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34  <p class="eyebrow">News</p>
35  <h1>Releases and updates</h1>
36  <p class="lead">New atlases and browsers are announced here as they are published.</p>
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38<div class="wrap narrow"><ul class="timeline"><li><time>September 2026</time><div>The Susztaklab Kidney Biobank website has been redesigned. All resources are now organized by species and data type, and can be searched from the <a href='/'>home page</a>.</div></li><li><time>July 2026</time><div>The <a href="https://susztaklab.com/samui2/from.html?url=susztaklab.com/samui/files/&s=FK1" target="_blank" rel="noopener">Human Fetal Kidney Single-Cell Spatial Atlas</a> accompanying Levinsohn, Grindel et al., <i>Nature Genetics</i> 2026 is available.</div></li><li><time>April 2026</time><div>The <a href="https://susztaklab.com/samui/from.html?url=susztaklab.com/samui/files/bernard/&s=output_1001&s=output_1003&s=output_1004&s=output_1005&s=output_1006&s=output_1007&s=output_1008&s=output_1009&s=output_1010&s=output_1011&s=output_1012&s=output_1013&s=output_HK2695&s=output_HK2753&s=output_HK3106" target="_blank" rel="noopener">Human Single-Cell Spatial Atlas of diabetic kidney disease</a> (Dumoulin et al., <i>Nature</i> 2026) is available.</div></li><li><time>January 2026</time><div>The <a href="/ZSF1_RAASi" target="_blank" rel="noopener">RAAS Inhibition in Diabetic Kidney Disease Atlas</a> (Balzer et al., <i>J Am Soc Nephrol</i> 2026) is available.</div></li><li><time>August 2025</time><div>The <a href="/pl/pQTL" target="_blank" rel="noopener">Human Kidney Protein QTL Atlas</a> (Hirohama et al., <i>Nature Medicine</i> 2025) is available.</div></li><li><time>2025</time><div>The <a href="https://susztaklab.com/SISKA/mouse" target="_blank" rel="noopener">Multispecies-Integrated Single-Cell Kidney Atlas (SISKA)</a> and the <a href="/rhge" target="_blank" rel="noopener">Rodent–Human Gene Expression Coordination</a> browser (Klötzer et al., <i>Nature Genetics</i> 2025) are available.</div></li><li><time>2025</time><div>The <a href="/GWAS2M/index.php" target="_blank" rel="noopener">eGFR GWAS (2.2 million) and ScoreCard</a> (Liu et al., <i>Science</i> 2025) is available.</div></li><li><time>2024</time><div>Human kidney single-cell, snATAC-seq and spatial resources from Abedini, Levinsohn et al., <i>Nature Genetics</i> 2024, and the rat DOCA multi-omic atlas from Abedini et al., <i>J Clin Invest</i> 2024, are available.</div></li><li><time>July 12, 2022</time><div>Mouse Kidney IRI scRNA-seq (<a href="https://www.nature.com/articles/s41467-022-31772-9" target="_blank" rel="noopener">Balzer et al., <i>Nature Communications</i> 2022</a>) has been released at <a href="/Mouse_IRI_scRNA/index.php" target="_blank" rel="noopener">Mouse Kidney IRI scRNA-seq Atlas</a>.</div></li><li><time>January 31, 2022</time><div>Kidney meQTL Atlas, eGFRcrea GWAS meta-analysis (N &gt; 1.5 million), Human Kidney Open Chromatin Atlas and Kidney eQTL meta-analysis (<a href="https://www.nature.com/articles/s41588-022-01097-w" target="_blank" rel="noopener">Liu et al., <i>Nature Genetics</i> 2022</a>) have been released.</div></li><li><time>April 12, 2021</time><div>Adult Human Kidney snATAC-seq Atlas and Kidney Cell Fraction eQTL Atlas (<a href="https://www.nature.com/articles/s41588-021-00909-9" target="_blank" rel="noopener">Sheng et al., <i>Nature Genetics</i> 2021</a>) have been released.</div></li><li><time>April 12, 2021</time><div>Human Blood mQTL Atlas (<a href="https://www.pnas.org/doi/10.1073/pnas.2005905117" target="_blank" rel="noopener">Sheng et al., <i>PNAS</i> 2020</a>), Developing Mouse Kidney scRNA-seq and snATAC-seq atlases (<a href="https://www.nature.com/articles/s41467-021-22266-1" target="_blank" rel="noopener">Miao et al., <i>Nature Communications</i> 2021</a>) and the Adult Mouse Kidney scRNA-seq Atlas (<a href="https://www.science.org/doi/10.1126/science.aar2131" target="_blank" rel="noopener">Park et al., <i>Science</i> 2018</a>) have been released.</div></li></ul></div>
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59<script id="catalog" type="application/json">{"datasets": [{"title": "eGFR GWAS (2.2 million) and ScoreCard", "category": "Human genetics and QTL atlases", "tags": ["Human", "GWAS", "Browser"], "note": "Meta-analysis of kidney function in more than 2.2 million individuals, with a variant-to-gene ScoreCard.", "url": "https://data.susztaklab.com/GWAS2M/index.php", "papers": [{"label": "Liu et al., Science 2025", "url": "https://www.science.org/doi/10.1126/science.adp4753"}]}, {"title": "eGFR GWAS (1.5 million) and Prioritization", "category": "Human genetics and QTL atlases", "tags": ["Human", "GWAS", "Browser"], "note": "eGFRcrea meta-analysis with target gene prioritization.", "url": "https://data.susztaklab.com/GWAS/index.php", "papers": [{"label": "Liu et al., Nature Genetics 2022", "url": "https://www.nature.com/articles/s41588-022-01097-w"}]}, {"title": "Human Kidney Expression QTL Atlases", "category": "Human genetics and QTL atlases", "tags": ["Human", "eQTL", "Browser"], "note": "Bulk, compartment-specific, cell-fraction and cell-type-interaction eQTLs.", "url": "https://data.susztaklab.com/Kidney_eQTL/index.php", "papers": [{"label": "Qiu et al., Nature Medicine 2018", "url": "https://www.nature.com/articles/s41591-018-0194-4"}, {"label": "Sheng et al., Nature Genetics 2021", "url": "https://www.nature.com/articles/s41588-021-00909-9"}, {"label": "Liu et al., Nature Genetics 2022", "url": "https://www.nature.com/articles/s41588-022-01097-w"}]}, {"title": "Human Kidney Protein QTL Atlas", "category": "Human genetics and QTL atlases", "tags": ["Human", "pQTL", "Browser"], "note": "Proteogenomic landscape of the human kidney and cardio-kidney-metabolic health.", "url": "https://data.susztaklab.com/pl/pQTL", "papers": [{"label": "Hirohama et al., Nature Medicine 2025", "url": "https://doi.org/10.1038/s41591-025-03872-8"}]}, {"title": "Human Kidney Single-Nucleus Multiome QTL Atlas", "category": "Human genetics and QTL atlases", "tags": ["Human", "snMultiome", "eQTL", "caQTL", "Browser"], "note": "Cell-type-resolved expression and chromatin accessibility QTLs (eQTL and caQTL) from single-nucleus multiome profiling of 94 human kidneys, with fine-mapping and colocalization with kidney function GWAS.", "url": "https://35.255.159.98.sslip.io/kidney-snmultiome", "papers": [{"label": "Pan et al., manuscript under review (2026)", "url": null}]}, {"title": "Human Kidney Methylation QTL Atlas", "category": "Human genetics and QTL atlases", "tags": ["Human", "meQTL", "Browser"], "note": "Cytosine methylation quantitative