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1,"inlineLegend":{"description":"Specify whether to show legend in a single horizontal line?","type":"boolean"},"legendTitle":{"description":"If defined, show legend title on the top or left","type":"string"},"linePattern":{"additionalProperties":false,"description":"Specify the pattern of dashes and gaps for `rule` marks.","properties":{"size":{"type":"number"},"type":{"enum":["triangleLeft","triangleRight"],"type":"string"}},"required":["type","size"],"type":"object"},"linkConnectionType":{"description":"Specify the connetion type of `betweenLink` marks.\\n\\n__Default__: `\\"corner\\"`","enum":["straight","curve","corner"],"type":"string"},"linkMinHeight":{"description":"The minimum height of `withinLink` and `betweenLink` marks. Unit is a percentagle. __Default__: `0.5`","type":"number"},"linkStyle":{"description":"The style of `withinLink` and `betweenLink` marks. __Default__: `\'circular\'` `\'elliptical\'` will be used as a default option.","enum":["elliptical","circular","straight","experimentalEdgeBundling"],"type":"string"},"matrixExtent":{"description":"Determine to show only one side of the diagonal in a HiGlass matrix. __Default__: `\\"full\\"`","enum":["full","upper-right","lower-left"],"type":"string"},"mouseOver":{"$ref":"#/definitions/EventStyle","description":"Customize visual effects of `mouseOver` events on marks."},"outline":{"type":"string"},"outlineWidth":{"type":"number"},"select":{"$ref":"#/definitions/EventStyle","description":"Customize visual effects of `rangeSelect` events on marks ."},"textAnchor":{"description":"Specify the alignment of `text` marks to a given point.","enum":["start","middle","end"],"type":"string"},"textFontSize":{"description":"Specify the font size of `text` marks. Can also be specified using the `size` channel option of `text` marks.","type":"number"},"textFontWeight":{"description":"Specify the font weight of `text` marks.","enum":["bold","normal"],"type":"string"},"textStroke":{"description":"Specify the stroke of `text` marks. Can also be specified using the `stroke` channel option of `text` marks.","type":"string"},"textStrokeWidth":{"description":"Specify the stroke width of `text` marks. Can also be specified using the `strokeWidth` channel option of `text` marks.","type":"number"}},"type":"object"},"SvTypeTransform":{"additionalProperties":false,"properties":{"firstBp":{"additionalProperties":false,"description":"Based on the BEDPE, infer SV types. SV types are specified as one of the following strings: DUP, TRA, DEL, t2tINV, h2hINV.","properties":{"chrField":{"type":"string"},"posField":{"type":"string"},"strandField":{"type":"string"}},"required":["chrField","posField","strandField"],"type":"object"},"newField":{"type":"string"},"secondBp":{"additionalProperties":false,"description":"Based on the BEDPE, infer SV types. SV types are specified as one of the following strings: DUP, TRA, DEL, t2tINV, h2hINV.","properties":{"chrField":{"type":"string"},"posField":{"type":"string"},"strandField":{"type":"string"}},"required":["chrField","posField","strandField"],"type":"object"},"type":{"const":"svType","type":"string"}},"required":["type","firstBp","secondBp","newField"],"type":"object"},"TemplateTrack":{"additionalProperties":false,"description":"Template specification that will be internally converted into `SingleTrack` for rendering.","properties":{"_assignedHeight":{"type":"number"},"_assignedWidth":{"description":"Internal: Used for responsive spec","type":"number"},"_invalidTrack":{"description":"internal","type":"boolean"},"_renderingId":{"description":"internal","type":"string"},"assembly":{"$ref":"#/definitions/Assembly","description":"A string that specifies the genome builds to use. Currently support `\\"hg38\\"`, `\\"hg19\\"`, `\\"hg18\\"`, `\\"hg17\\"`, `\\"hg16\\"`, `\\"mm10\\"`, `\\"mm9\\"`, and `\\"unknown\\"`.\\n\\n__Note:__: with `\\"unknown\\"` assembly, genomic axes do not show chrN: in labels."},"centerRadius":{"description":"Proportion of the radius of the center white space.\\n\\n__Default:__ `0.3`","type":"number"},"data":{"$ref":"#/definitions/DataDeep"},"encoding":{"additionalProperties":{"$ref":"#/definitions/Channel"},"type":"object"},"endAngle":{"description":"Specify the end angle (in the range of [0, 360]) of circular tracks (`{\\"layout\\": \\"circular\\"}`).","type":"number"},"height":{"description":"Specify the track height in pixels.","type":"number"},"id":{"type":"string"}
