1<!doctype html><html lang=en><head><meta charset=utf-8><meta name=viewport content="width=device-width,initial-scale=1"><meta name=robots content="index, follow"><link rel="icon shortcut" href=/favicon.ico sizes=32x32><link rel=icon href=/favicon.svg type=image/svg+xml><link rel=icon href=/favicon-dark.svg type=image/svg+xml media="(prefers-color-scheme: dark)"><link rel=icon href=/favicon-16x16.png type=image/png sizes=16x16><link rel=icon href=/favicon-32x32.png type=image/png sizes=32x32><link rel=apple-touch-icon href=/apple-touch-icon.png sizes=180x180><link fetchpriority=low href=/site.webmanifest rel=manifest><title>Is it Wow or Just about Time? â BioUno</title> 2<meta name=description content="Jenkins workflow visualization is a must have. But is it enough?"><link rel=canonical href=https://biouno.github.io/2016/06/07/is-it-wow-or-just-about-time.html itemprop=url><meta property="og:title" content="Is it Wow or Just about Time?"><meta property="og:description" content="Jenkins workflow visualization is a must have. But is it enough?"><meta property="og:type" content="article"><meta property="og:url" content="https://biouno.github.io/2016/06/07/is-it-wow-or-just-about-time.html"><meta property="article:section" content="blog"><meta property="article:published_time" content="2016-06-07T00:00:00+00:00"><meta property="article:modified_time" content="2016-06-07T00:00:00+00:00"><meta itemprop=name content="Is it Wow or Just about Time?"><meta itemprop=description content="Jenkins workflow visualization is a must have. But is it enough?"><meta itemprop=datePublished content="2016-06-07T00:00:00+00:00"><meta itemprop=dateModified content="2016-06-07T00:00:00+00:00"><meta itemprop=wordCount content="1260"><meta itemprop=keywords content="Jenkins,workflow,data-sciences,analysis,bioinformatics,reporting,"><meta name=twitter:card content="summary"><meta name=twitter:title content="Is it Wow or Just about Time?"><meta name=twitter:description content="Jenkins workflow visualization is a must have. But is it enough?"><link rel=preload href=/css/compiled/main.min.5a06ca26e024c4f511f45ee6c33a2a1faefaebe6be8a38d36e100f40a4c59c06.css as=style integrity="sha256-WgbKJuAkxPUR9F7mwzoqH6766+a+ijjTbhAPQKTFnAY="><link href=/css/compiled/main.min.5a06ca26e024c4f511f45ee6c33a2a1faefaebe6be8a38d36e100f40a4c59c06.css rel=stylesheet integrity="sha256-WgbKJuAkxPUR9F7mwzoqH6766+a+ijjTbhAPQKTFnAY="><link href=/css/custom.min.e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855.css rel=stylesheet integrity="sha256-47DEQpj8HBSa+/TImW+5JCeuQeRkm5NMpJWZG3hSuFU=">
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10contrast-more:border-current" type=search spellcheck=false> 11<kbd class="absolute my-1.5 select-none ltr:right-1.5 rtl:left-1.5 h-5 rounded bg-white px-1.5 font-mono text-[10px] font-medium text-gray-500 border dark:border-gray-100/20 dark:bg-dark/50 contrast-more:border-current contrast-more:text-current contrast-more:dark:border-current items-center gap-1 transition-opacity pointer-events-none hidden sm:flex">CTRL K</kbd></div><div><ul class="search-results hextra-scrollbar hidden border border-gray-200 bg-white text-gray-100 dark:border-neutral-800 dark:bg-neutral-900 absolute top-full z-20 mt-2 overflow-auto overscroll-contain rounded-xl py-2.5 shadow-xl max-h-[min(calc(50vh-11rem-env(safe-area-inset-bottom)),400px)] md:max-h-[min(calc(100vh-5rem-env(safe-area-inset-bottom)),400px)] inset-x-0 ltr:md:left-auto rtl:md:right-auto contrast-more:border contrast-more:border-gray-900 contrast-more:dark:border-gray-50 w-screen min-h-[100px] max-w-[min(calc(100vw-2rem),calc(100%+20rem))]" style="transition:max-height .2s ease 0s"></ul></div></div></div><div class="hextra-scrollbar overflow-y-auto overflow-x-hidden p-4 grow md:h-[calc(100vh-var(--navbar-height)-var(--menu-height))]"><ul class="flex flex-col gap-1 md:hidden"><li><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 12text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/projects.html>Projects 13<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 14text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/projects/jenkins-plugins.html>Jenkins Plug-ins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 15text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/projects/jenkins-update-site.html>Jenkins Update Site</a></li></ul></div></li><li><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 16text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/documentation.html>Documentation 17<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'>