trait loci in human kidney tissue.", "url": "https://data.susztaklab.com/Kidney_meQTL/index.php", "papers": [{"label": "Liu et al., Nature Genetics 2022", "url": "https://www.nature.com/articles/s41588-022-01097-w"}]}, {"title": "Human Blood (CRIC) Methylation QTL Atlas", "category": "Human genetics and QTL atlases", "tags": ["Human", "mQTL", "Browser"], "note": "Whole-blood mQTLs from the Chronic Renal Insufficiency Cohort.", "url": "https://data.susztaklab.com/mqtl/", "papers": [{"label": "Sheng et al., PNAS 2020", "url": "https://www.pnas.org/doi/10.1073/pnas.2005905117"}]}, {"title": "Human Kidney Bulk Gene Expression and Disease Correlation", "category": "Human genetics and QTL atlases", "tags": ["Human", "Bulk RNA-seq", "Browser"], "note": "Tubule and glomerular expression correlated with eGFR and fibrosis.", "url": "https://data.susztaklab.com/Kidney_Fibrosis/index.php", "papers": [{"label": "Beckerman et al., EBioMedicine 2017", "url": "https://www.sciencedirect.com/science/article/pii/S2352396417303675"}]}, {"title": "Human Kidney snATAC-seq (Version 1)", "category": "Human single-cell and epigenome atlases", "tags": ["Human", "snATAC-seq", "IGV"], "note": "12,720 nuclei; 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"https://doi.org/10.1038/s41588-026-02665-0"}]}, {"title": "Human Single-Cell Spatial Atlas of Diabetic Kidney Disease", "category": "Spatial transcriptomics", "tags": ["Human", "Spatial", "Samui"], "note": "Fifteen sections; reveals a B cell-rich subgroup of diabetic kidney disease.", "url": "https://data.susztaklab.com/samui/from.html?url=susztaklab.com/samui/files/bernard/&s=output_1001&s=output_1003&s=output_1004&s=output_1005&s=output_1006&s=output_1007&s=output_1008&s=output_1009&s=output_1010&s=output_1011&s=output_1012&s=output_1013&s=output_HK2695&s=output_HK2753&s=output_HK3106", "papers": [{"label": "Dumoulin et al., Nature 2026", "url": "https://www.nature.com/articles/s41586-026-10363-4"}]}, {"title": "Mouse Kidney scRNA-seq Atlas (UMAP)", "category": "Mouse models", "tags": ["Mouse", "scRNA-seq", "UMAP"], "note": "The original single-cell atlas of the adult mouse kidney.", "url": "https://data.susztaklab.com/EH/park", "papers": [{"label": "Park et al., Science 2018", 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"note": "Regulatory landscape of the developing mouse kidney.", "url": "https://data.susztaklab.com/developing_adult_kidney/igv/", "papers": [{"label": "Miao, Balzer et al., Nature Communications 2021", "url": "https://www.nature.com/articles/s41467-021-22266-1"}]}, {"title": "scRNA-seq of Mouse Acute Kidney Injury (IRI)", "category": "Mouse models", "tags": ["Mouse", "Injury", "scRNA-seq"], "note": "Adaptive versus fibrotic regeneration after ischemia-reperfusion injury.", "url": "https://data.susztaklab.com/Mouse_IRI_scRNA/index.php", "papers": [{"label": "Balzer et al., Nature Communications 2022", "url": "https://www.nature.com/articles/s41467-022-31772-9"}]}, {"title": "scRNA-seq of Mouse Kidney Fibrosis (UUO)", "category": "Mouse models", "tags": ["Mouse", "Fibrosis", "scRNA-seq"], "note": "Tubule-basophil interactions orchestrating kidney fibrosis.", "url": "https://data.susztaklab.com/EH/doke/", "papers": [{"label": "Doke et al., Nature Immunology 2022", "url": "https://www.nature.com/articles/s41590-022-01200-7"}]}, {"title": "scRNA-seq of Mouse Kidney Fibrosis (Folic Acid Nephropathy)", "category": "Mouse models", "tags": ["Mouse", "Fibrosis", "scRNA-seq"], "note": "ESRRA couples metabolism and differentiation in the tubule.", "url": "https://data.susztaklab.com/EH/dhillon/", "papers": [{"label": "Dhillon, Park et al., Cell Metabolism 2021", "url": "https://www.sciencedirect.com/science/article/pii/S1550413120306069"}]}, {"title": "Mouse Kidney Bulk Gene Expression and Disease Correlation", "category": "Mouse models", "tags": ["Mouse", "Bulk RNA-seq", "Browser"], "note": "Bulk expression across mouse kidney disease models.", "url": "https://data.susztaklab.com/Mouse_Model_Exp/index.php", "papers": [{"label": "Hu et al., manuscript in preparation", "url": null}]}, {"title": "snRNA-seq and snATAC-seq of Rat Hypertension and Fibrosis (DOCA)", "category": "Rat models", "tags": ["Rat", "snRNA-seq", "snATAC-seq", "Gene map"], "note": "Gene map of the DOCA rat model and mineralocorticoid receptor antagonist treatment.", "url": "https://data.susztaklab.com/genemap_rat", "papers": [{"label": "Abedini et al., J Clin Invest 2024", "url": "https://doi.org/10.1172/JCI157165"}]}, {"title": "snATAC-seq of Rat Hypertension and Fibrosis (DOCA, IGV)", "category": "Rat models", "tags": ["Rat", "snATAC-seq", "IGV"], "note": "Open chromatin tracks for the DOCA rat model.", "url": "https://data.susztaklab.com/DOCA_Rat_snATAC", "papers": [{"label": "Abedini et al., J Clin Invest 2024", "url": "https://doi.org/10.1172/JCI157165"}]}, {"title": "RAAS Inhibition in Diabetic Kidney Disease Atlas (ZSF1)", "category": "Rat models", "tags": ["Rat", "Diabetes", "Drug response", "snRNA-seq"], "note": "Single-cell resolution effects of renin-angiotensin-aldosterone blockade.", "url": "https://data.susztaklab.com/ZSF1_RAASi", "papers": [{"label": "Balzer et al., J Am Soc Nephrol 2026", "url": "https://doi.org/10.1681/ASN.0000000995"}]}, {"title": "Rat Diabetic Kidney Disease snRNA-seq (ZSF1, UMAP)", "category": "Rat models", "tags": ["Rat", "Diabetes", "snRNA-seq", "UMAP"], "note": "Soluble guanylate cyclase activation in the ZSF1 rat.", "url": "https://data.susztaklab.com/ZSF1_sGC_snRNA/index.php", "papers": [{"label": "Balzer et al., Cell Reports Medicine 2023", "url": "https://www.sciencedirect.com/science/article/pii/S2666379123000988"}]}, {"title": "NIDDK Central Repository", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Cohorts", "Biosamples", "Controlled access"], "note": "The NIH repository for clinical data and biosamples from NIDDK-funded kidney studies; request access to CRIC, NEPTUNE, CureGN, AASK, MDRD and others in one place.", "url": "https://repository.niddk.nih.gov/home", "papers": []}, {"title": "CRIC, Chronic Renal Insufficiency Cohort", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Cohort", "CKD", "Controlled access"], "note": "Longitudinal cohort of about 5,500 adults with CKD: phenotypes, outcomes, genotypes, proteomics and metabolomics; the source of our blood methylation atlas.", "url": "https://repository.niddk.nih.gov/studies/cric/", "papers": []}, {"title": "NEPTUNE, Nephrotic Syndrome Study Network", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Cohort", "Glomerular disease", "Biopsy"], "note": "Biopsy-based cohort of nephrotic syndrome (FSGS, MCD, membranous) with transcriptomics, digital pathology and outcomes; companion eQTLs are at NephQTL.", "url": "https://repository.niddk.nih.gov/studies/neptune/", "papers": []}, {"title": "CureGN, Cure Glomerulonephropathy", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Cohort", "Glomerular disease", "Biopsy"], "note": "Prospective cohort of more than 2,400 children and adults with biopsy-proven IgA nephropathy, FSGS, MCD and membranous nephropathy.", "url": "https://repository.niddk.nih.gov/studies/curegn_prime/", "papers": []}, {"title": "Kidney Precision Medicine Project (KPMP)", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Consortium", "Biopsy", "Atlas"], "note": "NIDDK consortium c