1,"innerRadius":{"description":"Specify the inner radius of tracks when (`{\\"layout\\": \\"circular\\"}`).","type":"number"},"layout":{"$ref":"#/definitions/Layout","description":"Specify the layout type of all tracks."},"linkingId":{"description":"Specify an ID for [linking multiple views](http://gosling-lang.org/docs/user-interaction#linking-views)","type":"string"},"orientation":{"$ref":"#/definitions/Orientation","description":"Specify the orientation."},"outerRadius":{"description":"Specify the outer radius of tracks when `{\\"layout\\": \\"circular\\"}`.","type":"number"},"overlayOnPreviousTrack":{"type":"boolean"},"prerelease":{"additionalProperties":false,"description":"internal","type":"object"},"spacing":{"description":"- If `{\\"layout\\": \\"linear\\"}`, specify the space between tracks in pixels;\\n\\n- If `{\\"layout\\": \\"circular\\"}`, specify the space between tracks in percentage ranging from 0 to 100.","type":"number"},"startAngle":{"description":"Specify the start angle (in the range of [0, 360]) of circular tracks (`{\\"layout\\": \\"circular\\"}`).","type":"number"},"static":{"description":"Whether to disable [Zooming and Panning](http://gosling-lang.org/docs/user-interaction#zooming-and-panning), __Default:__ `false`.","type":"boolean"},"style":{"$ref":"#/definitions/Style","description":"Define the [style](http://gosling-lang.org/docs/visual-channel#style-related-properties) of multive views. Will be overriden by the style of children elements (e.g., view, track)."},"subtitle":{"type":"string"},"template":{"type":"string"},"title":{"description":"If defined, will show the textual label on the left-top corner of a track.","type":"string"},"width":{"description":"Specify the track width in pixels.","type":"number"},"xAxis":{"$ref":"#/definitions/AxisPosition","description":"not supported"},"xDomain":{"anyOf":[{"$ref":"#/definitions/DomainInterval"},{"$ref":"#/definitions/DomainChrInterval"},{"$ref":"#/definitions/DomainChr"}],"description":"Specify the visible region of genomic x-axis"},"xOffset":{"description":"Specify the x offset of views in the unit of pixels","type":"number"},"yDomain":{"anyOf":[{"$ref":"#/definitions/DomainInterval"},{"$ref":"#/definitions/DomainChrInterval"},{"$ref":"#/definitions/DomainChr"}],"description":"Specify the visible region of genomic y-axis"},"yOffset":{"description":"Specify the y offset of views in the unit of pixels","type":"number"},"zoomLimits":{"$ref":"#/definitions/ZoomLimits"}},"required":["data","height","template","width"],"type":"object"},"Text":{"additionalProperties":false,"properties":{"domain":{"description":"Values of the data","items":{"type":"string"},"type":"array"},"field":{"description":"Name of the data field","type":"string"},"range":{"description":"Ranges of visual channel values","items":{"type":"string"},"type":"array"},"type":{"description":"Specify the data type","enum":["quantitative","nominal"],"type":"string"}},"type":"object"},"Tooltip":{"additionalProperties":false,"properties":{"alt":{"description":"Name of the data field for showing in the tooltip. Will use the field name if not specified.","type":"string"},"field":{"description":"Specifiy a data field whose value will show in the tooltip.","type":"string"},"format":{"description":"format of the data value.","type":"string"},"type":{"$ref":"#/definitions/FieldType","description":"Type of the data filed."}},"required":["field","type"],"type":"object"},"Track":{"anyOf":[{"$ref":"#/definitions/SingleTrack"},{"$ref":"#/definitions/OverlaidTrack"},{"$ref":"#/definitions/DataTrack"},{"$ref":"#/definitions/TemplateTrack"}]},"VCFData":{"additionalProperties":false,"description":"The Variant Call Format (VCF).","properties":{"indexUrl":{"description":"URL link to the tabix index file","type":"string"},"sampleLength":{"description":"The maximum number of rows to be loaded from the URL. __Default:__ `1000`","type":"number"},"type":{"const":"vcf","type":"string"},"url":{"description":"URL link to the VCF file","type":"string"}},"required":["type","url","indexUrl"],"type":"object"},"ValueExtent":{"anyOf":[{"items":{"type":"string"},"type":"array"},{"items":{"type":"number"},"type":"array"}]},"VectorData":{"additionalProperties":false,"description":"One-dimensional quantitative values along genomic position (e.g., bigwig) can be converted into HiGlass\' `\\"vector\\"` format data. Find out more about this format at [HiGlass Docs](
