https://gosling-lang.org/assets/js/98923c68.c4c7a0e4.js

1"use strict";(self.webpackChunkgosling_website=self.webpackChunkgosling_website||[]).push([[7609],{63741:(e,s,n)=>{n.r(s),n.d(s,{assets:()=>o,contentTitle:()=>r,default:()=>h,frontMatter:()=>l,metadata:()=>a,toc:()=>c});var i=n(74848),t=n(28453);const l={title:"Public Datasets"},r=void 0,a={id:"public-datasets",title:"Public Datasets",description:"To help using Gosling for the first time, this document provides some useful datasets that can be directly used in Gosling.",source:"@site/versioned_docs/version-0.10.1.1/public-datasets.md",sourceDirName:".",slug:"/public-datasets",permalink:"/docs/0.10.1.1/public-datasets",draft:!1,unlisted:!1,editUrl:"https://github.com/gosling-lang/gosling-website/edit/main/versioned_docs/version-0.10.1.1/public-datasets.md",tags:[],version:"0.10.1.1",frontMatter:{title:"Public Datasets"},sidebar:"docs",previous:{title:"Integrating non-Gosling visualizations",permalink:"/docs/0.10.1.1/non-gos-vis"},next:{title:"Frequently Asked Questions",permalink:"/docs/0.10.1.1/FAQ"}},o={},c=[{value:"List of Plain Datasets",id:"list-of-plain-datasets",level:2},{value:"List of Pre-aggregated Datasets",id:"list-of-pre-aggregated-datasets",level:2}];function d(e){const s={a:"a",blockquote:"blockquote",code:"code",h2:"h2",hr:"hr",li:"li",ol:"ol",p:"p",pre:"pre",strong:"strong",ul:"ul",...(0,t.R)(),...e.components};return(0,i.jsxs)(i.Fragment,{children:[(0,i.jsx)(s.p,{children:"To help using Gosling for the first time, this document provides some useful datasets that can be directly used in Gosling."}),"\n",(0,i.jsx)(s.p,{children:"For the flexible data exploration, Gosling supports two different kinds of datasets:"}),"\n",(0,i.jsxs)(s.ol,{children:["\n",(0,i.jsxs)(s.li,{children:[(0,i.jsx)(s.strong,{children:"Plain Datasets"}),": For the convenience, Gosling allows to use several data formats directly in the system without requiring to preprocess data or set up a dedicated server (i.e., HiGlass server)."]}),"\n"]}),"\n",(0,i.jsxs)(s.ol,{start:"2",children:["\n",(0,i.jsxs)(s.li,{children:[(0,i.jsx)(s.strong,{children:"Pre-aggregated Datasets"}),": To allow scalable data exploration, Gosling supports using HiGlass' preprocessed datasets which requires the dedicated HiGlass server."]}),"\n"]}),"\n",(0,i.jsx)(s.p,{children:"In this document, we provide a list of public datasets in those two classes. For the pre-aggregated ones listed below, we provide them in our Gosling's server, so you do not need to set up your own HiGlass server to visualize them."}),"\n",(0,i.jsxs)(s.blockquote,{children:["\n",(0,i.jsxs)(s.p,{children:[(0,i.jsx)(s.strong,{children:"Tip."}),' When you are using online editor, you can check out a "Data Preview" panel on the right-bottom part of the interface to see how the actual data looks like.']}),"\n"]}),"\n",(0,i.jsx)(s.h2,{id:"list-of-plain-datasets",children:"List of Plain Datasets"}),"\n",(0,i.jsxs)(s.ul,{children:["\n",(0,i.jsx)(s.li,{children:"Type: CSV"}),"\n",(0,i.jsxs)(s.li,{children:["URL: ",(0,i.jsx)(s.a,{href:"https://raw.githubusercontent.com/sehilyi/gemini-datasets/master/data/UCSC.HG38.Human.CytoBandIdeogram.csv",children:"https://raw.githubusercontent.com/sehilyi/gemini-datasets/master/data/UCSC.HG38.Human.CytoBandIdeogram.csv"})]}),"\n",(0,i.jsx)(s.li,{children:"Description: hg38 cytoband"}),"\n",(0,i.jsx)(s.li,{children:"Soruce: UCSC"}),"\n"]}),"\n",(0,i.jsx)(s.hr,{}),"\n",(0,i.jsxs)(s.ul,{children:["\n",(0,i.jsx)(s.li,{children:"Type: BigWig"}),"\n",(0,i.jsxs)(s.li,{children:["URL: ",(0,i.jsx)(s.a,{href:"https://s3.amazonaws.com/gosling-lang.org/data/4DNFIMPI5A9N.bw",children:"https://s3.amazonaws.com/gosling-lang.org/data/4DNFIMPI5A9N.bw"})]}),"\n",(0,i.jsxs)(s.li,{children:["Source: 4DN (",(0,i.jsx)(s.a,{href:"https://data.4dnucleome.org/files-processed/4DNFIMPI5A9N/#file-overview",children:"https://data.4dnucleome.org/files-processed/4DNFIMPI5A9N/#file-overview"}),")"]}),"\n"]}),"\n",(0,i.jsx)(s.hr,{}),"\n",(0,i.jsxs)(s.ul,{children:["\n",(0,i.jsx)(s.li,{children:"Type: CSV"}),"\n",(0,i.jsxs)(s.li,{children:["URL: ",(0,i.jsx)(s.a,{href:"https://s3.amazonaws.com/gosling-lang.org/data/COVID/NC_045512.2-Genes.csv",children:"https://s3.amazonaws.com/gosling-lang.org/data/COVID/NC_045512.2-Genes.csv"})]}),"\n",(0,i.jsx)(s.li,{children:"Description: Gene Annotations of SARS-CoV-2 in NC_045512.2"}),"\n",(0,i.jsxs)(s.li,{children:["Source: ",(0,i.jsx)(s.a,{href:"https://genome.ucsc.edu/covid19.html",children:"https://genome.ucsc.edu/covid19.html"})]}),"\n"]}),"\n",(0,i.jsx)(s.hr,{}),"\n",(0,i.jsxs)(s.ul,{children:["\n",(0,i.jsx)(s.li,{children:"Type: CSV"}),"\n",(0,i.jsxs)(s.li,{children:["URL: ",(0,i.jsx)(s.a,{href:"https://raw.githubusercontent.com/sehilyi/gemini-datasets/master/data/circos-segdup-edited.txt",children:"https://raw.githubusercontent.com/sehilyi/gemini-datasets/master/data/circos-segdup-edited.txt"})]}

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