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191        <article id="markdown-content-container" class="container" style="width:90%"><h1 id="collaborations">Collaborations</h1>
192<p>
192The GO Consortium collaborates with many other groups on a wide variety of topics, particularly with groups whose expertise in specific areas of biology, or a complementary ontology project, would help to improve the usefulness of the GO knowledgebase. We welcome your feedback and contributions. Please <a href="https://help.geneontology.org/" target="blank">let us know</a> if you are interested in a possible collaboration.</p>
193
194<!-- 
195| Project | Description |
196|---------|-------------|
197| [SynGO](https://www.syngoportal.org/){:target="blank"} | Capturing synaptic processes and cellular components<br>[Stanley Center for Psychiatric Research at the Broad Institute](https://www.broadinstitute.org/stanley){:target="blank"} |
198| [Critical Assessment of Functional Annotation](https://biofunctionprediction.org/cafa/){:target="blank"} | An ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function |
199| [Gene Regulation Consortium (GRECO)](http://thegreco.org/){:target="blank"} | GRECO aspires to build a 'knowledge commons' for gene regulation research, coordinating groups who generate and collate knowledge on gene transcription regulation and building a common knowledge management framework |
200-->
201
202<h2 id="domain-specific-experts">Domain-specific experts</h2>
203
204<ul>
205  <li><strong>Extracellular Matrix</strong>: Alexandra Naba, Daiqing Chen, Matrisome</li>
206  <li><strong>Pathogens</strong>: Gene Godbold, Signature Science</li>
207  <li><strong>Transcription</strong>: Colin	Logie, Radboud University</li>
208  <li><em><strong>S. pombe</strong></em> <strong>annotations</strong>: Jacqueline	Hayles</li>
209</ul>
210
211<h2 id="ontologies-imported-by-the-go-consortium">Ontologies imported by the GO Consortium</h2>
212
213<p>The following ontologies are imported into GO:</p>
214
215<table>
216  <thead>
217    <tr>
218      <th><strong>Name</strong></th>
219      <th><strong>Description</strong></th>
220      <th><strong>Contact</strong></th>
221    </tr>
222  </thead>
223  <tbody>
224    <tr>
225      <td><a href="http://cellontology.org/" target="blank">Cell Type Ontology (CL)</a></td>
226      <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/27377652" target="blank">The Cell Ontology (CL) is an OBO Foundry ontology for the representation of cell types.</a></td>
227      <td><a href="https://github.com/obophenotype/cell-ontology/issues/new" target="blank">CL GitHub</a></td>
228    </tr>
229    <tr>
230      <td><a href="http://www.ebi.ac.uk/chebi/">Chemical Entities of Biological Interest (ChEBI)</a></td>
231      <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/23895341" target="blank">Chemical Entities of Biological Interest (ChEBI) is a freely available dictionary of molecular entities focused on ‘small’ chemical compounds.</a></td>
232      <td><a href="http://www.ebi.ac.uk/chebi/emailChebiForward.do" target="blank">ChEBI web submission form</a></td>
233    </tr>
234    <tr>
235      <td><a href="http://www.evidenceontology.org/" target="blank">Evidence Ontology (ECO)</a></td>
236      <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/30407590" target="blank">The Evidence Ontology (ECO) is an ontology for describing biological research evidence that is used to support assertions.</a></td>
237      <td><a href="https://github.com/evidenceontology/evidenceontology/issues/new" target="blank">ECO GitHub</a></td>
238    </tr>
239    <tr>
240      <td><a href="https://obofoundry.org/ontology/fao.html" target="blank">Fungal Anatomy Ontology (FAO)</a></td>
241      <td>A structured controlled vocabulary for the anatomy of fungi.</td>
242      <td>
242<a href="mailto:[email protected]" target="blank">FAO Help</a></td>
243    </tr>
244    <tr>
245      <td><a href="https://obofoundry.org/ontology/ncbitaxon.html" target="blank">NCBI Taxon Ontology</a></td>
246      <td>The NCBITaxon ontology is an automatic translation of the NCBI taxonomy database into obo/owl.</td>
247      <td><a href="https://github.com/obophenotype/ncbitaxon/issues" target="blank">NTO GitHub</a></td>
248    </tr>
249    <tr>
250      <td><a href="https://obofoundry.org/ontology/oba.html" target="blank">Ontology of Biological Attributes (OBA)</a></td>
251      <td>A collection of biological attributes (traits) covering all kingdoms of life.</td>
252      <td><a href="mailto:[email protected]" target="blank">OBA Help</a></td>
253    </tr>
254    <tr>
255      <td><a href="https://obofoundry.org/ontology/pato.html" target="blank">Phenotype and Trait Ontology (PATO)</a></td>
256      <td><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6169674/s" target="blank">An ontology of phenotypic qualities (properties, attributes or characteristics).</a></td>
