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26 </head> <body class="fixed-top-nav sticky-bottom-footer"> <header> <nav id="navbar" class="navbar navbar-light navbar-expand-sm fixed-top" role="navigation"> <div class="container"> <a class="navbar-brand title font-weight-lighter" href="/"> <span>Suguru</span> Nishijima </a> <button class="navbar-toggler collapsed ml-auto" type="button" data-toggle="collapse" data-target="#navbarNav" aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation"> <span class="sr-only">Toggle navigation</span> <span class="icon-bar top-bar"></span> <span class="icon-bar middle-bar"></span> <span class="icon-bar bottom-bar"></span> </button> <div class="collapse navbar-collapse text-right" id="navbarNav"> <ul class="navbar-nav ml-auto flex-nowrap"> <li class="nav-item "> <a class="nav-link" href="/">Home </a> </li> <li class="nav-item active"> <a class="nav-link" href="/publications/">Publications <span class="sr-only">(current)</span> </a> </li> <li class="nav-item "> <a 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class="publications"> <h2 class="bibliography">2026</h2> <ol class="bibliography"><li> <div class="row"> <div id="review_2026" class="col-sm-12 pub-entry" data-doi="10.2183/pjab.102.006"> <div class="title"><a href="https://doi.org/10.2183/pjab.102.006" rel="external nofollow noopener" target="_blank">The Japanese gut microbiome: ecology, uniqueness, and impact on health and disease</a></div> <div class="author-roles"> <span class="role-chip">First author</span><span class="role-chip">Corresponding author</span> </div> <div class="author"> <em>Suguru Nishijima<sup>†</sup></em>, Masahira Hattori<sup>†</sup>, and Naoyoshi Nagata<sup>†</sup> </div> <div class="periodical"> <em><strong>Proceedings of the Japan Academy, Series B</strong></em>, Feb 2026 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.2183/pjab.102.006"></span> <span class="__dimensions_badge_embed__" data-doi="10.2183/pjab.102.006" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.2183/pjab.102.006"></div> <a href="https://www.k.u-tokyo.ac.jp/information/category/press/0029170.html" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> <a href="https://www.k.u-tokyo.ac.jp/en/information/category/press/0029175.html" class="chip chip-press" rel="external nofollow noopener" target="_blank">Research Highlight</a> </div> </div> </div> </li></ol> <h2 class="bibliography">2025</h2> <ol class="bibliography"> <li> <div class="row"> <div id="VIRE_2025" class="col-sm-12 pub-entry" data-doi="10.1093/nar/gkaf1225"> <div class="title"><a href="https://doi.org/10.1093/nar/gkaf1225" rel="external nofollow noopener" target="_blank">VIRE: a metagenome-derived, planetary-scale virome resource with environmental context</a></div> <div class="author-roles"> <span class="role-chip">Co-first author</span><span class="role-chip">Corresponding author</span> </div> <div class="author"> <em>Suguru Nishijima<sup>*†</sup></em>, Anthony Fullam<sup>*</sup>, Thomas SB Schmidt<sup>*</sup>, Michael Kuhn, and Peer Bork<sup>†</sup> </div> <div class="periodical"> <em><strong>Nucleic Acids Research</strong></em>, Nov 2025 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1093/nar/gkaf1225"></span> <span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkaf1225" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1093/nar/gkaf1225"></div> <a href="https://www.k.u-tokyo.ac.jp/information/category/press/0028586.html" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> <a href="https://www.embl.org/news/science-technology/vire-a-global-data-platform-to-better-understand-viruses/" class="chip chip-press" rel="external nofollow noopener" target="_blank">Research Highlight</a> </div> </div> </div> </li> <li> <div class="row"> <div id="metalog_2025" class="col-sm-12 pub-entry" data-doi="10.1093/nar/gkaf1118"> <div