17<li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 18text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/documentation/configuring-job-notification.html>Configuring Job notification</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 19text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/documentation/getting-started-with-jenkins.html>Getting Started with Jenkins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 20text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/documentation/installing-plugins.html>Installing Plug-ins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 21text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/documentation/scheduling-your-first-job.html>Scheduling your first job</a></li></ul></div></li><li><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 22text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials.html>Tutorials 23<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 24text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/active-choices-plugin/>Active Choices Plugin Tutorials 25<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'>
25<li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 26text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/active-choices-plugin/using-masked-passwords-with-the-active-choices-plugin.html>Using masked passwords with the Active Choices Plug-in</a></li></ul></div></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 27text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/image-gallery-plugin/>Image Gallery Plugin Tutorials 28<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 29text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/image-gallery-plugin/plotting-graphs-and-creating-image-galleries.html>Plotting graphs and creating image galleries</a></li></ul></div></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 30text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/misc/>Misc Tutorials 31<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 32text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border
32contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/misc/running-structure-in-parallel-using-jenkins-slaves.html>Running Structure in parallel using Jenkins slaves</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 33text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/misc/using-the-figshare-plugin.html>Using the figshare Plug-in</a></li></ul></div></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 34text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/r-plugin/>R Plugin Tutorials 35<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 36text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/r-plugin/tutorial01-jenkins-rscript.html>Tutorial 1 - Integrating Jenkins with R-script</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 37text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/tutorials/r-plugin/using-the-jenkins-r-plugin.html>Using the Jenkins R Plug-in</a></li></ul></div></li></ul></div></li><li class=open><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 38text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/blog/>Blog 39<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'>
39<li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 40text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2020/02/02/advanced-cross-project-linking-of-jenkins-artifacts.html>Advanced Cross-Project Linking of Jenkins Artifacts</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 41text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2018/01/29/using-job-dsl-plugin-with-active-choices-plugin.html>Using Job DSL Plugin with Active Choices Plugin</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 42text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/11/19/biouno-meeting-2016-11-18.html>BioUno meeting 2016-11-18</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 43text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/11/11/what-happens-when-you-make-a-java-member-variable-transient-in-a-jenkins-plug-in.html>What happens when you make a Java member variable transient in a Jenkins plug-in</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 44text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/10/22/jenkins-documenting-data-with-metadata.html>Jenkins: Documenting Data with Metadata</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 45text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/07/27/biouno-meeting-2016-07-27.html>BioUno meeting 2016-07-27</a></li><li class="flex flex-col open"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 46sidebar-active-item bg-primary-100 font-semibold text-primary-800 contrast-more:border