1https://docs.higlass.io/data_preparation.html#bigwig-files).","properties":{"aggregation":{"$ref":"#/definitions/BinAggregate","description":"Determine aggregation function to apply within bins. __Default__: `\\"mean\\"`"},"binSize":{"description":"Binning the genomic interval in tiles (unit size: 256).","type":"number"},"column":{"description":"Assign a field name of the middle position of genomic intervals.","type":"string"},"end":{"description":"Assign a field name of the end position of genomic intervals.","type":"string"},"start":{"description":"Assign a field name of the start position of genomic intervals.","type":"string"},"type":{"const":"vector","type":"string"},"url":{"description":"Specify the URL address of the data file.","type":"string"},"value":{"description":"Assign a field name of quantitative values.","type":"string"}},"required":["type","url","column","value"],"type":"object"},"VisibilityCondition":{"anyOf":[{"$ref":"#/definitions/SizeVisibilityCondition"},{"$ref":"#/definitions/ZoomLevelVisibilityCondition"}]},"X":{"additionalProperties":false,"properties":{"aggregate":{"$ref":"#/definitions/Aggregate","description":"Specify how to aggregate data. __Default__: `undefined`"},"axis":{"$ref":"#/definitions/AxisPosition","description":"Specify where should the axis be put"},"domain":{"$ref":"#/definitions/GenomicDomain","description":"Values of the data"},"field":{"description":"Name of the data field.","type":"string"},"grid":{"description":"Whether to display grid. __Default__: `false`","type":"boolean"},"legend":{"description":"Whether to display legend. __Default__: `false`","type":"boolean"},"linkingId":{"description":"Users need to assign a unique linkingId for [linking views](/docs/user-interaction#linking-views) and [Brushing and Linking](/docs/user-interaction#brushing-and-linking)","type":"string"},"range":{"$ref":"#/definitions/ValueExtent","description":"Values of the visual channel."},"type":{"const":"genomic","description":"Specify the data type.","type":"string"}},"type":"object"},"Y":{"additionalProperties":false,"properties":{"aggregate":{"$ref":"#/definitions/Aggregate","description":"Specify how to aggregate data. __Default__: `undefined`"},"axis":{"$ref":"#/definitions/AxisPosition","description":"Specify where should the axis be put"},"baseline":{"description":"Custom baseline of the y-axis. __Default__: `0`","type":["string","number"]},"domain":{"anyOf":[{"$ref":"#/definitions/ValueExtent"},{"$ref":"#/definitions/GenomicDomain"}],"description":"Values of the data"},"field":{"description":"Name of the data field.","type":"string"},"flip":{"description":"Whether to flip the y-axis. This is done by inverting the `range` property. __Default__: `false`","type":"boolean"},"grid":{"description":"Whether to display grid. __Default__: `false`","type":"boolean"},"legend":{"description":"Whether to display legend. __Default__: `false`","type":"boolean"},"linkingId":{"description":"Users need to assign a unique linkingId for [linking views](/docs/user-interaction#linking-views) and [Brushing and Linking](/docs/user-interaction#brushing-and-linking)","type":"string"},"range":{"$ref":"#/definitions/ValueExtent","description":"Values of the visual channel."},"type":{"description":"Specify the data type.","enum":["quantitative","nominal","genomic"],"type":"string"},"zeroBaseline":{"description":"Specify whether to use zero baseline. __Default__: `true`","type":"boolean"}},"type":"object"},"ZoomLevelVisibilityCondition":{"additionalProperties":false,"properties":{"conditionPadding":{"description":"Specify the buffer size (in pixel) of width or height when calculating the visibility.\\n\\n__Default__: `0`","type":"number"},"measure":{"const":"zoomLevel","description":"Specify which aspect of the `target` will be compared to the `threshold`.","type":"string"},"operation":{"$ref":"#/definitions/LogicalOperation","description":"A string that pecifies the logical operation to conduct between `threshold` and the `measure` of `target`. Support\\n\\n- greater than : \\"greater-than\\", \\"gt\\", \\"GT\\"\\n\\n- less than : \\"less-than\\", \\"lt\\", \\"LT\\"\\n\\n- greater than or equal to : \\"greater-than-or-equal-to\\", \\"gtet\\", \\"GTET\\"\\n\\n- less than or equal to : \\"less-than-or-equal-to\\", \\"ltet\\", \\"LTET\\""},"target":{"description":"Target specifies the object that you want to compare with the threshold.","enum":["track","mark"],"type":"string"},"threshold":{"description":"Set a threshold in the unit of base pairs (bp)","type":"number"},"transitionPadding":{"description":"Specify the buffer size (in pixel) of width or height for smooth transition.\\n\\n__Default__: `0`","type":"number"}},"required":["measure","operation","target","threshold"],"type":"object"},"ZoomLimits":{"items":[{"type":["number","null"]},{"type":["number","null"]}],"maxItems":2,"minItems":2,"type":"array"}}}')}}]);
Line numbers count LF bytes from the start of the resource, as the search results do. Vendor segments are library code the classifier recognised; they are stored but not indexed. Bytes are shown as Latin1 characters, one per byte.