59ollecting research biopsies from people with CKD and AKI; the Kidney Tissue Atlas below holds the molecular data.", "url": "https://www.kpmp.org/", "papers": []}, {"title": "(Re)Building a Kidney (RBK)", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Consortium", "Development", "Regeneration"], "note": "NIDDK consortium on kidney development, repair and regeneration, with organoid, imaging and single-cell data.", "url": "https://www.rebuildingakidney.org/", "papers": []}, {"title": "United States Renal Data System (USRDS)", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Epidemiology", "Registry"], "note": "National surveillance system for CKD and kidney failure in the United States: incidence, prevalence, treatment and cost, with an annual data report and researcher data requests.", "url": "https://usrds.org/", "papers": []}, {"title": "dkNET", "category": "External resource (not hosted here): NIH kidney cohorts and consortia", "tags": ["Directory"], "note": "NIDDK's information network that catalogues data repositories, tools and resources for kidney, urologic and metabolic research.", "url": "https://dknet.org/", "papers": []}, {"title": "CKDGen Consortium", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Summary statistics"], "note": "Meta-analysis summary statistics for eGFR, CKD, albuminuria, urate and related kidney traits from the CKDGen consortium.", "url": "https://ckdgen.imbi.uni-freiburg.de/datasets/", "papers": []}, {"title": "Million Veteran Program (MVP)", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Multi-ancestry"], "note": "Genome-wide PheWAS and GWAS results from the VA Million Veteran Program, including kidney function traits; summary statistics are released through dbGaP.", "url": "https://www.mvp.va.gov/pwa/discover-mvp-data", "papers": []}, {"title": "Knowledge Portal Network (Broad Institute)", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Portal"], "note": "The Broad Institute's family of knowledge portals (CMDKP and others) that integrate GWAS datasets, including CKDGen, UK Biobank and MVP kidney traits, with gene-level and variant-level views.", "url": "https://kp4cd.org/", "papers": []}, {"title": "Common Metabolic Diseases Knowledge Portal", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Portal"], "note": "Aggregated genetic association results for metabolic and kidney traits, with PheWAS, gene prioritization and fine-mapping tools.", "url": "https://cmdkp.org/", "papers": []}, {"title": "FinnGen", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Biobank"], "note": "GWAS results for thousands of disease endpoints, including kidney diseases, from the Finnish biobank study; browsable summary statistics for each release.", "url": "https://www.finngen.fi/en/access_results", "papers": []}, {"title": "GWAS Catalog (EMBL-EBI)", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Catalogue"], "note": "The curated catalogue of published genome-wide association studies and summary statistics.", "url": "https://www.ebi.ac.uk/gwas/", "papers": []}, {"title": "Open Targets Genetics", "category": "External resource (not hosted here): Human genetics and GWAS", "tags": ["GWAS", "Variant to gene"], "note": "Variant-to-gene mapping, colocalization and locus-to-gene scores across GWAS and molecular QTL studies.", "url": "https://genetics.opentargets.org/", "papers": []}, {"title": "GTEx Portal", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["eQTL", "Bulk RNA-seq"], "note": "Genotype-Tissue Expression project: bulk expression, eQTLs and sQTLs across human tissues, including kidney cortex.", "url": "https://gtexportal.org/", "papers": []}, {"title": "eQTLGen", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["eQTL", "Blood"], "note": "Blood cis- and trans-eQTLs from more than 30,000 individuals.", "url": "https://www.eqtlgen.org/", "papers": []}, {"title": "NephQTL", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["eQTL", "Kidney biopsy"], "note": "Glomerular and tubulointerstitial eQTLs from NEPTUNE kidney biopsies.", "url": "https://nephqtl.org/", "papers": []}, {"title": "UK Biobank Pharma Proteomics Project (UKB-PPP)", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["pQTL", "Plasma"], "note": "Plasma proteomic pQTL summary statistics for about 3,000 proteins measured in more than 50,000 UK Biobank participants.", "url": "https://registry.opendata.aws/ukbppp/", "papers": []}, {"title": "deCODE plasma proteomics", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["pQTL", "Plasma"], "note": "Plasma pQTL summary data for 4,907 aptamers in 35,559 Icelanders.", "url": "https://www.decode.com/summarydata/", "papers": []}, {"title": "Nephroseq", "category": "External resource (not hosted here): Expression, QTL and proteomics", "tags": ["Bulk RNA-seq", "Disease cohorts"], "note": "Curated kidney transcriptomic datasets with a query interface for gene expression across disease cohorts.", "url": "https://www.nephroseq.org/", "papers": []}, {"title": "KPMP Kidney Tissue Atlas", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Single-cell", "Spatial", "Human"], "note": "Kidney Precision Medicine Project: single-cell, single-nucleus, spatial and imaging data from biopsies of healthy and diseased human kidneys.", "url": "https://atlas.kpmp.org/", "papers": []}, {"title": "HuBMAP Data Portal", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Single-cell", "Spatial"], "note": "Human BioMolecular Atlas Program: multi-modal single-cell and spatial data, including kidney, with a common coordinate framework.", "url": "https://portal.hubmapconsortium.org/", "papers": []}, {"title": "CZ CELLxGENE Discover", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Single-cell", "Browser"], "note": "Standardized, browsable single-cell datasets, including many kidney studies, with gene expression and cell-type queries.", "url": "https://cellxgene.cziscience.com/", "papers": []}, {"title": "Human Cell Atlas", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Single-cell"], "note": "Data portal