46contrast-more:border-primary-500 dark:bg-primary-400/10 dark:text-primary-600 contrast-more:dark:border-primary-500" href=/2016/06/07/is-it-wow-or-just-about-time.html>Is it Wow or Just about Time?</a><ul class='flex flex-col gap-1 relative before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] dark:before:bg-neutral-800 ltr:pl-3 ltr:before:left-0 rtl:pr-3 rtl:before:right-0 ltr:ml-3 rtl:mr-3'><li><a href=#look-ma-configuration-without-xml class="flex rounded px-2 py-1.5 text-sm transition-colors [word-break:break-word] cursor-pointer [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] contrast-more:border gap-2 before:opacity-25 before:content-['#'] text-gray-500 hover:bg-gray-100 hover:text-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:text-gray-900 contrast-more:dark:text-gray-50 contrast-more:border-transparent contrast-more:hover:border-gray-900 contrast-more:dark:hover:border-gray-50">Look Ma! Configuration without XML!</a></li><li><a href=#build-pipeline-visualization class="flex rounded px-2 py-1.5 text-sm transition-colors [word-break:break-word] cursor-pointer [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] contrast-more:border gap-2 before:opacity-25 before:content-['#'] text-gray-500 hover:bg-gray-100 hover:text-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:text-gray-900 contrast-more:dark:text-gray-50 contrast-more:border-transparent contrast-more:hover:border-gray-900 contrast-more:dark:hover:border-gray-50">Build Pipeline Visualization</a></li><li><a href=#visualizing-scripted-workflows class="flex rounded px-2 py-1.5 text-sm transition-colors [word-break:break-word] cursor-pointer [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] contrast-more:border gap-2 before:opacity-25 before:content-['#'] text-gray-500 hover:bg-gray-100 hover:text-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:text-gray-900 contrast-more:dark:text-gray-50 contrast-more:border-transparent contrast-more:hover:border-gray-900 contrast-more:dark:hover:border-gray-50">Visualizing Scripted Workflows</a></li><li><a href=#standing-on-my-soap-box class="flex rounded px-2 py-1.5 text-sm transition-colors [word-break:break-word] cursor-pointer [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] contrast-more:border gap-2 before:opacity-25 before:content-['#'] text-gray-500 hover:bg-gray-100 hover:text-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:text-gray-900 contrast-more:dark:text-gray-50 contrast-more:border-transparent contrast-more:hover:border-gray-900 contrast-more:dark:hover:border-gray-50">Standing on my Soap Box</a></li></ul></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 47text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/05/14/meeting-the-creator-of-my-favorite-automation-server.html>Meeting the creator of my favorite automation server</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 48text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2016/03/07/creating-a-jenkins-data-science-platform.html>Creating a Jenkins Data Science Platform</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 49text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border
49contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2015/09/21/changing-the-type-of-an-attribute-serialized-by-xstream-in-jenkins-plug-ins.html>Changing the type of an attribute serialized by XStream in Jenkins Plug-ins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 50text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2015/09/05/using-jenkins-credentials-plug-in-to-create-the-biouno-figshare-plug-in.html>Using Jenkins Credentials Plug-in to create the BioUno figshare Plug-in</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 51text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2015/05/15/from-uno-choice-to-active-choices.html>From Uno-Choice to Active Choices</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 52text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/07/08/java-drmaa-api-part-2.html>Java DRMAA