class="title"><a href="https://doi.org/10.1093/nar/gkaf1118" rel="external nofollow noopener" target="_blank">Metalog: curated and harmonised contextual data for global metagenomics samples</a></div> <div class="author"> Michael Kuhn, Thomas Sebastian B Schmidt, Pamela Ferretti, Anna Głazek, Shahriyar Mahdi Robbani, Wasiu Akanni, Anthony Fullam, Christian Schudoma, Ela Cetin, Mariam Hassan, Kasimir Noack, Anna Schwarz, Roman Thielemann, Leonie Thomas, Moritz Stetten, Renato Alves, Anandhi Iyappan, Ece Kartal, Ivan Kel, Marisa I Keller, Oleksandr Maistrenko, Anna Mankowski, <em>Suguru Nishijima</em>, Daniel Podlesny, Jonas Schiller, Sarah Schulz, Thea Van Rossum, and Peer Bork </div> <div class="periodical"> <em><strong>Nucleic Acids Research</strong></em>, Oct 2025 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1093/nar/gkaf1118"></span> <span class="__dimensions_badge_embed__" data-doi="10.1093/nar/gkaf1118" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1093/nar/gkaf1118"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Hansen_2025" class="col-sm-12 pub-entry" data-doi="10.1038/s41467-025-60755-9"> <div class="title"><a href="https://doi.org/10.1038/s41467-025-60755-9" rel="external nofollow noopener" target="_blank">The postbiotic ReFerm® versus standard nutritional support in advanced alcohol-related liver disease (GALA-POSTBIO): a randomized controlled phase 2 trial</a></div> <div class="author"> Johanne K Hansen, Mads Israelsen, <em>Suguru Nishijima</em>, Sara E Stinson, Peter Andersen, Stine Johansen, Camilla D Hansen, Maximilian Joseph Brol, Sabine Klein, Robert Schierwagen, Frank 
26Erhard Uschner, Karolina Sulek, Ida F Villesen, Katrine P Lindvig, Katrine H Thorhauge, Nikolaj Torp, Jane M Jensen, Marisa Isabell Keller, Gitte H Jensen, Sönke Detlefsen, Diana J Leeming, Evelina Stankevic, Tommi Suvitaival, Andressa Zawadzki, Michael Kuhn, Lars Juhl Jensen, Morten Karsdal, Jonel Trebicka, Hans Israelsen, Cristina Legido-Quigley, Peer Bork, Manimozhiyan Arumugam, Torben Hansen, Maja Thiele, and Aleksander Krag </div> <div class="periodical"> <em><strong>Nature Communications</strong></em>, Jul 2025 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1038/s41467-025-60755-9"></span> <span class="__dimensions_badge_embed__" data-doi="10.1038/s41467-025-60755-9" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1038/s41467-025-60755-9"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Nishijima_2025" class="col-sm-12 pub-entry" data-doi="10.1016/j.cell.2024.10.022"> <div class="title"><a href="https://doi.org/10.1016/j.cell.2024.10.022" rel="external nofollow noopener" target="_blank">Fecal microbial load is a major determinant of gut microbiome variation and a confounder for disease associations</a></div> <div class="author-roles"><span class="role-chip">First author</span></div> <div class="author"> <em>Suguru Nishijima</em>, Evelina Stankevic, Oliver Aasmets, Thomas S.B. Schmidt, Naoyoshi Nagata, Marisa Isabell Keller, Pamela Ferretti, Helene Bæk Juel, Anthony Fullam, Shahriyar Mahdi Robbani, Christian Schudoma, Johanne Kragh Hansen, Louise Aas Holm, Mads Israelsen, Robert Schierwagen, Nikolaj Torp, Anja Telzerow, Rajna Hercog, Stefanie Kandels, Diënty H.M. Hazenbrink, Manimozhiyan Arumugam, Flemming Bendtsen, Charlotte Brøns, Cilius Esmann Fonvig, Jens-Christian Holm, Trine Nielsen, Julie Steen Pedersen, Maja Sofie Thiele, Jonel Trebicka, Elin Org, Aleksander Krag, Torben Hansen, Michael Kuhn, and Peer Bork </div> <div class="periodical"> <em><strong>Cell</strong></em>, Jan 2025 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1016/j.cell.2024.10.022"></span> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.cell.2024.10.022" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1016/j.cell.2024.10.022"></div> <a