of the Human Cell Atlas consortium.", "url": "https://data.humancellatlas.org/", "papers": []}, {"title": "Kidney Interactive Transcriptomics (Humphreys lab)", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Single-cell", "Mouse", "Human"], "note": "Interactive single-cell and single-nucleus kidney datasets from mouse and human injury and disease models.", "url": "https://humphreyslab.com/SingleCell/", "papers": []}, {"title": "GUDMAP", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Development", "Imaging"], "note": "GenitoUrinary Development Molecular Anatomy Project: expression, imaging and single-cell data on kidney and urinary tract development.", "url": "https://www.gudmap.org/", "papers": []}, {"title": "ENCODE", "category": "External resource (not hosted here): Single-cell, spatial and epigenome atlases", "tags": ["Epigenome", "Chromatin"], "note": "Encyclopedia of DNA Elements: chromatin accessibility, histone marks and transcription factor binding across tissues and cell types, including kidney.", "url": "https://www.encodeproject.org/", "papers": []}, {"title": "GSE306009: ACLY-driven metabolic reprogramming promotes histone acetylation and inflammation-associated fibrosis in chronic kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2026"], "note": "6 samples, released 2026/07/15.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE306009", "papers": [{"label": "PubMed 41990244", "url": "https://pubmed.ncbi.nlm.nih.gov/41990244/"}]}, {"title": "GSE319933: Bulk RNA-seq profiling of primary mouse tubular epithelial cells following AdvCre-mediated ELF3 deletion under TNFα and IFNγ stimulation", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2026"], "note": "6 samples, released 2026/06/16.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319933", "papers": []}, {"title": "GSE319877: Transcriptomic profiling of human RPTECs following TNFα and IFNγ stimulation at early and late time points", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2026"], "note": "20 samples, released 2026/06/16.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319877", "papers": []}, {"title": "GSE319848: CUT&RUN profiling of ELF3 and NFKB2 binding landscapes in primary mouse tubular epithelial cells under TNFα and IFNγ stimulation", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2026"], "note": "2 samples, released 2026/06/16.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE319848", "papers": []}, {"title": "GSE278614: Single-Cell Spatial Mapping of Human Kidney Development Reveals Cellular Niches and Lineage Dynamics [CosMx]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "spatial / other", "2026"], "note": "3 samples, released 2026/04/22.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE278614", "papers": []}, {"title": "GSE297989: HNF1B integrates signals in a feed-forward loop driving kidney disease progression [RNAseq_UUOd1]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2026"], "note": "8 samples, released 2026/04/21.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297989", "papers": [{"label": "PubMed 41990178", "url": "https://pubmed.ncbi.nlm.nih.gov/41990178/"}]}, {"title": "GSE297988: HNF1B integrates signals in a feed-forward loop driving kidney disease progression [RNAseq_P60d2]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2026"], "note": "8 samples, released 2026/04/21.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297988", "papers": [{"label": "PubMed 41990178", "url": "https://pubmed.ncbi.nlm.nih.gov/41990178/"}]}, {"title": "GSE297987: HNF1B integrates signals in a feed-forward loop driving kidney disease progression [ChIPseq_Hnf1b]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2026"], "note": "5 samples, released 2026/04/21.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE297987", "papers": [{"label": "PubMed 41990178", "url": "https://pubmed.ncbi.nlm.nih.gov/41990178/"}]}, {"title": "GSE233078: Single-cell resolution drug effects on renin-angiotensin-aldosterone blockade in ZSF1 rat diabetic kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "RNA / single-cell RNA", "2026"], "note": "11 samples, released 2026/01/12.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE233078", "papers": [{"label": "PubMed 41563360", "url": "https://pubmed.ncbi.nlm.nih.gov/41563360/"}]}, {"title": "GSE283166: Cell-specific Inducible Human APOL1 Risk Variant Expression Cause Hypertension and Renal Damage", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2025"], "note": "6 samples, released 2025/12/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE283166", "papers": [{"label": "PubMed 41376591", "url": "https://pubmed.ncbi.nlm.nih.gov/41376591/"}]}, {"title": "GSE291551: Analysis of individual patient pathway coordination in a cross-species single-cell kidney atlas ", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human; mouse", "RNA / single-cell RNA", "2025"], "note": "11 samples, released 2025/06/23.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE291551", "papers": [{"label": "PubMed 40775269", "url": "https://pubmed.ncbi.nlm.nih.gov/40775269/"}]}, {"title": "GSE273027: Germline TET2 variants contribute to the pathogenesis of kidney disease through impaired DNA damage repair and the activation of cytosolic nucleotide sensors", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human; mouse", "RNA / single-cell RNA", "2024"], "note": "6 samples, released 2024/09/13.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE273027", "papers": []}, {"title": "GSE223777: Transcriptomic analysis of Pepck-Vpr mouse kidney", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2024"], "note": "4 samples, released 2024/06/12.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE223777", "papers": [{"label": "PubMed 39032602", "url": "https://pubmed.ncbi.nlm.nih.gov/39032602/"}]}, {"title": "GSE243871: Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human;