257      <td><a href="mailto:[email protected]" target="blank">PATO Help</a></td>
258    </tr>
259    <tr>
260      <td><a href="http://planteome.org/" target="blank">Plant Ontology (PO)</a></td>
261      <td><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558174" target="blank">Plant Ontology project is a major international bioinformatics effort on standardizing the nomenclature, definitions, synonyms and relations of various terms/keywords/vocabularies that describe anatomical entities as well as the growth and developmental stages of plants.</a></td>
262      <td><a href="http://planteome.org/contact" target="blank">PO web submission form</a></td>
263    </tr>
264    <tr>
265      <td><a href="https://obofoundry.org/ontology/pr.html" target="blank">PRotein Ontology (PRO)</a></td>
266      <td>Development of ontological representation of protein-related entities and the relationships between them.</td>
267      <td><a href="https://purl.obolibrary.org/obo/pr/tracker" target="blank">PRO Help</a></td>
268    </tr>
269    <tr>
270      <td><a href="https://obofoundry.org/ontology/ro.html" target="blank">Relation Ontology (RO)</a></td>
271      <td><a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175958/" target="blank">RO is a collection of relations intended primarily for standardization across ontologies in the OBO Foundry and wider OBO library.</a></td>
272      <td><a href="mailto:[email protected]">RO help</a></td>
273    </tr>
274    <tr>
275      <td><a href="http://www.sequenceontology.org" target="blank">Sequence Ontology (SO)</a></td>
276      <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/15892872" target="blank">SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation.</a></td>
277      <td><a href="https://github.com/The-Sequence-Ontology/SO-Ontologies/issues" target="blank">SO GitHub</a></td>
278    </tr>
279    <tr>
280      <td><a href="https://uberon.github.io/" target="blank">Uber Anatomy Ontology (Uberon)</a></td>
281      <td><a href="https://www.ncbi.nlm.nih.gov/pubmed/25009735" target="blank">Uberon is an integrated cross-species ontology covering anatomical structures in animals.</a></td>
282      <td><a href="mailto:[email protected]">Uberon help</a></td>
283    </tr>
284  </tbody>
285</table>
286
287<h2 id="past-collaborations">Past collaborations</h2>
288<ul>
289  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/30501127">Alzheimer’s Disease</a></li>
290  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/29455577" target="blank">Autophagy</a></li>
291  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/26047810" target="blank">Autism</a></li>
292  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/27589964" target="blank">Biochemical pathways</a></li>
293  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/25346727" target="blank">Biofuel production</a></li>
294  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/29440116" target="blank">Cardiac conduction</a></li>
295  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/29177046" target="blank">Cilia</a></li>
296  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/24507166" target="blank">Development</a></li>
297  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/27076901" target="blank">Extracellular RNA and vesicles</a></li>
298  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/24941002" target="blank">Kidney development</a></li>
299  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/21119014" target="blank">Microbe-host interactions</a></li>
300  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/19178689" target="blank">Muscular system</a></li>
301  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/21419760,24627794,19046747" target="blank">Heart development</a></li>
302  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/29871895,26917558" target="blank">
302microRNAs</a></li>
303  <li><a href="https://jbiomedsem.biomedcentral.com/articles/10.1186/2041-1480-4-20" target="blank">Neuronal cellular components</a></li>
304  <li><a href="https://bmcmicrobiol.biomedcentral.com/articles/10.1186/s12866-015-0481-x" target="blank">Non-symbiotic multi-organism processes</a></li>
305  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/26825309" target="blank">Parkinson’s Disease</a></li>
306  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/23327938" target="blank">Peroxisome</a></li>
307  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/23981286" target="blank">Transcription</a></li>
308  <li><a href="https://www.ncbi.nlm.nih.gov/pubmed/28207819,25233094" target="blank">Viral processes</a></li>
309</ul>
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Line numbers count LF bytes from the start of the resource, as the search results do. Vendor segments are library code the classifier recognised; they are stored but not indexed. Bytes are shown as Latin1 characters, one per byte.