API â part 2</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 53text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/07/07/consistent-reports-for-data-analysis.html>Consistent Reports for Data Analysis</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 54text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/06/21/experiences-from-juc-2014-boston.html>Experiences from JUC 2014 Boston</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 55text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/06/21/java-drmaa-api-part-1.html>Java DRMAA API â part 1</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 56text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border
56contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/05/30/playing-with-biojs.html>Playing with BioJS</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 57text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/04/28/ropensci-in-jenkins.html>rOpenSci in Jenkins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 58text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/04/14/usp-2nd-high-performance-computing-workshop-and-bioinformatics-pipelines.html>USP 2nd High Performance Computing Workshop and Bioinformatics pipelines</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 59text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/04/06/dnadigest-hackday-and-metadata.html>DNADigest Hackday and Metadata</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 60text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/03/20/uno-choice-our-first-user-contributed-plug-in.html>Uno-Choice: Our first user contributed plug-in</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 61text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/03/19/more-plug-ins-released.html>More plug-ins released</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 62text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/03/08/announcing-the-biouno-update-center-for-jenkins-plug-ins.html>Announcing the BioUno Update Center for Jenkins plug-ins</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 63text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border
63contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/2014/03/03/the-biouno-blog-is-live.html>The BioUno blog is live</a></li></ul></div></li><li><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 64text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information.html>Project Information 65<span class=hextra-sidebar-collapsible-button><svg fill="none" viewBox="0 0 24 24" stroke="currentcolor" class="h-[18px] min-w-[18px] rounded-sm p-0.5 hover:bg-gray-800/5 dark:hover:bg-gray-100/5"><path stroke-linecap="round" stroke-linejoin="round" stroke-width="2" d="M9 5l7 7-7 7" class="origin-center transition-transform rtl:-rotate-180"/></svg></span></a><div class="ltr:pr-0 overflow-hidden"><ul class='relative flex flex-col gap-1 before:absolute before:inset-y-1 before:w-px before:bg-gray-200 before:content-[""] ltr:ml-3 ltr:pl-3 ltr:before:left-0 rtl:mr-3 rtl:pr-3 rtl:before:right-0 dark:before:bg-neutral-800'><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 66text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/about.html>About</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 67text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/contact.html>Contact</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 68text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/license.html>License</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 69text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/publications.html>Publications</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 70text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border
70contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/roadmap.html>Roadmap</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 71text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/sponsors.html>Sponsors</a></li><li class="flex flex-col"><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 72text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/project_information/team.html>Team</a></li></ul></div></li><li><a class="flex items-center justify-between gap-2 cursor-pointer rounded px-2 py-1.5 text-sm transition-colors [-webkit-tap-highlight-color:transparent] [-webkit-touch-callout:none] [word-break:break-word] 73text-gray-500 hover:bg-gray-100 