.html#july-21-2021">20.2.3 (July 21, 2021)</a></li> 454<li class="toctree-l2"><a class="reference internal" href="changes.html#july-16-2021">20.2.2 (July 16, 2021)</a></li> 455<li class="toctree-l2"><a class="reference internal" href="changes.html#november-06-2020">20.2.1 (November 06, 2020)</a></li> 456<li class="toctree-l2"><a class="reference internal" href="changes.html#september-28-2020">20.2.0 (September 28, 2020)</a></li> 457<li class="toctree-l2"><a class="reference internal" href="changes.html#id5">20.1.4 (July 16, 2021)</a></li> 458<li class="toctree-l2"><a class="reference internal" href="changes.html#september-15-2020">20.1.3 (September 15, 2020)</a></li> 459<li class="toctree-l2"><a class="reference internal" href="changes.html#september-04-2020">20.1.2 (September 04, 2020)</a></li> 460<li class="toctree-l2"><a class="reference internal" href="changes.html#june-04-2020">20.1.1 (June 04, 2020)</a></li> 461<li class="toctree-l2"><a class="reference internal" href="changes.html#may-27-2020">20.1.0 (May 27, 2020)</a></li> 462<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-february-2020">20.0.x series (February 2020)</a><ul> 463<li class="toctree-l3"><a class="reference internal" href="changes.html#may-5-2020">20.0.7 (May 5, 2020)</a></li> 464<li class="toctree-l3"><a class="reference internal" href="changes.html#april-16-2020">20.0.6 (April 16, 2020)</a></li> 465<li class="toctree-l3"><a class="reference internal" href="changes.html#march-19-2020">20.0.5 (March 19, 2020)</a></li> 466<li class="toctree-l3"><a class="reference internal" href="changes.html#march-17-2020">20.0.4 (March 17, 2020)</a></li> 467<li class="toctree-l3"><a class="reference internal" href="changes.html#march-12-2020">20.0.3 (March 12, 2020)</a></li> 468<li class="toctree-l3"><a class="reference internal" href="changes.html#march-6-2020">20.0.2 (March 6, 2020)</a></li> 469<li class="toctree-l3"><a class="reference internal" href="changes.html#february-27-2020">20.0.1 (February 27, 2020)</a></li> 470<li class="toctree-l3"><a class="reference internal" href="changes.html#february-24-2020">20.0.0 (February 24, 2020)</a></li> 471</ul> 472</li> 473<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-september-2019">1.5.x series (September 2019)</a><ul> 474<li class="toctree-l3"><a class="reference internal" href="changes.html#id6">1.5.10 (April 16, 2020)</a></li> 475<li class="toctree-l3"><a class="reference internal" href="changes.html#february-14-2020">1.5.9 (February 14, 2020)</a></li> 476<li class="toctree-l3"><a class="reference internal" href="changes.html#january-28-2020">1.5.8 (January 28, 2020)</a></li> 477<li class="toctree-l3"><a class="reference internal" href="changes.html#january-23-2020">1.5.7 (January 23, 2020)</a></li> 478<li class="toctree-l3">
478<a class="reference internal" href="changes.html#january-22-2020">1.5.6 (January 22, 2020)</a></li> 479<li class="toctree-l3"><a class="reference internal" href="changes.html#january-14-2020">1.5.5 (January 14, 2020)</a></li> 480<li class="toctree-l3"><a class="reference internal" href="changes.html#december-18-2019">1.5.4 (December 18, 2019)</a></li> 481<li class="toctree-l3"><a class="reference internal" href="changes.html#december-12-2019">1.5.3 (December 12, 2019)</a></li> 482<li class="toctree-l3"><a class="reference internal" href="changes.html#december-2-2019">1.5.2 (December 2, 2019)</a></li> 483<li class="toctree-l3"><a class="reference internal" href="changes.html#november-26-2019">1.5.1 (November 26, 2019)</a></li> 484<li class="toctree-l3"><a class="reference internal" href="changes.html#september-9-2019">1.5.0 (September 9, 2019)</a></li> 485</ul> 