59 mouse", "RNA / single-cell RNA, chromatin (ATAC / ChIP / CUT&RUN)", "2024"], "note": "28 samples, released 2024/05/27.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243871", "papers": [{"label": "PubMed 39009564", "url": "https://pubmed.ncbi.nlm.nih.gov/39009564/"}]}, {"title": "GSE243870: Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney (scRNA-Seq)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2024"], "note": "3 samples, released 2024/05/27.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243870", "papers": [{"label": "PubMed 39009564", "url": "https://pubmed.ncbi.nlm.nih.gov/39009564/"}]}, {"title": "GSE243868: Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney (snATAC-Seq)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2024"], "note": "2 samples, released 2024/05/27.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243868", "papers": [{"label": "PubMed 39009564", "url": "https://pubmed.ncbi.nlm.nih.gov/39009564/"}]}, {"title": "GSE243867: Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney (RNA-Seq)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2024"], "note": "18 samples, released 2024/05/27.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243867", "papers": [{"label": "PubMed 39009564", "url": "https://pubmed.ncbi.nlm.nih.gov/39009564/"}]}, {"title": "GSE243866: Single-Cell multi-omics reveals disrupted gene regulatory landscape and cell differentiation by Wilms tumor-associated ENL mutation in the developing kidney (ChIP-Seq)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "chromatin (ATAC / ChIP / CUT&RUN)", "2024"], "note": "5 samples, released 2024/05/27.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE243866", "papers": [{"label": "PubMed 39009564", "url": "https://pubmed.ncbi.nlm.nih.gov/39009564/"}]}, {"title": "GSE211785: Spatially resolved human kidney multi-omics single cell atlas highlights the key role of fibrotic microenvironment in kidney disease progression.", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA, chromatin (ATAC / ChIP / CUT&RUN)", "2024"], "note": "80 samples, released 2024/01/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE211785", "papers": [{"label": "PubMed 38217002", "url": "https://pubmed.ncbi.nlm.nih.gov/38217002/"}, {"label": "PubMed 38514613", "url": "https://pubmed.ncbi.nlm.nih.gov/38514613/"}, {"label": "PubMed 39048792", "url": "https://pubmed.ncbi.nlm.nih.gov/39048792/"}, {"label": "PubMed 41376591", "url": "https://pubmed.ncbi.nlm.nih.gov/41376591/"}, {"label": "PubMed 40796935", "url": "https://pubmed.ncbi.nlm.nih.gov/40796935/"}]}, {"title": "GSE183842: Single cell transcriptomics and chromatin accessibility profiling elucidate the kidney protective mechanism of mineralocorticoid receptor antagonism", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "RNA / single-cell RNA, chromatin (ATAC / ChIP / CUT&RUN)", "2023"], "note": "47 samples, released 2023/11/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183842", "papers": [{"label": "PubMed 37906287", "url": "https://pubmed.ncbi.nlm.nih.gov/37906287/"}]}, {"title": "GSE183841: Single cell transcriptomics and chromatin accessibility profiling elucidate the kidney protective mechanism of mineralocorticoid receptor antagonism [bulk RNA-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "RNA / single-cell RNA", "2023"], "note": "16 samples, released 2023/11/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183841", "papers": [{"label": "PubMed 37906287", "url": "https://pubmed.ncbi.nlm.nih.gov/37906287/"}]}, {"title": "GSE183840: Single cell transcriptomics and chromatin accessibility profiling elucidate the kidney protective mechanism of mineralocorticoid receptor antagonism [snATAC-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "chromatin (ATAC / ChIP / CUT&RUN)", "2023"], "note": "9 samples, released 2023/11/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183840", "papers": [{"label": "PubMed 37906287", "url": "https://pubmed.ncbi.nlm.nih.gov/37906287/"}]}, {"title": "GSE183839: Single cell transcriptomics and chromatin accessibility profiling elucidate the kidney protective mechanism of mineralocorticoid receptor antagonism [snRNA-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "RNA / single-cell RNA", "2023"], "note": "22 samples, released 2023/11/17.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183839", "papers": [{"label": "PubMed 37906287", "url": "https://pubmed.ncbi.nlm.nih.gov/37906287/"}]}
59, {"title": "GSE242095: Endogenous renal adiponectin drives gluconeogenesis through enhancing pyruvate and fatty acid utilization", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2023"], "note": "6 samples, released 2023/09/20.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242095", "papers": [{"label": "PubMed 37848446", "url": "https://pubmed.ncbi.nlm.nih.gov/37848446/"}]}, {"title": "GSE220493: Unified Mouse and Human Kidney Single-Cell Expression Atlas Reveal Commonalities and Differences in Disease States", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2023"], "note": "6 samples, released 2023/09/15.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE220493", "papers": []}, {"title": "GSE209821: Treatment effects of soluble guanylate cyclase modulation on diabetic kidney disease at single-cell resolution", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "rat", "RNA / single-cell RNA", "2023"], "note": "12 samples, released 2023/02/24.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE209821", "papers": [{"label": "PubMed 37023747", "url": "https://pubmed.ncbi.nlm.nih.gov/37023747/"}]}, {"title": "GSE207587: The RNA-seq for the kidneys injected with cisplatin and NAD precursors.", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2023"], "note": "16 samples, released 2023/02/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE207587", "papers": [{"label": "PubMed 36914909", "url": "https://pubmed.ncbi.nlm.nih.gov/36914909/"}]}, {"title": "GSE212715: Tet2 and Tet3 mediated active cytosine hydroxymethylation in Six2 progenitor cells is critical for nephron progenitor differentiation and nephron endowment", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, DNA methylation", "2022"], "note": "4 samples, released 2022/11/23.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212715", "papers": []}, {"title": "GSE137570: Loss of FERM domain-containing protein 3 (FRMD3) is associated with severity of chronic kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2022"], "note": "41 samples, released 2022/10/24.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE137570", "papers": [{"label": "PubMed 36550108", "url": "https://pubmed.ncbi.nlm.nih.gov/36550108/"}]}, {"title": "GSE205217: Hepatocyte nuclear factor 1β gene regulation in E14.5 ureteric bud cells", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2022"], "note": "10 samples, released 2022/10/20.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205217", "papers": [{"label": "PubMed 36266461", "url": "https://pubmed.ncbi.nlm.nih.gov/36266461/"}]}, {"title": "GSE205189: Hepatocyte nuclear factor 1β binding in E14.5 kidney", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2022"], "note": "6 samples, released 2022/10/20.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE205189", "papers": [{"label": "PubMed 36266461", "url": "https://pubmed.ncbi.nlm.nih.gov/36266461/"}]}, {"title": "GSE200547: Epigenomic and transcriptomic analyses define core cell types, genes and targetable mechanisms for kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "chromatin (ATAC / ChIP / CUT&RUN)", "2022"], "note": "4 samples, released 2022/06/16.