href="https://www.embl.org/news/science-technology/microbial-load-can-influence-disease-associations/" class="chip chip-press" rel="external nofollow noopener" target="_blank">Research Highlight</a> </div> </div> </div> </li> </ol> <h2 class="bibliography">2024</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Akiyama_2024" class="col-sm-12 pub-entry" data-doi="10.1038/s41467-024-54797-8"> <div class="title"><a href="https://doi.org/10.1038/s41467-024-54797-8" rel="external nofollow noopener" target="_blank">Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn’s disease</a></div> <div class="author-roles"><span class="role-chip">Corresponding author</span></div> <div class="author"> Shintaro Akiyama, <em>Suguru Nishijima<sup>†</sup></em>, Yasushi Kojima, Moto Kimura, Mitsuru Ohsugi, Kohjiro Ueki, Masashi Mizokami, Masahira Hattori, Kiichiro Tsuchiya, Naomi Uemura, Takashi Kawai, Peer Bork, and Naoyoshi Nagata </div> <div class="periodical"> <em><strong>Nature Communications</strong></em>, Nov 2024 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1038/s41467-024-54797-8"></span> <span class="__dimensions_badge_embed__" data-doi="10.1038/s41467-024-54797-8" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1038/s41467-024-54797-8"></div> <a href="https://www.tokyo-med.ac.jp/news/2024/1129_140000003560.html" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> </div> </div> </div> </li> <li> <div class="row"> <div id="Thiele_2024" class="col-sm-12 pub-entry" data-doi="10.1016/j.jhep.2024.03.035"> <div class="title"><a href="https://doi.org/10.1016/j.jhep.2024.03.035" rel="external nofollow noopener" target="_blank">Opportunities and barriers in omics-based biomarker discovery for steatotic liver diseases</a></div> <div class="author"> Maja Thiele, Ida Falk Villesen, Lili Niu, Stine Johansen, Karolina Sulek, <em>Suguru Nishijima</em>, Lore Van Espen, Marisa Keller, Mads Israelsen, Tommi Suvitaival, Andressa Zawadzki, Helene Bæk Juel, Maximilian Joseph Brol, Sara Elizabeth Stinson, Yun Huang, Maria Camilla Alvarez Silva, Michael Kuhn, Ema Anastasiadou, Diana Julie Leeming, Morten Karsdal, Jelle Matthijnssens, Manimozhiyan Arumugam, Louise Torp Dalgaard, Cristina Legido-Quigley, Matthias Mann, Jonel Trebicka, Peer Bork, Lars Juhl Jensen, Torben Hansen, and Ale
26ksander Krag </div> <div class="periodical"> <em><strong>Journal of Hepatology</strong></em>, Aug 2024 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1016/j.jhep.2024.03.035"></span> <span class="__dimensions_badge_embed__" data-doi="10.1016/j.jhep.2024.03.035" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1016/j.jhep.2024.03.035"></div> </div> </div> </div> </li> </ol> <h2 class="bibliography">2023</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Thiele_2023" class="col-sm-12 pub-entry" data-doi="10.1053/j.gastro.2023.02.023"> <div class="title"><a href="https://doi.org/10.1053/j.gastro.2023.02.023" rel="external nofollow noopener" target="_blank">Sphingolipids Are Depleted in Alcohol-Related Liver Fibrosis</a></div> <div class="author"> Maja Thiele, Tommi Suvitaival, Kristina Trošt, Mijin Kim, Andressa Zawadzki, Mikkel Kjaergaard, Dorte N. Rasmussen, Katrine P. Lindvig, Mads Israelsen, Sören Detlefsen, Peter Andersen, Helene B. Juel, Trine Nielsen, Sofia Georgiou, Valentina Filippa, Michael Kuhn, <em>Suguru Nishijima</em>, Luís Moitinho-Silva, Peter Rossing, Jonel Trebicka, Ema Anastasiadou, Peer Bork, Torben Hansen, Cristina Legido-Quigley, Aleksander Krag, Matthias Mann, Jelle Matthijnssens, Manimozhiyan Arumugam, Rob Henrar, Hans Israelsen, Morten Karsdal, and Hans Olav Melberg </div> <div class="periodical"> <em><strong>Gastroenterology</strong></em>, Jun 2023 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1053/j.gastro.2023.02.023"></span> <span