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168Background</a></li> 169 170 171 172 173 174 <li><a href="//miappe.github.io/miappe-website/publications/">Publications</a></li> 175 176 177 178 179 180 <li><a href="//miappe.github.io/miappe-website/support/">Support</a></li> 181 182 183 184 185 186 <li><a href="//miappe.github.io/miappe-website/trainings/">Trainings</a></li> 187 188 189 190 191 192 <li><a href="//miappe.github.io/miappe-website/releases/">Releases</a></li> 193 194 195 196 197 198 <li><a href="//miappe.github.io/miappe-website/people/">People</a></li> 199 200 201 202 203 204 <li><a href="//miappe.github.io/miappe-website/data/">Data</a></li> 205 206 207 208 209 210 <li><a href="//miappe.github.io/miappe-website/projects/">Projects</a></li> 211 212 213 214 215 216 217 </ul> 218 <!-- <ul class="menu dropdown float-right" data-dropdown-menu data-description="functional"> 219 <li class="functional"><a href="#"><i class="icon icon-generic" data-icon="d"></i> Share this</a> 220 <ul class="menu js"> 221 <li><a href="#">Item 1A Loooong</a></li> 222 <li> 223 <a href='#'> Item 1 sub</a> 224 <ul class='menu'> 225 <li><a href='#'>Item 1 subA</a></li> 226 <li><a href='#'>Item 1 subB</a></li> 227 <li> 228 <a href='#'> Item 1 sub</a> 229 <ul class='menu'> 230 <li><a href='#'>Item 1 subA</a></li> 231 <li><a href='#'>Item 1 subB</a></li> 232 </ul> 233 </li> 234 <li> 235 <a href='#'> Item 1 sub</a> 236 <ul class='menu'> 237 <li><a href='#'>Item 1 subA</a></li> 238 </ul> 239 </li> 240 </ul> 241 </li> 242 <li><a href="#">Item 1B</a></li> 243 </ul> 244 245 </ul> --> 246 </nav> 247 <!-- /local-nav --> 248 249 </div> 250 251 </header> 252 253 </div> 254 </div> 255 256 <div id="content" role="main" class="row"> 257 258 <section> 259 260 <!-- Your menu structure should make a breadcrumb redundant, but if a breadcrump is needed uncomment the below --> 261 <!-- 262 <nav aria-label="You are here:" role="navigation"> 263 <ul class="breadcrumbs"> 264 <li><a href="#">Home</a></li> 265 <li><a href="#">Parent</a></li> 266 <li class="disabled">Disabled</li> 267 <li> 268 <span class="show-for-sr">Current: </span> This page 269 </li> 270 </ul> 271 </nav> 272 --> 273 274 <div class="row" id="main-content-area"> 275 276 <div class="medium-9 columns"> 277 278 <h3>Overview</h3> 279 280The Minimum Information About Plant Phenotyping Experiments (MIAPPE) is a data standard designed to harmonize the description 281of experimental and computed data to enable its sharing, publication and reuse. 282It is designed to handle datasets of crops and woody plant grown in greenhouses, single fields or experimental networks overs 283one to several years. 284 285 286The main elements of a MIAPPE datasets are shown on the figure below and consist of the Dataset itself (or Investigation 287following ISA), the Study, the Biological Material and the Observation Variables. 288</br> 289<img src="//miappe.github.io//miappe-website/static/MIAPPE-OVERVIEW-nutshell.png" /> 290</br> 291See the latest <a href="https://github.com/MIAPPE/MIAPPE">MIAPPE specifications</a> 292(<a href="https://github.com/MIAPPE/MIAPPE/blob/master/MIAPPE_Checklist_Data_Model.pdf">PDF format</a> 293<a href="https://github.com/MIAPPE/MIAPPE/tree/master/Templates">data exchange templates </a>) for a full description 294of the standard. 295 296<h4>Dataset (Investigation)</h4> 297It contains the basic information shared by any type of datasets: title, authors list, description, a DOI for citability, etc.... 298 299<h4>Studies</h4> 300A MIAPPE dataset contains one to many Studies, each studies being one experiment in one location over one to several years. 301This multiannual capabilities allows to handle perenial plants such as trees or grape. A Study can also be virtual to hold the 302result of a computation voer one to several experimental studies. It contains also the geographical coordinates of the Study. 303 304<h4>Biological Material</h4> 305This is one of the two most essential description to enable FAIR data sharing. 306It is the biological material being studied (e.g. plants grown from a certain bag or seed, or plants grown in a particular 307field) including identification and traceability. The original source of that material (e.g., the seeds or the original plant 308cloned) is called the material source, which, when held by a material repository, should have its stock identified. 309 310<h4>Observed Variable</h4> 311An observed variable describes how a measurement has been made. It typically takes the form of a measured characteristic of 312the observation unit (plant or environmental trait), associated to the method and unit of measurement. Multiple variables with 313the same combination of trait, method and scale can be used in association with different plant parts (leaf 1, leaf 2), 314when this distinction is necessary for observations referring to different parts of the same observation unit. 315 316<h3>Implementations</h3> 317MIAPPE is a pure specification that has been implemented in several systems and tools: 318<ul> 319 <li> 320 MIAPPE is a key element in the <a href="https://rdmkit.elixir-europe.org/plant_sciences">RDM Kit plant domain</a> as well 321 as the <a href="https://rdmkit.elixir-europe.org/plant_phenomics_assembly">plant phenomic tool assembly</a> 322 </li> 323 <li>Databases such as <a href="https://www.phis.inrae.fr/">PHIS</a>, <a href="https://urgi.versailles.inra.fr/gnpis">GnpIS</a>, ...</li> 324 <li>File archives and in particular ISA-MIAPPE</li> 325 <li>the <a href="https://brapi.org">Breeding API</a> web services</li> 326</ul> 327 328 329 330 </div> 331 332 <div class="medium-3 columns sidebar" data-sticky-container> 333 334 335 </div> 336 337 </div> 338 339 </section> 340 341 </div><!-- /.container --> 342 343 <footer> 344 <!-- Optional local footer (insert citation / project-specific copyright / etc here --> 345 <!-- <div id="local-footer"> 346 <div class="row">
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