hover:text-gray-900 contrast-more:border contrast-more:border-transparent contrast-more:text-gray-900 contrast-more:hover:border-gray-900 dark:text-neutral-400 dark:hover:bg-primary-100/5 dark:hover:text-gray-50 contrast-more:dark:text-gray-50 contrast-more:dark:hover:border-gray-50" href=/about.html>About</a></li></ul><div class="max-xl:hidden h-0 w-64 shrink-0"></div></div><div class="md:hidden sticky bottom-0 bg-white dark:bg-dark mx-4 py-4 shadow-[0_-12px_16px_#fff] flex items-center gap-2 dark:border-neutral-800 dark:shadow-[0_-12px_16px_#111] contrast-more:border-neutral-400 contrast-more:shadow-none contrast-more:dark:shadow-none border-t" data-toggle-animation=show><div class="flex grow flex-col"><button title="Change theme" data-theme=light class="theme-toggle group h-7 rounded-md px-2 text-left text-xs font-medium text-gray-600 transition-colors dark:text-gray-400 hover:bg-gray-100 hover:text-gray-900 dark:hover:bg-primary-100/5 dark:hover:text-gray-50" type=button aria-label="Change theme"><div class="flex items-center gap-2 capitalize"><svg height="12" class="group-data-[theme=light]:hidden" xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="2" stroke="currentcolor" aria-hidden="true"><path stroke-linecap="round" stroke-linejoin="round" d="M12 3v1m0 16v1m9-9h-1M4 12H3m15.364 6.364-.707-.707M6.343 6.343l-.707-.707m12.728.0-.707.707M6.343 17.657l-.707.707M16 12a4 4 0 11-8 0 4 4 0 018 0z"/></svg><span class="group-data-[theme=light]:hidden">Light</span><svg height="12" class="group-data-[theme=dark]:hidden" xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="2" stroke="currentcolor" aria-hidden="true"><path stroke-linecap="round" stroke-linejoin="round" d="M20.354 15.354A9 9 0 018.646 3.646 9.003 9.003.0 0012 21a9.003 9.003.0 008.354-5.646z"/></svg><span class="group-data-[theme=dark]:hidden">Dark</span></div></button></div></div></aside><nav class="hextra-toc order-last hidden w-64 shrink-0 xl:block print:hidden px-4" aria-label="table of contents"><div class="hextra-scrollbar sticky top-16 overflow-y-auto pr-4 pt-6 text-sm [hyphens:auto] max-h-[calc(100vh-var(--navbar-height)-env(safe-area-inset-bottom))] ltr:-mr-4 rtl:-ml-4"><p class="mb-4 font-semibold tracking-tight">On this page</p><ul><li class="my-2 scroll-my-6 scroll-py-6"><a class="font-semibold inline-block text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-300 contrast-more:text-gray-900 contrast-more:underline contrast-more:dark:text-gray-50 w-full break-words" href=#look-ma-configuration-without-xml>Look Ma! Configuration without XML!</a></li><li class="my-2 scroll-my-6 scroll-py-6"><a class="font-semibold inline-block text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-300 contrast-more:text-gray-900 contrast-more:underline contrast-more:dark:text-gray-50 w-full break-words" href=#build-pipeline-visualization>Build Pipeline Visualization</a></li><li class="my-2 scroll-my-6 scroll-py-6"><a class="font-semibold inline-block text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-300 contrast-more:text-gray-900 contrast-more:underline contrast-more:dark:text-gray-50 w-full break-words" href=#visualizing-scripted-workflows>Visualizing Scripted Workflows</a></li><li class="my-2 scroll-my-6 scroll-py-6"><a class="font-semibold inline-block text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-300 contrast-more:text-gray-900 contrast-more:underline contrast-more:dark:text-gray-50 w-full break-words" href=#standing-on-my-soap-box>Standing on my Soap Box</a></li></ul><div class="mt-8 border-t bg-white pt-8 shadow-[0_-12px_16px_white] dark:bg-dark dark:shadow-[0_-12px_16px_#111] sticky bottom-0 flex flex-col items-start gap-2 pb-8 dark:border-neutral-800 contrast-more:border-t contrast-more:border-neutral-400 contrast-more:shadow-none contrast-more:dark:border-neutral-400"><a class="text-xs font-medium text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-100 contrast-more:text-gray-800 contrast-more:dark:text-gray-50" href=https://github.com/biouno/biouno.github.io/blob/master/content/blog/2016-06-07-Jenkins-Wow-or-JustAbout-Time.md target=_blank rel=noreferer>Edit this page on GitHub â</a> 74<button aria-hidden=true id=backToTop onclick=scrollUp() class="transition-all transition duration-75 opacity-0 text-xs font-medium text-gray-500 hover:text-gray-900 dark:text-gray-400 dark:hover:text-gray-100 contrast-more:text-gray-800 contrast-more:dark:text-gray-50"> 75<span>Scroll to