class="__dimensions_badge_embed__" data-doi="10.1053/j.gastro.2023.02.023" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1053/j.gastro.2023.02.023"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Wuyts_2023" class="col-sm-12 pub-entry" data-doi="10.15252/msb.202311525"> <div class="title"><a href="https://doi.org/10.15252/msb.202311525" rel="external nofollow noopener" target="_blank">Consistency across multi-omics layers in a drug-perturbed gut microbial community</a></div> <div class="author-roles"><span class="role-chip">Co-first author</span></div> <div class="author"> Sander Wuyts<sup>*</sup>, Renato Alves<sup>*</sup>, Maria Zimmermann-Kogadeeva<sup>*</sup>, <em>Suguru Nishijima<sup>*</sup></em>, Sonja Blasche, Marja Driessen, Philipp E. Geyer, Rajna Hercog, Ece Kartal, Lisa Maier, Johannes B. Müller, Sarela Garcia Santamarina, Thomas Sebastian B. Schmidt, Daniel C. Sevin, Anja Telzerow, Peter V. Treit, Tobias Wenzel, Athanasios Typas, Kiran R. Patil, Matthias Mann, Michael Kuhn, and Peer Bork </div> <div class="periodical"> <em><strong>Molecular Systems Biology</strong></em>, Jul 2023 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.15252/msb.202311525"></span> <span class="__dimensions_badge_embed__" data-doi="10.15252/msb.202311525" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.15252/msb.202311525"></div> </div> </div> </div> </li> </ol> <h2 class="bibliography">2022</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Nishijima_2022" class="col-sm-12 pub-entry" data-doi="10.1038/s41467-022-32832-w"> <div class="title"><a href="https://doi.org/10.1038/s41467-022-32832-w" rel="external nofollow noopener" target="_blank">Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort</a></div> <div class="author-roles"> <span class="role-chip">Co-first author</span><span class="role-chip">Corresponding author</span> </div> <div class="author"> <em>Suguru Nishijima<sup>*†</sup></em>, Naoyoshi Nagata<sup>†*</sup>, Yuya Kiguchi, Yasushi Kojima, Tohru Miyoshi-Akiyama, Moto Kimura, Mitsuru Ohsugi, Kohjiro Ueki, Shinichi Oka, Masashi Mizokami, Takao Itoi, Takashi Kawai, Na
26omi Uemura, and Masahira Hattori </div> <div class="periodical"> <em><strong>Nature Communications</strong></em>, Sep 2022 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1038/s41467-022-32832-w"></span> <span class="__dimensions_badge_embed__" data-doi="10.1038/s41467-022-32832-w" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1038/s41467-022-32832-w"></div> <a href="https://www.waseda.jp/top/news/83864/" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> </div> </div> </div> </li> <li> <div class="row"> <div id="Nagata_2022a" class="col-sm-12 pub-entry" data-doi="10.1053/j.gastro.2022.03.054"> <div class="title"><a href="https://doi.org/10.1053/j.gastro.2022.03.054" rel="external nofollow noopener" target="_blank">Metagenomic Identification of Microbial Signatures Predicting Pancreatic Cancer From a Multinational Study</a></div> <div class="author-roles"> <span class="role-chip">Co-first author</span><span class="role-chip">Corresponding author</span> </div> <div class="author"> Naoyoshi Nagata<sup>†*</sup>, <em>Suguru Nishijima<sup>†*</sup></em>, Yasushi Kojima, Yuya Hisada, Koh Imbe, Tohru Miyoshi-Akiyama, Wataru Suda, Moto Kimura, Ryo Aoki, Katsunori Sekine, Mitsuru Ohsugi, Kuniko Miki, Tsuyoshi Osawa, Kohjiro Ueki, Shinichi Oka, Masashi Mizokami, Ece Kartal, Thomas S.B. Schmidt, Esther Molina-Montes, Lidia Estudillo, Nuria Malats, Jonel Trebicka, Stephan Kersting, Melanie Langheinrich, Peer Bork, Naomi Uemura, Takao Itoi, and Takashi Kawai </div> <div class="periodical"> <em><strong>Gastroenterology</strong></em>, Mar 2022 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1053/j.gastro.2022.03.054"></span> <span class="__dimensions_badge_embed__" data-doi="10.1053/j.gastro.2022.03.054" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1053/j.gastro.2022.03.054"></div> <a