486</li> 487<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-may-2019">1.4.x series (May 2019)</a><ul> 488<li class="toctree-l3"><a class="reference internal" href="changes.html#july-9-2019">1.4.1 (July 9, 2019)</a></li> 489<li class="toctree-l3"><a class="reference internal" href="changes.html#may-15-2019">1.4.0 (May 15, 2019)</a></li> 490</ul> 491</li> 492<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-march-2019">1.3.x series (March 2019)</a><ul> 493<li class="toctree-l3"><a class="reference internal" href="changes.html#march-18-2019">1.3.2 (March 18, 2019)</a></li> 494<li class="toctree-l3"><a class="reference internal" href="changes.html#post2-march-13-2019">1.3.1.post2 (March 13, 2019)</a></li> 495<li class="toctree-l3"><a class="reference internal" href="changes.html#post1-march-11-2019">1.3.1.post1 (March 11, 2019)</a></li> 496<li class="toctree-l3"><a class="reference internal" href="changes.html#march-6-2019">1.3.1 (March 6, 2019)</a></li> 497<li class="toctree-l3"><a class="reference internal" href="changes.html#post3-march-1-2019">1.3.0.post3 (March 1, 2019)</a></li> 498<li class="toctree-l3"><a class="reference internal" href="changes.html#post2-february-14-2019">1.3.0.post2 (February 14, 2019)</a></li> 499<li class="toctree-l3"><a class="reference internal" href="changes.html#post1-february-8-2019">1.3.0.post1 (February 8, 2019)</a></li> 500<li class="toctree-l3"><a class="reference internal" href="changes.html#february-7-2019">1.3.0 (February 7, 2019)</a></li> 501</ul> 502</li> 503<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-january-2019">1.2.x series (January 2019)</a><ul> 504<li class="toctree-l3"><a class="reference internal" href="changes.html#january-24-2019">1.2.6-1 (January 24, 2019)</a></li> 505<li class="toctree-l3"><a class="reference internal" href="changes.html#january-17-2019">1.2.6 (January 17, 2019)</a></li> 506<li class="toctree-l3"><a class="reference internal" href="changes.html#december-4-2018">1.2.5 (December 4, 2018)</a></li> 507<li class="toctree-l3"><a class="reference internal" href="changes.html#december-3-2018">1.2.4 (December 3, 2018)</a></li> 508<li class="toctree-l3"><a class="reference internal" href="changes.html#november-16-2018">1.2.3 (November 16, 2018)</a></li> 509<li class="toctree-l3"><a class="reference internal" href="changes.html#november-9-2018">1.2.2 (November 9, 2018)</a></li> 510<li class="toctree-l3"><a class="reference internal" href="changes.html#november-1-2018">1.2.1 (November 1, 2018)</a></li> 511<li class="toctree-l3"><a class="reference internal" href="changes.html#october-31-2018">1.2.0 (October 31, 2018)</a></li> 512</ul> 513</li> 514<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-october-2018">1.1.x series (October 2018)</a><ul> 515<li class="toctree-l3"><a class="reference internal" href="changes.html#october-4-2018">1.1.8 (October 4, 2018)</a></li> 516<li class="toctree-l3"><a class="reference internal" href="changes.html#september-25-2018">1.1.7 (September 25, 2018)</a></li> 517<li class="toctree-l3"><a class="reference internal" href="changes.html#september-10-2018">1.1.6 (September 10, 2018)</a></li> 518<li class="toctree-l3"><a class="reference internal" href="changes.html#september-06-2018">1.1.5 (September 06, 2018)</a></li> 519<li class="toctree-l3"><a class="reference internal" href="changes.html#august-06-2018">1.1.4 (August 06, 2018)</a></li> 520<li class="toctree-l3"><a class="reference internal" href="changes.html#july-30-2018">1.1.3 (July 30, 2018)</a></li> 521<li class="toctree-l3"><a class="reference internal" href="changes.html#july-6-2018">1.1.2 (July 6, 2018)</a></li> 522<li class="toctree-l3"><a