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE200547", "papers": [{"label": "PubMed 35710981", "url": "https://pubmed.ncbi.nlm.nih.gov/35710981/"}, {"label": "PubMed 38287030", "url": "https://pubmed.ncbi.nlm.nih.gov/38287030/"}]}, {"title": "GSE182256: Single cell analysis identifies the key role of basophils orchestrating Th17 immunity and kidney fibrosis", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2022"], "note": "8 samples, released 2022/03/07.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE182256", "papers": [{"label": "PubMed 35552540", "url": "https://pubmed.ncbi.nlm.nih.gov/35552540/"}]}, {"title": "GSE176465: Urine single cell RNA-sequencing in focal segmental glomerulosclerosis reveals inflammatory signatures in immune cells and podocytes", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2021"], "note": "23 samples, released 2021/12/07.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE176465", "papers": [{"label": "PubMed 35155868", "url": "https://pubmed.ncbi.nlm.nih.gov/35155868/"}, {"label": "PubMed 36644347", "url": "https://pubmed.ncbi.nlm.nih.gov/36644347/"}]}, {"title": "GSE181671: African American-specific APOL1  risk variants in endothelial cells exacerbate sepsis and COVID19 severity", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "2 samples, released 2021/08/12.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE181671", "papers": [{"label": "PubMed 41376591", "url": "https://pubmed.ncbi.nlm.nih.gov/41376591/"}]}, {"title": "GSE180420: Single-cell analysis highlights differences in druggable pathways underlying adaptive or fibrotic kidney regeneration", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "20 samples, released 2021/07/21.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE180420", "papers": [{"label": "PubMed 35821371", "url": "https://pubmed.ncbi.nlm.nih.gov/35821371/"}]}, {"title": "GSE173343: Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments [RNA-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2021"], "note": "68 samples, released 2021/05/20.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE173343", "papers": [{"label": "PubMed 34385711", "url": "https://pubmed.ncbi.nlm.nih.gov/34385711/"}, {"label": "PubMed 38287030", "url": "https://pubmed.ncbi.nlm.nih.gov/38287030/"}, {"label": "PubMed 39048792", "url": "https://pubmed.ncbi.nlm.nih.gov/39048792/"}
59]}, {"title": "GSE168676: Identification of dachshund-1 (DACH1) transcriptional target genes in podocytes at baseline and in experimental diabetes", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "12 samples, released 2021/05/19.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE168676", "papers": [{"label": "PubMed 33998601", "url": "https://pubmed.ncbi.nlm.nih.gov/33998601/"}]}, {"title": "GSE172008: Mapping the genetic architecture of human traits to cell types in the kidney identifies mechanisms of disease and potential treatments", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "chromatin (ATAC / ChIP / CUT&RUN)", "2021"], "note": "2 samples, released 2021/05/10.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE172008", "papers": [{"label": "PubMed 34385711", "url": "https://pubmed.ncbi.nlm.nih.gov/34385711/"}, {"label": "PubMed 34426578", "url": "https://pubmed.ncbi.nlm.nih.gov/34426578/"}, {"label": "PubMed 38287030", "url": "https://pubmed.ncbi.nlm.nih.gov/38287030/"}, {"label": "PubMed 38287344", "url": "https://pubmed.ncbi.nlm.nih.gov/38287344/"}]}, {"title": "GSE166355: Defining the lineage of thermogenic perivascular adipose tissue [Thoracic PVAT]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human; mouse", "RNA / single-cell RNA", "2021"], "note": "6 samples, released 2021/04/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE166355", "papers": [{"label": "PubMed 33846639", "url": "https://pubmed.ncbi.nlm.nih.gov/33846639/"}]}, {"title": "GSE164528: Defining the lineage of thermogenic perivascular adipose tissue", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human; mouse", "RNA / single-cell RNA", "2021"], "note": "42 samples, released 2021/04/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164528", "papers": [{"label": "PubMed 33846639", "url": "https://pubmed.ncbi.nlm.nih.gov/33846639/"}]}, {"title": "GSE164527: Defining the lineage of thermogenic perivascular adipose tissue [PVAT v IWAT]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "12 samples, released 2021/04/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164527", "papers": [{"label": "PubMed 33846639", "url": "https://pubmed.ncbi.nlm.nih.gov/33846639/"}]}, {"title": "GSE164526: Defining the lineage of thermogenic perivascular adipose tissue [Pup Aorta]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "12 samples, released 2021/04/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164526", "papers": [{"label": "PubMed 33846639", "url": "https://pubmed.ncbi.nlm.nih.gov/33846639/"}]}, {"title": "GSE164525: Defining the lineage of thermogenic perivascular adipose tissue [Adult Aorta]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2021"], "note": "12 samples, released 2021/04/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE164525", "papers": [{"label": "PubMed 33846639", "url": "https://pubmed.ncbi.nlm.nih.gov/33846639/"}]}, {"title": "GSE157640: Urinary single cell profiling captures cellular diversity of the kidney", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2021"], "note": "18 samples, released 2021/02/02.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157640", "papers": [{"label": "PubMed 33531352", "url": "https://pubmed.ncbi.nlm.nih.gov/33531352/"}]}, {"title": "GSE156686: Renal proximal tubule cell state and metabolism are coupled by nuclear receptors", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2020"], "note": "8 samples, released 2020/12/09.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE156686", "papers": [{"label": "PubMed 33301