top</span><svg xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="1.5" stroke="currentcolor" class="inline ml-1 h-3.5 w-3.5 border rounded-full border-gray-500 hover:border-gray-900 dark:border-gray-400 dark:hover:border-gray-100 contrast-more:border-gray-800 contrast-more:dark:border-gray-50"><path stroke-linecap="round" stroke-linejoin="round" d="M4.5 15.75l7.5-7.5 7.5 7.5"/></svg></button></div></div></nav><article class="w-full break-words flex min-h-[calc(100vh-var(--navbar-height))] min-w-0 justify-center pb-8 pr-[calc(env(safe-area-inset-right)-1.5rem)]"><main class="w-full min-w-0 max-w-6xl px-6 pt-4 md:px-12"><br class="mt-1.5 text-sm"><h1 class="text-center mt-2 text-4xl font-bold tracking-tight text-slate-900 dark:text-slate-100">
75Is it Wow or Just about Time?</h1><div class=mb-16></div><div class=content><p>We all know and love Jenkins despite some of its historical quirks. The community is now on a march to introduce some new concepts and a more modern UI that includes support for visualizing build pipelines. I’m very happy with this project direction! Since 2012 I have been waiting anxiously to see some graphical support for workflow configuration and review in Jenkins. Similar features are standard in other workflow tools, but did not seem to find their way into the Jenkins core. Now every tweet seems to be a ‘Wow!’ for the new UI improvements of Jenkins. In this exciting moment do we really think that Jenkins has caught-up with the graphical workflow world?</p><p>I started using Jenkins-CI almost 5 years ago and I was ecstatic with the functionality I could get out of this little gem of a workflow engine for life-science data management and analysis. Soon I had it crank through thousands of images generated in our lab from High Content Image analysis, generating useful numerical data. Most recently, coupled with the power of the R statistical language much of these numerical data can be processed into a variety of statistical graphs and plots and biologically relevant information for the discovery of new medicines. It was not the first time I had hijacked a build system for life/data-sciences service. In the past, I had build biological data management workflows based on ‘Ant’, ‘CruiseControl’ and ‘Gradle’ and I was just happy to find a new build system that provided a way to easily enter build parameters (free style project) to support the needs of life science data flows.</p><h2>Look Ma! Configuration without XML!<span class="absolute -mt-20" id=look-ma-configuration-without-xml></span> 76<a href=#look-ma-configuration-without-xml class=subheading-anchor aria-label="Permalink for this section"></a></h2><p>Well…not exactly! But still great! Having build workflows with Ant, I was already traumatized from writing and editing XML build files by hand. Jenkins build configuration is still stored as XML, but it’s edited through the Jenkins configuration page. The job configuration page is now a major focus of the Jenkins 2.x UI improvements. The form has transitioned from one long unwieldy configuration page to one (still long) form but with improved navigation to various project sections by using a set of easily accessible tab hyperlinks. The new project configuration page is certainly an improvement for initially configuring a project. However, what still remains a challenge is the lack of any significant tools (graphical or otherwise) to review the project configuration in the future. The only way to do this is to return to the configuration page and access each of the job sections to review settings and actions. There is no easy way to visually inspect the project steps, actions and parameter configuration. Not even a simple tabular summary that I’m aware off. What about the various project dependencies in terms of plugins, groovy scriptlets and external executables? In my experience (and opinion) the limited options for graphically reviewing Jenkins jobs and drilling down to their components and parameters (a common practice in workflow systems) is a major headache especially if you are maintaining multiple jobs and several job versions.</p><h2>Build Pipeline Visualization<span class="absolute -mt-20" id=build-pipeline-visualization></span> 77<a href=#build-pipeline-visualization class=subheading-anchor aria-label="Permalink for this section"></a></h2><p>Visualization of build pipelines (job instances) seem to have received more attention. Several Jenkins plugins exist that provide graphical visualization of in progress and build pipelines from build history. One of my favorites (and with over 18K installations apparently a favorite of many others) is the <a href=https://wiki.jenkins.io/display/JENKINS/Build+Pipeline+Plugin target=_blank rel=noopener>Build Pipeline Plugin</a>