href="https://www.tokyo-med.ac.jp/news/20220419pressrelease.pdf" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> </div> </div> </div> </li> <li> <div class="row"> <div id="Nagata_2022b" class="col-sm-12 pub-entry" data-doi="10.1053/j.gastro.2022.06.070"> <div class="title"><a href="https://doi.org/10.1053/j.gastro.2022.06.070" rel="external nofollow noopener" target="_blank">Population-level metagenomics uncovers distinct effects of multiple medications on the human gut microbiome</a></div> <div class="author-roles"> <span class="role-chip">Co-first author</span><span class="role-chip">Corresponding author</span> </div> <div class="author"> Naoyoshi Nagata<sup>*†</sup>, <em>Suguru Nishijima<sup>†*</sup></em>, Tohru Miyoshi-Akiyama, Yasushi Kojima, Moto Kimura, Ryo Aoki, Mitsuru Ohsugi, Kohjiro Ueki, Kuniko Miki, Eri Iwata, Kayoko Hayakawa, Norio Ohmagari, Shinichi Oka, Masashi Mizokami, Takao Itoi, Takashi Kawai, Na
26omi Uemura, and Masahira Hattori </div> <div class="periodical"> <em><strong>Gastroenterology</strong></em>, Jul 2022 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1053/j.gastro.2022.06.070"></span> <span class="__dimensions_badge_embed__" data-doi="10.1053/j.gastro.2022.06.070" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1053/j.gastro.2022.06.070"></div> <a href="https://www.tokyo-med.ac.jp/news/20220720pressrelease.pdf" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> <a href="https://www.nikkei.com/article/DGXZQOUC062I60W3A001C2000000/" class="chip chip-press" rel="external nofollow noopener" target="_blank">新聞記事</a> </div> </div> </div> </li> </ol> <h2 class="bibliography">2021</h2> <ol class="bibliography"><li> <div class="row"> <div id="Kiguchi_2021" class="col-sm-12 pub-entry" data-doi="10.1093/dnares/dsab019"> <div class="title"><a href="https://doi.org/10.1093/dnares/dsab019" rel="external nofollow noopener" target="_blank">Long-read metagenomics of multiple displacement amplified DNA of low-biomass human gut phageomes by SACRA pre-processing chimeric reads</a></div> <div class="author"> Yuya Kiguchi, <em>Suguru Nishijima</em>, Naveen Kumar, Masahira Hattori, and Wataru Suda </div> <div class="periodical"> <em><strong>DNA Research</strong></em>, Sep 2021 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1093/dnares/dsab019"></span> <span class="__dimensions_badge_embed__" data-doi="10.1093/dnares/dsab019" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1093/dnares/dsab019"></div> </div> </div> </div> </li></ol> <h2 class="bibliography">2020</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Sato_2020" class="col-sm-12 pub-entry" data-doi="10.1128/mBio.01954-20"> <div class="title"><a href="https://doi.org/10.1128/mBio.01954-20" rel="external nofollow noopener" target="_blank">Emergence of the novel aminoglycoside acetyltransferase variant Aac(6’)-ib-d179y and acquisition of colistin heteroresistance in carbapenem-resistant Klebsiella pneumoniae due to a disrupting mutation in the DNA repair enzyme muts</a></div> <div class="author"> Takuya Sato, Takashi Wada, <em>Suguru Nishijima</em>, Yoko Fukushima, Chie Nakajima, Yasuhiko Suzuki, Shinya Takahashi, and Shin-Ichi Yokota </div> <div class="periodical"> <em><strong>mBio</strong></em>, Dec 2020 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1128/mBio.01954-20"></span> <span class="__dimensions_badge_embed__" data-doi="10.1128/mBio.01954-20" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1128/mBio.01954-20"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Hosoda_2020" class="col-sm-12 pub-entry" data-doi="10.1186/s40168-020-00864-3"> <div class="title"><a href="https://doi.org/10.1186/s40168-020-00864-3" rel="external nofollow noopener" target="_blank">Revealing the microbial assemblage structure in the human gut microbiome using latent Dirichlet allocation</a></div> <div