59705", "url": "https://pubmed.ncbi.nlm.nih.gov/33301705/"}]}, {"title": "GSE152765: Metabolic programming drives proximal tubule differentiation and kidney dysfunction", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2020"], "note": "1 samples, released 2020/11/30.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE152765", "papers": [{"label": "PubMed 33301705", "url": "https://pubmed.ncbi.nlm.nih.gov/33301705/"}]}, {"title": "GSE157079: Single cell resolution regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, chromatin (ATAC / ChIP / CUT&RUN)", "2020"], "note": "13 samples, released 2020/08/29.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE157079", "papers": [{"label": "PubMed 33859189", "url": "https://pubmed.ncbi.nlm.nih.gov/33859189/"}, {"label": "PubMed 34426578", "url": "https://pubmed.ncbi.nlm.nih.gov/34426578/"}]}, {"title": "GSE149638: ASEP: gene-based detection of allele-specific expression cross individuals in a population by RNA sequencing", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2020"], "note": "96 samples, released 2020/05/06.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE149638", "papers": [{"label": "PubMed 32392242", "url": "https://pubmed.ncbi.nlm.nih.gov/32392242/"}]}, {"title": "GSE145477: Single cell transcriptomics analysis of bone marrow mesenchymal lineage cells", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2020"], "note": "4 samples, released 2020/05/01.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145477", "papers": [{"label": "PubMed 32286228", "url": "https://pubmed.ncbi.nlm.nih.gov/32286228/"}, {"label": "PubMed 35393948", "url": "https://pubmed.ncbi.nlm.nih.gov/35393948/"}]}, {"title": "GSE146974: Deep learning enables accurate clustering with batch effect removal in single-cell RNA-seq analysis", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2020"], "note": "3 samples, released 2020/03/21.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE146974", "papers": [{"label": "PubMed 32393754", "url": "https://pubmed.ncbi.nlm.nih.gov/32393754/"}, {"label": "PubMed 34035047", "url": "https://pubmed.ncbi.nlm.nih.gov/34035047/"}]}, {"title": "GSE134267: Dnmt3a and Dnmt3b-mediated decommissioning of fetal enhancers linked to kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, DNA methylation", "2020"], "note": "19 samples, released 2020/03/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE134267", "papers": [{"label": "PubMed 32127410", "url": "https://pubmed.ncbi.nlm.nih.gov/32127410/"}]}, {"title": "GSE126823: Ascorbic acid–induced TET activation mitigates adverse hydroxymethylcystosine loss in renal cell carcinoma", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "DNA methylation", "2019"], "note": "12 samples, released 2019/04/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE126823", "papers": [{"label": "PubMed 30702441", "url": "https://pubmed.ncbi.nlm.nih.gov/30702441/"}]}, {"title": "GSE124610: Loss of hydroxymethylcytosine is an independent adverse prognostic factor in clear cell Renal Cell Carcinoma (ccRCC) and can be abrogated by ascorbic acid mediated TET activation", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "DNA methylation", "2019"], "note": "8 samples, released 2019/04/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE124610", "papers": [{"label": "PubMed 30702441", "url": "https://pubmed.ncbi.nlm.nih.gov/30702441/"}]}, {"title": "GSE110481: DNMT1 in Six2 progenitor cells is essential for transposable element silencing and kidney development", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, DNA methylation", "2019"], "note": "15 samples, released 2019/03/15.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110481", "papers": [{"label": "PubMed 30850438", "url": "https://pubmed.ncbi.nlm.nih.gov/30850438/"}]}, {"title": "GSE115098: Kidney compartment specific eQTL studies highlight causal genes and pathways for renal disease development", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2018"], "note": "20 samples, released 2018/11/16.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115098", "papers": [{"label": "PubMed 30275566", "url": "https://pubmed.ncbi.nlm.nih.gov/30275566/"}, {"label": "PubMed 31167971", "url": "https://pubmed.ncbi.nlm.nih.gov/31167971/"}, {"label": "PubMed 31451708", "url": "https://pubmed.ncbi.nlm.nih.gov/31451708/"}, {"label": "PubMed 34426578", "url": "https://pubmed.ncbi.nlm.nih.gov/34426578/"}, {"label": "PubMed 38287030", "url": "https://pubmed.ncbi.nlm.nih.gov/38287030/"}, {"label": "PubMed 39048792", "url": "https://pubmed.ncbi.nlm.nih.gov/39048792/"}
59]}, {"title": "GSE104907: ERRγ coordinates a transcriptional program of mitochondrial and renal reabsorptive functions implicated in kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, chromatin (ATAC / ChIP / CUT&RUN)", "2018"], "note": "9 samples, released 2018/04/25.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104907", "papers": [{"label": "PubMed 29735694", "url": "https://pubmed.ncbi.nlm.nih.gov/29735694/"}]}, {"title": "GSE104906: ERRγ coordinates a transcriptional program of mitochondrial and renal reabsorptive functions implicated in kidney disease [RNA-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2018"], "note": "15 samples, released 2018/04/25.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104906", "papers": [{"label": "PubMed 29735694", "url": "https://pubmed.ncbi.nlm.nih.gov/29735694/"}]}, {"title": "GSE104905: ERRγ coordinates a transcriptional program of mitochondrial and renal reabsorptive functions implicated in kidney disease [ChIP-seq]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "chromatin (ATAC / ChIP / CUT&RUN)", "2018"], "note": "9 samples, released 2018/04/25.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104905", "papers": [{"label": "PubMed 29735694", "url": "https://pubmed.ncbi.nlm.nih.gov/29735694/"}]}, {"title": "GSE107585: Comprehensive single cell RNAseq analysis of the kidney reveals novel cell types and unexpected cell plasticity", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2018"], "note": "7 samples, released 2018/04/05.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107585", "papers": [{"label": "PubMed 29622724", "url": "https://pubmed.ncbi.nlm.nih.gov/29622724/"}]}, {"title": "GSE108106: RNA sequence on the fed and fasted state of kidneys in mice", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2017"], "note": "9 samples, released 2017/12/15.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108106", "papers": [{"label": "PubMed 28404638", "url": "https://pubmed.ncbi.nlm.nih.gov/28404638/"}]}, {"title": "GSE77432: Alterations in the hepatic epigenome in mice exposed to a maternal high fat diet in utero", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA, DNA methylation", "2017"], "note": "8 samples, released 2017/10/02.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77432", "papers": [{"label": "PubMed 28911167", "url": "https://pubmed.ncbi.nlm.nih.gov/28911167/"}]}, {"title": "GSE77431: Alterations in the hepatic gene expression in mice exposed to a maternal high fat diet in utero [Microarray]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2017"], "note": "2 samples, released 2017/10/02.