77. The Build Pipeline plugin provides a Build Pipeline View of upstream and downstream connected jobs that typically form a build pipeline.</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/bpp1.png alt=bpp1.png align=center width=600px><p>Figure 1: Build Pipeline visualization using the Build Pipeline plugin</p><p>The <a href=https://wiki.jenkins.io/display/JENKINS/Delivery+Pipeline+Plugin target=_blank rel=noopener>Delivery Pipeline Plugin</a> provides a similar visual representation but jobs can be further grouped to form stages.</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/delivery_pipeline.png alt=delivery_pipeline.png align=center width=600px><p>Figure 2: Visualization of a pipeline with several stages using the Delivery Pipeline Plugin</p><p>In both the Build Pipeline and Delivery Pipeline visual representations, the individual project details displayed are rather limited. The Build Pipeline Plugin allows listing the parameters of the first job but no other job details are available. Importantly, the visualization capabilities of this plugin are available only after a specialized ‘Build Pipeline View’ is added. This makes it impractical for visualizing large numbers of jobs and jobs that are not linked into pipelines. It’s clear that the main focus of these plugins is the visualizations of the status (success/failure ) of the pipeline as a whole and not the review of the parameters/actions/steps of a job. A good introduction to pipeline orchestration and visualization can be found in the <a href=https://www.infoq.com/articles/orch-pipelines-jenkins target=_blank rel=noopener>Orchestrating your Delivery Pipelines with Jenkins</a> blog post.</p><h2>Visualizing Scripted Workflows<span class="absolute -mt-20" id=visualizing-scripted-workflows></span> 78<a href=#visualizing-scripted-workflows class=subheading-anchor aria-label="Permalink for this section"></a></h2><p>One of the problems encountered with chained job pipelines is the fact that the entire pipeline is not captured in a single place (file) but it is distributed in the individual contributing job configurations. In addition, although the concept of a ‘downstream build’ is well established and captured as such in the build log, an ‘upstream build’ is not recorded in the build log. Both of these issues contribute to challenges when the pipeline and its versions need to be documented and maintained. As a result, the Jenkins community and CloudBees (the company providing commercial support for Jenkins) have come with the concept of scripted pipelines a.k.a <a href=https://jenkins.io/solutions/pipeline/ target=_blank rel=noopener>pipeline as code</a>. Now the entire pipeline can be scripted using Groovy based DSL and the <a href=https://wiki.jenkins.io/display/JENKINS/Job+DSL+Plugin target=_blank rel=noopener>Job-DSL plugin</a>, or the <a href=https://wiki.jenkins.io/display/JENKINS/Pipeline+Plugin target=_blank rel=noopener>Pipeline plugin</a>. These plugins do solve their intended issue, but they now further complicate job comprehension as multiple job configurations are captured in a single script. Unfortunately, these plugins do not offer any additional graphical tools for the detailed comprehension of a pipeline project’s structure. Similarly to the Build Pipeline plugin, they provide graphical views of a running pipeline and build history but no visibility into the detail configuration of each job.</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/StageView_pac.png alt=StageView_pac.png align=center width=600px><p>Figure 3: Visualization for a scripted Pipeline</p><h2>Standing on my Soap Box<span class="absolute -mt-20" id=standing-on-my-soap-box></span> 79<a href=#standing-on-my-soap-box class=subheading-anchor aria-label="Permalink for this section"></a></h2><p>The observations I just described make me a little more pragmatic and reserved for the new Blue Ocean UI of Jenkins introduced this past week. Twitter was on fire with comments and kudos for the project! Obviously, the perceived functionality/usability of a software is largely attributed to a modern and responsive user interface. A couple tweets that made me smile said ‘Wow, the new Jenkins UI finally looks usable!’ and another ‘Oh wow, a Jenkins UI that not only doesn’t suck but actually looks <em>really</em> awesome.’</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/BlueOcean.png alt=BlueOcean.png align=center width=600px><p>Figure 4: The new Blue Ocean Jenkins scripted pipeline view</p><p>I’m looking forward to testing the new <a href=https://jenkins.io/blog/2016/05/26/introducing-blue-ocean/ target=_blank rel=noopener>Blue Ocean plugin</a>