class="reference internal" href="changes.html#june-7-2018">1.1.1 (June 7, 2018)</a></li> 523<li class="toctree-l3"><a class="reference internal" href="changes.html#june-4-2018">1.1.0 (June 4, 2018)</a></li> 524</ul> 525</li> 526<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-may-2018">1.0.x series (May 2018)</a><ul> 527<li class="toctree-l3"><a class="reference internal" href="changes.html#may-17-2018">1.0.15 (May 17, 2018)</a></li> 528<li class="toctree-l3"><a class="reference internal" href="changes.html#may-15-2018">1.0.14 (May 15, 2018)</a></li> 529<li class="toctree-l3"><a class="reference internal" href="changes.html#may-11-2018">1.0.13 (May 11, 2018)</a></li> 530<li class="toctree-l3"><a class="reference internal" href="changes.html#may-03-2018">1.0.12 (May 03, 2018)</a></li> 531<li class="toctree-l3"><a class="reference internal" href="changes.html#april-16-2018">1.0.11 (April 16, 2018)</a></li> 532<li class="toctree-l3"><a class="reference internal" href="changes.html#id9">1.0.10 (April 16, 2018)</a></li> 533<li class="toctree-l3"><a class="reference internal" href="changes.html#april-10-2018">1.0.9 (April 10, 2018)</a></li> 534<li class="toctree-l3"><a class="reference internal" href="changes.html#february-22-2018">1.0.8 (February 22, 2018)</a></li> 535<li class="toctree-l3"><a class="reference internal" href="changes.html#february-13-2018">1.0.7 (February 13, 2018)</a></li> 536<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-january-2018">1.0.6 (29th of January 2018)</a></li> 537<li class="toctree-l3"><a class="reference internal" href="changes.html#st-of-january-2018">1.0.5 (21st of January 2018)</a></li> 538<li class="toctree-l3"><a class="reference internal" href="changes.html#id10">1.0.4 (15th of January 2018)</a></li> 539<li class="toctree-l3"><a class="reference internal" href="changes.html#rd-of-january-2018">1.0.3 (3rd of January 2018)</a></li> 540<li class="toctree-l3"><a class="reference internal" href="changes.html#nd-of-january-2018">1.0.2 (2nd of January 2018)</a></li> 541<li class="toctree-l3"><a class="reference internal" href="changes.html#id11">1.0.1 (1st of January 2018)</a></li> 542<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-december-2017">1.0.0 (6th of December 2017)</a></li> 543<li class="toctree-l3"><a class="reference internal" href="changes.html#rc13-1st-of-december-2017">1.0.0-rc13 (1st of December 2017)</a></li> 544<li class="toctree-l3"><a class="reference internal" href="changes.html#rc12-29th-of-november-2017">1.0.0-rc12 (29th of November 2017)</a></li> 545<li class="toctree-l3"><a class="reference internal" href="changes.html#rc11-24th-of-november-2017">1.0.0-rc11 (24th of November 2017)</a></li> 546<li class="toctree-l3"><a class="reference internal" href="changes.html#rc10-9th-of-november-2017">1.0.0-rc10 (9th of November 2017)</a></li> 547<li class="toctree-l3"><a class="reference internal" href="changes.html#rc9-2nd-of-november-2017">1.0.0-rc9 (2nd of November 2017)</a></li> 548<li class="toctree-l3"><a class="reference internal" href="changes.html#rc8-27th-of-october-2017">1.0.0-rc8 (27th of October 2017)</a></li> 549<li class="toctree-l3"><a class="reference internal" href="changes.html#rc7-20th-of-october-2017">1.0.0-rc7 (20th of October 2017)</a></li> 550<li class="toctree-l3"><a class="reference internal" href="changes.html#rc6-11th-of-october-2017">1.0.0-rc6 (11th of October 2017)</a></li> 551<li class="toctree-l3"><a class="reference internal" href="changes.html#rc5-25th-of-september-2017">1.0.0-rc5 (25th of September 2017)</a></li> 552<li class="toctree-l3"><a class="reference internal" href="changes.html#rc4-12th-of-september-2017">1.0.0-rc4 (12th of September 2017)</a></li> 553<li class="toctree-l3"><a class="reference internal" href="changes.html#rc3-28th-of-august-2017">1.0.0-rc3 (28th of August 2017)</a></li> 554<li class="toctree-l3"><a class="reference internal" href="changes.html#rc2-12th-of-august-2017">1.0.0-rc2 (12th of August 2017)</a></li> 555<li class="toctree-l3"><a class="reference internal" href="changes.html#rc1-8th-of-august-2017">1.0.0-rc1 (8th of August 2017)</a></li> 556</ul> 557</li> 558<li class="toctree-l2"><a class="reference internal" href="changes.html#x-series-july-2017">0.x series (July 2017)</a><ul> 559<li class="toctree-l3"><a class="reference internal" href="changes.html#st-of-july-2017">0.6.0 (31st of July 2017)</a></li> 560<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-july-2017">0.5.4 (20th of July 2017)</a></li> 561<li class="toctree-l3"><a class="reference internal" href="changes.html#id12">0.5.3 (18th of July 2017)</a></li> 562<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-june-2017">0.5.2 (30th of June 2017)</a></li> 563<li class="toctree-l3"><a class="reference internal" href="changes.html#id13">0.5.1 (24th of June 2017)</a></li> 564<li class="toctree-l3"><a class="reference internal" href="changes.html#st-of-june-2017">0.5.0 (21st of June 2017)</a></li> 565<li class="toctree-l3"><a class="reference internal" href="changes.html#id14">0.4.6 (14th of June 2017)</a></li> 566<li class="toctree-l3"><a class="reference internal" href="changes.html#id15">0.4.5 (12th of June 2017)</a></li> 567<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-may-2017">0.4.4 (20th of May 2017)</a></li> 568<li class="toctree-l3"><a class="reference internal" href="changes.html#id16">0.4.3 (10th of May 2017)</a></li> 569<li class="toctree-l3"><a class="reference internal" href="changes.html#rd-of-may-2017">
5690.4.2 (3rd of May 2017)</a></li> 570<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-april-2017">0.4.1 (20th of April 2017)</a></li> 571<li class="toctree-l3"><a class="reference internal" href="changes.html#id17">0.4.0 (20th of April 2017)</a></li> 572<li class="toctree-l3"><a class="reference internal" href="changes.html#id18">0.3.2 (7th of April 2017)</a></li> 573<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-march-2017">0.3.1 (24th of March 2017)</a></li> 574<li class="toctree-l3"><a class="reference internal" href="changes.html#id19">0.3.0 (20th of March 2017)</a></li> 575<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-january-2017">0.2.0 (13th of January 2017)</a></li> 576<li class="toctree-l3"><a class="reference internal" href="changes.html#rd-of-october-2016">0.1.2 (3rd of October 2016)</a></li> 577<li class="toctree-l3"><a class="reference internal" href="changes.html#th-of-july-2016">0.1.1 (30th of July 2016)</a></li> 578<li class="toctree-l3"><a class="reference internal" href="changes.html#id20">0.0.1</a></li> 579</ul> 580</li> 581</ul> 582</li> 583</ul> 584</div> 585</section> 586</section> 587 588 589 </div> 590 </div> 591 <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer"> 592 <a href="installation.html" class="btn btn-neutral float-right" title="Installation" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a> 593 </div> 594 595 <hr/> 596 597 <div role="contentinfo"> 598 <p>© Copyright 2016-, The fMRIPrep developers.</p> 599 </div> 600 601 Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a 602 <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a> 603 provided by <a href="https://readthedocs.org">Read the Docs</a>. 604 605 606</footer> 607 </div> 608 </div> 609 </section> 610 </div> 611
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