1<!DOCTYPE html> 2<html> 3 4 <head> 5 6 <meta charset="utf-8"> 7<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no"> 8<meta http-equiv="X-UA-Compatible" content="IE=edge"> 9 10<title> 11 12 Magali Champion 13 14 15 | Codes 16 17</title> 18<meta name="description" content="Professional web page of 19"> 20 21<!-- Open Graph --> 22 23 24<!-- Bootstrap & MDB --> 25<link href="https://stackpath.bootstrapcdn.com/bootstrap/4.5.2/css/bootstrap.min.css" rel="stylesheet" integrity="sha512-MoRNloxbStBcD8z3M/2BmnT+rg4IsMxPkXaGh2zD6LGNNFE80W3onsAhRcMAMrSoyWL9xD7Ert0men7vR8LUZg==" crossorigin="anonymous"> 26<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/mdbootstrap/4.19.1/css/mdb.min.css" integrity="sha512-RO38pBRxYH3SoOprtPTD86JFOclM51/XTIdEPh5j8sj4tp8jmQIx26twG52UaLi//hQldfrh7e51WzP9wuP32Q==" crossorigin="anonymous" /> 27 28<!-- Fonts & Icons --> 29<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.14.0/css/all.min.css" integrity="sha512-1PKOgIY59xJ8Co8+NE6FZ+LOAZKjy+KY8iq0G4B3CyeY6wYHN3yt9PW0XpSriVlkMXe40PTKnXrLnZ9+fkDaog==" crossorigin="anonymous"> 30<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/academicons/1.9.0/css/academicons.min.css" integrity="sha512-W4yqoT1+8NLkinBLBZko+dFB2ZbHsYLDdr50VElllRcNt2Q4/GSs6u71UHKxB7S6JEMCp5Ve4xjh3eGQl/HRvg==" crossorigin="anonymous"> 31<link rel="stylesheet" type="text/css" href="https://fonts.googleapis.com/css?family=Roboto:300,400,500,700|Roboto+Slab:100,300,400,500,700|Material+Icons"> 32 33<!-- Code Syntax Highlighting --> 34<link rel="stylesheet" href="https://gitcdn.link/repo/jwarby/jekyll-pygments-themes/master/github.css" /> 35 36<!-- Styles --> 37 38<link rel="icon" href="data:image/svg+xml,<svg xmlns=%22http://www.w3.org/2000/svg%22 viewBox=%220 0 100 100%22><text y=%22.9em%22 font-size=%2290%22>ð</text></svg>"> 39 40<link rel="stylesheet" href="/assets/css/main.css"> 41<link rel="canonical" href="/code/"> 42 43<!-- JQuery --> 44<!-- jQuery -->
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68 69 70 71 </head> 72 73 <body class="fixed-top-nav "> 74 75 <!-- Header --> 76 77 <header> 78 79 <!-- Nav Bar --> 80 <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top"> 81 <div class="container"> 82 83 <a class="navbar-brand title font-weight-lighter" href="/"> 84 <span class="font-weight-bold">Magali</span> <span class="font-weight-bold">Champion</span> 85 </a> 86 87 <!-- Navbar Toggle --> 88 <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> 89 <span class="sr-only">Toggle navigation</span> 90 <span class="icon-bar top-bar"></span> 91 <span class="icon-bar middle-bar"></span> 92 <span class="icon-bar bottom-bar"></span> 93 </button> 94 <div class="collapse navbar-collapse text-right" id="navbarNav"> 95 <ul class="navbar-nav ml-auto flex-nowrap"> 96 <!-- About --> 97 <li class="nav-item "> 98 <a class="nav-link" href="/"> 99 about 100 101 </a> 102 </li> 103 104 <!-- Other pages --> 105 106 107 108 109 110 111 112 113 114 115 116 117 <li class="nav-item active"> 118 <a class="nav-link" href="/code/"> 119 Codes 120 121 <span class="sr-only">(current)</span> 122 123 </a> 124 </li> 125 126 127 128 129 130 131 132 <li class="nav-item "> 133 <a class="nav-link" href="/publications/"> 134 Publications 135 136 </a> 137 </li> 138 139 140 141 142 143 <li class="nav-item "> 144 <a class="nav-link" href="/research/"> 145 Research 146 147 </a> 148 </li> 149 150 151 152 153 154 <li class="nav-item "> 155 <a class="nav-link" href="/talks/"> 156 Talks 157 158 </a> 159 </li> 160 161 162 163 164 165 <li class="nav-item "> 166 <a class="nav-link" href="/teaching/"> 167 Teaching 168 169 </a> 170 </li> 171 172 173 174 175 176 177 178 179 <div class = "toggle-container"> 180 <a id = "light-toggle"> 181 <i class="fas fa-moon"></i> 182 <i class="fas fa-sun"></i> 183 </a> 184 </div> 185 186 </ul> 187 </div> 188 </div> 189 </nav> 190 191</header> 192 193 194 <!-- Content --> 195 196 <div class="container mt-5"> 197 <div class="post"> 198 199 <header class="post-header"> 200 <h1 class="post-title">Codes</h1> 201 <p class="post-description"></p> 202 </header> 203 204 <article> 205 <p>You can find below a list of my public codes. Most of them are available on my <a href="https://github.com/magalichampion">github page</a>.</p> 206 207<div class="projects"> 208 209 <!