79 to see if it improves on the job comprehension issues that I have described in this post. But somehow, I think that it will just provide a more visually pleasing backdrop for the existing graphical visualizations. In promoting Jenkins for life and data science duty, I’m obliged to compare it with existing tools in the field such as <a href=https://www.knime.org/ target=_blank rel=noopener>Knime</a> the <a href=https://galaxyproject.org/ target=_blank rel=noopener>Galaxy Project </a>and the commercial <a href=http://accelrys.com/products/collaborative-science/biovia-pipeline-pilot/ target=_blank rel=noopener>Pipeline Pilot</a> tool.</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/biovia_pipeline_pilot.jpg alt=biovia_pipeline_pilot.jpg align=center width=600px><p>Figure 5: The Pipeline Pilot Workflow Editor</p><img src=/posts/2016-06-07-Jenkins-Wow-or-JustAbout-Time/WorkflowEditing_Knime_Galaxy.jpg alt=WorkflowEditing_Knime_Galaxy.jpg align=center width=600px><p>Figure 6: Workflow editor in Knime and Galaxy</p><p>All of these tools provide interactive configuration and exploration of scientific workflows with well organized libraries of components that can be used to construct and enhance the data pipelines. I think that Jenkins would benefit from a similar approach to the exploration and construction of jobs and job pipelines. In the mean time, I welcome the Blue Ocean Jenkins project and hope that it will truly form the basis of a more interactive, modern and comprehensive framework for building future life and data science applications.</p><ol><li><a href=https://www.infoq.com/articles/orch-pipelines-jenkins target=_blank rel=noopener>Orchestrating your Delivery Pipelines with Jenkins</a></li><li><a href=https://groups.google.com/forum/#!topic/job-dsl-plugin/lpWYkE1ILao target=_blank rel=noopener>What’s the future of the Job-DSL plugin RE: Jenkins 2.0</a></li><li><a href=https://jenkins.io/blog/2016/05/26/introducing-blue-ocean/ target=_blank rel=noopener>Introducing Blue Ocean: a new user experience for Jenkins</a></li></ol></div><div class=mt-16></div></main></article></div><footer class="hextra-footer bg-gray-100 pb-[env(safe-area-inset-bottom)] dark:bg-neutral-900 print:bg-transparent"><div class="mx-auto flex gap-2 py-2 px-4 max-w-screen-xl"><button title="Change theme" data-theme=light class="theme-toggle group h-7 rounded-md px-2 text-left text-xs font-medium text-gray-600 transition-colors dark:text-gray-400 hover:bg-gray-100 hover:text-gray-900 dark:hover:bg-primary-100/5 dark:hover:text-gray-50" type=button aria-label="Change theme"><div class="flex items-center gap-2 capitalize"><svg height="12" class="group-data-[theme=light]:hidden" xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="2" stroke="currentcolor" aria-hidden="true"><path stroke-linecap="round" stroke-linejoin="round" d="M12 3v1m0 16v1m9-9h-1M4 12H3m15.364 6.364-.707-.707M6.343 6.343l-.707-.707m12.728.0-.707.707M6.343 17.657l-.707.707M16 12a4 4 0 11-8 0 4 4 0 018 0z"/></svg><span class="group-data-[theme=light]:hidden">Light</span><svg height="12" class="group-data-[theme=dark]:hidden" xmlns="http://www.w3.org/2000/svg" fill="none" viewBox="0 0 24 24" stroke-width="2" stroke="currentcolor" aria-hidden="true"><path stroke-linecap="round" stroke-linejoin="round" d="M20.354 15.354A9 9 0 018.646 3.646 9.003 9.003.0 0012 21a9.003 9.003.0 008.354-5.646z"/></svg><span class="group-data-[theme=dark]:hidden">Dark</span></div></button></div><hr class=dark:border-neutral-800><div class="max-w-screen-xl mx-auto flex justify-center py-12 pl-[max(env(safe-area-inset-left),1.5rem)] pr-[max(env(safe-area-inset-right),1.5rem)] text-gray-600 dark:text-gray-400 md:justify-start"><div class="flex w-full flex-col items-center sm:items-start"><div class="mt-6 text-xs">The BioUno Team</div></div></div></footer></body>
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