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height:1px; background: #ededed; border: 0px;"> 176 <!-- <div id='sib_body' style="min-height: 600px;"> --> 177 178 179<style type="text/css"> 180#content a, #content a:visited 181{ 182 color:#444; 183 text-decoration: none; 184} 185#content a:hover 186{ 187 color:red; 188 text-decoration: none; 189} 190h1 191{ 192 font-size: 16px; 193} 194div#content 195 { 196 font: 11pt Verdana, Helvetica, sans-serif; 197 text-align: justify; 198 } 199body{ margin:0;} 200</style> 201 202<div id="content" style="padding: 20px; padding-right: 60px; padding-left: 60px; padding-top: 50px;"> 203 204 <h1>We hope SwissDock has been useful for your research. If so, please cite the following articles:</h1><br><br> 205 206 <a href="https://doi.org/10.1093/nar/gkae300" target="_blank"> 207 Bugnon M, Röhrig UF, Goullieux M, Perez MAS, Daina A, Michielin O, Zoete V. SwissDock 2024: major enhancements for small-molecule docking with Attracting Cavities and AutoDock Vina. <em>Nucleic Acids Res.</em> <b>2024</b>, <em>52</em> (W1), W324-W332. DOI: 10.1093/nar/gkae300.</a><br><br> 208 209 <a href="https://doi.org/10.1093/nar/gkr366" target="_blank"> 210 Grosdidier A, Zoete V, Michielin O. SwissDock, a protein-small molecule docking web service based on EADock DSS. <em>Nucleic Acids Res.</em> <b>2011</b>, <em>39</em> (Web Server issue), W270-W277. DOI: 10.1093/nar/gkr366</a><br><br><br> 211 212 If you used Attracting Cavities please cite also:<br><br> 213 214 <a href="https://pubs.acs.org/doi/10.1021/acs.jcim.3c00054" target="_blank">
215 Röhrig UF, Goullieux M, Bugnon M, Zoete V. Attracting Cavities 2.0: improving the flexibility and robustness for small-molecule docking. <em>J. Chem. Inf. Model.</em>, <b>2023</b>, <em>63</em> (12), 3925â3940, DOI: 10.1021/acs.jcim.3c00054</a><br><br> 216 217 <a href="https://onlinelibrary.wiley.com/doi/10.1002/jcc.24249" target="_blank"> 218 Zoete V, Schuepbach T, Bovigny C, Chaskar P, Daina A, Röhrig UF, Michielin O. Attracting Cavities for Docking. Replacing the Rough Energy Landscape of the Protein by a Smooth Attracting Landscape. <em>J. Comput. Chem.</em>, <b> 2016</b>, <em>37</em> (4), 437â447. DOI: 10.1002/jcc.24249</a><br><br><br> 219 220 If you used Attracting Cavities for covalent docking, please cite also:<br><br> 221 222 <a href="https://doi.org/10.1021/acs.jcim.3c01055" target="_blank"> 223 Goullieux M, Zoete V, Röhrig UF. Two-Step Covalent Docking with Attracting Cavities. <em>J. Chem. Inf. Model.</em>, <b> 2023</b>, <em>63</em> (24), 7847-7859. DOI: 10.1021/acs.jcim.3c01055</a><br><br><br> 224 225 And the following ones if you used AutoDock Vina:<br><br> 226 227 <a href="https://pubs.acs.org/doi/10.1021/acs.jcim.1c00203" target="_blank"> 228 Eberhardt J, Santos-Martins D, Tillack AF, Forli S. AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings. <em>J. Chem. Inf. Model.</em>, <b>2021</b>, <em>61</em> (8), 3891â3898, DOI: 10.1021/acs.jcim.1c00203</a><br><br> 229 230 <a href="https://onlinelibrary.wiley.com/doi/10.1002/jcc.21334" target="_blank"> 231 Trott O, Olson AJ. AutoDock Vina: Improving the Speed and Accuracy of Docking with a New Scoring Function, Efficient Optimization, and Multithreading. <em>J. Comput. Chem.</em>, <b>2010</b>, <em>31</em> (2), 455â461, DOI: 10.1002/jcc.21334</a> 232 233 234</div> 235 236 237 </div> 238</div> 239 240<!-- ********************************************************************************************** --> 241<!-- START OF FOOTER information at the bottom of the page --> 242<div id='sib_footer'> 243 <div id='sib_footer_content'> 244 <a href="https://www.sib.swiss"><img src="/images/sib_emblem_trans_background.png" height="35px"></a> 245 This Web tool is operated by the <a href="https://www.molecular-modelling.ch">Molecular Modelling Group</a> of the <a href="https://www.unil.ch">University of Lausanne</a> and the <a href="https://www.sib.swiss">SIB Swiss Institute of Bioinformatics</a> | <a href="http://www.swissdock.ch/termsofuse.php">Terms of use</a> | <a href="https://www.sib.swiss/privacy-policy">SIB privacy policy</a> 246 </div> 247</div> 248<!-- END OF FOOTER --> 249<!-- ********************************************************************************************** --> 250 251 252 253</body> 254</html> 255 256 257
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