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77431", "papers": [{"label": "PubMed 28911167", "url": "https://pubmed.ncbi.nlm.nih.gov/28911167/"}]}, {"title": "GSE77430: Alterations in the hepatic epigenome in mice exposed to a maternal high fat diet in utero [HELP]", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "DNA methylation", "2017"], "note": "6 samples, released 2017/10/02.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE77430", "papers": [{"label": "PubMed 28911167", "url": "https://pubmed.ncbi.nlm.nih.gov/28911167/"}]}, {"title": "GSE81492: APOL1 variant expression in mouse podocytes cause kidney disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2017"], "note": "10 samples, released 2017/02/15.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE81492", "papers": [{"label": "PubMed 28218918", "url": "https://pubmed.ncbi.nlm.nih.gov/28218918/"}, {"label": "PubMed 41376591", "url": "https://pubmed.ncbi.nlm.nih.gov/41376591/"}]}, {"title": "GSE80384: Notch pathway is overexpressed and is a therapeutic target in clear cell renal cancer", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "mouse", "RNA / single-cell RNA", "2016"], "note": "6 samples, released 2016/04/19.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE80384", "papers": [{"label": "PubMed 27909050", "url": "https://pubmed.ncbi.nlm.nih.gov/27909050/"}]}, {"title": "GSE70544: Transcriptional Signatures of Hypoxic and Inflammatory Renal Epithelial Injury", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2015"], "note": "12 samples, released 2015/09/28.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70544", "papers": [{"label": "PubMed 26400545", "url": "https://pubmed.ncbi.nlm.nih.gov/26400545/"}]}, {"title": "GSE69815: Expression array of glucosamine-fed Drosophila heart/nephrocyte complexes", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "fly", "RNA / single-cell RNA", "2015"], "note": "6 samples, released 2015/06/12.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE69815", "papers": [{"label": "PubMed 26190114", "url": "https://pubmed.ncbi.nlm.nih.gov/26190114/"}]}, {"title": "GSE60119: Next Generation Sequencing Facilitates Quantitative Analysis of Normal Human Kidney Transcriptomes", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2014"], "note": "2 samples, released 2014/08/06.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60119", "papers": [{"label": "PubMed 25231882", "url": "https://pubmed.ncbi.nlm.nih.gov/25231882/"}]}, {"title": "GSE49420: Integrative analysis demonstrates widespread NOTCH pathway activation in patients with renal cancer and reveals aberrant DNA methylation that targets the regulatory regions of the kidney genome", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "DNA methylation", "2014"], "note": "26 samples, released 2014/07/31.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE49420", "papers": [{"label": "PubMed 24916699", "url": "https://pubmed.ncbi.nlm.nih.gov/24916699/"}]}, {"title": "GSE50874: Methylation Profiling of Human Kidney Tubules", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "DNA methylation", "2013"], "note": "85 samples, released 2013/09/14.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE50874", "papers": [{"label": "PubMed 24098934", "url": "https://pubmed.ncbi.nlm.nih.gov/24098934/"}, {"label": "PubMed 28556588", "url": "https://pubmed.ncbi.nlm.nih.gov/28556588/"}]}, {"title": "GSE49637: Histone tail modification profiles of human renal tubule epithelial cells", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "chromatin (ATAC / ChIP / CUT&RUN)", "2013"], "note": "7 samples, released 2013/08/09.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE49637", "papers": [{"label": "PubMed 24098934", "url": "https://pubmed.ncbi.nlm.nih.gov/24098934/"}, {"label": "PubMed 25007794", "url": "https://pubmed.ncbi.nlm.nih.gov/25007794/"}, {"label": "PubMed 28575649", "url": "https://pubmed.ncbi.nlm.nih.gov/28575649/"}]}, {"title": "GSE49557: Methylation profiles of Human kidney tubules", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "DNA methylation", "2013"], "note": "26 samples, released 2013/08/09.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE49557", "papers": [{"label": "PubMed 24098934", "url": "https://pubmed.ncbi.nlm.nih.gov/24098934/"}]}, {"title": "GSE48944: Gene expression profiles of human kidneys", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2013"], "note": "25 samples, released 2013/07/18.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE48944", "papers": [{"label": "PubMed 24098934", "url": "https://pubmed.ncbi.nlm.nih.gov/24098934/"}]}, {"title": "GSE30566: Transcriptome Analysis of Human Diabetic Kidney Disease (Control Glomeruli vs. Control Tubuli)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2011"], "note": "25 samples, released 2011/08/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30566", "papers": [{"label": "PubMed 21752957", "url": "https://pubmed.ncbi.nlm.nih.gov/21752957/"}]}, {"title": "GSE30529: Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Tubuli vs. Control Tubuli)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2011"], "note": "22 samples, released 2011/08/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30529", "papers": [{"label": "PubMed 21752957", "url": "https://pubmed.ncbi.nlm.nih.gov/21752957/"}]}, {"title": "GSE30528: Transcriptome Analysis of Human Diabetic Kidney Disease (DKD Glomeruli vs. Control Glomeruli)", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2011"], "note": "22 samples, released 2011/08/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30528", "papers": [{"label": "PubMed 21752957", "url": "https://pubmed.ncbi.nlm.nih.gov/21752957/"}]}, {"title": "GSE30122: Transcriptome Analysis of Human Diabetic Kidney Disease", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2011"], "note": "69 samples, released 2011/08/03.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE30122", "papers": [{"label": "PubMed 21752957", "url": "https://pubmed.ncbi.nlm.nih.gov/21752957/"}, {"label": "PubMed 26190114", "url": "https://pubmed.ncbi.nlm.nih.gov/26190114/"}]}, {"title": "GSE12682: Expression data from Human Kidney (HK) samples", "category": "Susztak lab deposit in GEO (raw reads and processed matrices)", "tags": ["GEO", "human", "RNA / single-cell RNA", "2010"], "note": "52 samples, released 2010/04/13.", "url": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE12682", "papers": [{"label": "PubMed 19277126", "url": "https://pubmed.ncbi.nlm.nih.gov/19277126/"}]}, {"title": "GSE12683: Expression data from Balb/c mice kidney s
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