-- Display categorized projects --> 210 211 <h2 class="category">R-package</h2> 212 213 214 <!-- Generate cards for each project --> 215 216 <div class="container"> 217 <div class="row row-cols-2"> 218 219 <div class="card-item col"> 220 221 <a href="https://cran.r-project.org/web/packages/l1spectral/index.html"> 222 223 <div class="card hoverable"> 224 <div class="row g-0"> 225 226 <div class="card-img col-md-6"> 227 <img src="/assets/img/RealGraph.png" alt="project thumbnail" /> 228 </div> 229 <div class="col-md-6"> 230 231 <div class="card-body"> 232 <h3 class="card-title">l1spectral</h3> 233 <p class="card-text">Official CRAN package for l1-spectral clustering</p> 234 <div class="row ml-1 mr-1 p-0"> 235 236 </div> 237 </div> 238 </div> 239 </div> 240 </div> 241 </a> 242</div> 243 244 245 <div class="card-item col"> 246 247 <a href="https://cran.r-project.org/web/packages/GADAG/index.html"> 248 249 <div class="card hoverable"> 250 <div class="row g-0"> 251 252 <div class="card-img col-md-6"> 253 <img src="/assets/img/croisement.png" alt="project thumbnail" /> 254 </div> 255 <div class="col-md-6"> 256 257 <div class="card-body"> 258 <h3 class="card-title">GADAG</h3> 259 <p class="card-text">Official CRAN package for learning Directed Acyclic Graphs (DAGs) using a genetic algorithm</p> 260 <div class="row ml-1 mr-1 p-0"> 261 262 </div> 263 </div> 264 </div> 265 </div> 266 </div> 267 </a> 268</div> 269 270 271 </div> 272 </div> 273 274 275 <h2 class="category">R codes</h2> 276 277 278 <!-- Generate cards for each project --> 279 280 <div class="container"> 281 <div class="row row-cols-2"> 282 283 <div class="card-item col"> 284 285 <a href="https://github.com/magalichampion/l1spectralclustering/"> 286 287 <div class="card hoverable"> 288 <div class="row g-0"> 289 290 <div class="card-img col-md-6"> 291 <img src="/assets/img/l1spectral.png" alt="project thumbnail" /> 292 </div> 293 <div class="col-md-6"> 294 295 <div class="card-body"> 296 <h3 class="card-title">l1-Spectral Clustering</h3> 297 <p class="card-text">R replication code for l1-spectral clustering simulations</p> 298 <div class="row ml-1 mr-1 p-0"> 299 300 </div> 301 </div> 302 </div> 303 </div> 304 </div> 305 </a> 306</div> 307 308 309 <div class="card-item col"> 310 311 <a href="https://github.com/furrer-lab/mabnsimstud"> 312 313 <div class="card hoverable"> 314 <div class="row g-0"> 315 316 <div class="card-img col-md-6"> 317 <img src="/assets/img/mABN.png" alt="project thumbnail" /> 318 </div> 319 <div class="col-md-6"> 320 321 <div class="card-body"> 322 <h3 class="card-title">mixed-ABN simulation study</h3> 323 <p class="card-text">R replication code for mixed-effects additive Bayesian networks simulations</p> 324 <div class="row ml-1 mr-1 p-0"> 325 326 </div> 327 </div> 328 </div> 329 </div> 330 </div> 331 </a> 332</div> 333 334 335 <div class="card-item col"> 336 337 <a href="https://github.com/magalichampion/LIONS_project"> 338 339 <div class="card hoverable"> 340 <div class="row g-0"> 341 342 <div class="card-img col-md-6"> 343 <img src="/assets/img/lions.png" alt="project thumbnail" /> 344 </div> 345 <div class="col-md-6"> 346 347 <div class="card-body"> 348 <h3 class="card-title">LIONS</h3> 349 <p class="card-text">R source code to identify deregulated genes in gene regulatory networks</p> 350 <div class="row ml-1 mr-1 p-0"> 351 352 </div> 353 </div> 354 </div> 355 </div> 356 </div> 357 </a> 358</div> 359 360 361 <div class="card-item col"> 362 363 <a href="https://bitbucket.org/gevaertlab/pancanceramaretto/src/master/"> 364 365 <div class="card hoverable"> 366 <div class="row g-0"> 367 368 <div class="card-img col-md-6"> 369 <img src="/assets/img/comm2.png" alt="project thumbnail" /> 370 </div> 371 <div class="col-md-6"> 372 373 <div class="card-body"> 374 <h3 class="card-title">AMARETTO</h3> 375 <p class="card-text">R source code to identify pancancer driver genes from multi-omics data</p> 376 <div class="row ml-1 mr-1 p-0"> 377 378 </div> 379 </div> 380 </div> 381 </div> 382 </div> 383 </a> 384</div> 385 386 387 </div> 388 </div> 389 390 391 392 393 394</div> 395 396 </article> 397 398</div> 399 400 </div> 401 402 <!-- Footer --> 403 404 405<footer class="fixed-bottom"> 406 <div class="container mt-0"> 407 ©
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