class="author"> Shinichiro Hosoda, <em>Suguru Nishijima</em>, Taku Fukunaga, Masahira Hattori, and Michiaki Hamada </div> <div class="periodical"> <em><strong>Microbiome</strong></em>, Dec 2020 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1186/s40168-020-00864-3"></span> <span class="__dimensions_badge_embed__" data-doi="10.1186/s40168-020-00864-3" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1186/s40168-020-00864-3"></div> <a href="https://www.waseda.jp/top/news/69510" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> </div> </div> </div> </li> </ol> <h2 class="bibliography">2019</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Nagata_2019b" class="col-sm-12 pub-entry" data-doi="10.5582/ddt.2019.01071"> <div class="title"><a href="https://doi.org/10.5582/ddt.2019.01071" rel="external nofollow noopener" target="_blank">Effects of storage temperature, storage time, and Cary-Blair transport medium on the stability of the gut microbiota</a></div> <div class="author">
26 Naoyoshi Nagata, Mari Tohya, Fumihiko Takeuchi, Wataru Suda, <em>Suguru Nishijima</em>, Mitsuru Ohsugi, Kohjiro Ueki, Tetsuro Tsujimoto, Tomoka Nakamura, Takashi Kawai, Tohru Miyoshi-Akiyama, Naomi Uemura, and Masahira Hattori </div> <div class="periodical"> <em><strong>Drug Discoveries &amp; Therapeutics</strong></em>, Oct 2019 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.5582/ddt.2019.01071"></span> <span class="__dimensions_badge_embed__" data-doi="10.5582/ddt.2019.01071" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.5582/ddt.2019.01071"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Suzuki_2019" class="col-sm-12 pub-entry" data-doi="10.1186/s40168-019-0737-z"> <div class="title"><a href="https://doi.org/10.1186/s40168-019-0737-z" rel="external nofollow noopener" target="_blank">Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut</a></div> <div class="author-roles"><span class="role-chip">Co-first author</span></div> <div class="author"> Yoshihiko Suzuki<sup>*</sup>, <em>Suguru Nishijima<sup>*</sup></em>, Yoshikazu Furuta, Jun Yoshimura, Wataru Suda, Kenshiro Oshima, Masahira Hattori, and Shinichi Morishita </div> <div class="periodical"> <em><strong>Microbiome</strong></em>, Aug 2019 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1186/s40168-019-0737-z"></span> <span class="__dimensions_badge_embed__" data-doi="10.1186/s40168-019-0737-z" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1186/s40168-019-0737-z"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Nagata_2019a" class="col-sm-12 pub-entry" data-doi="10.1038/s41598-019-40182-9"> <div class="title"><a href="https://doi.org/10.1038/s41598-019-40182-9" rel="external nofollow noopener" target="_blank">Effects of bowel preparation on the human gut microbiome and metabolome</a></div> <div class="author"> Naoyoshi Nagata, Mari Tohya, Shinji Fukuda, Wataru Suda, <em>Suguru Nishijima</em>, Fumihiko Takeuchi, Mitsuru Ohsugi, Tetsuro Tsujimoto, Tomoka Nakamura, Akira Shimomura, Naohiro Yanagisawa, Yuya Hisada, Kazuhiro Watanabe, Koh Imbe, Junichi Akiyama, Masashi Mizokami, Tohru Miyoshi-Akiyama, Naomi Uemura, and Masahira Hattori </div> <div class="periodical"> <em><strong>Scientific Reports</strong></em>, Mar 2019 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1038/s41598-019-40182-9"></span> <span class="__dimensions_badge_embed__" data-doi="10.1038/s41598-019-40182-9" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1038/s41598-019-40182-9"></div> </div> </div> </div> </li> </ol> <h2 class="bibliography">2018</h2> <ol class="bibliography"><li> <div class="row"> <div id="Ohta_2018" class="col-sm-12 pub-entry" data-doi="10.1007/s10265-018-1017-x"> <div class="title"><a href="https://doi.org/10.1007/s10265-018-1017-x" rel="external nofollow noopener" target="_blank">Collaborative environmental DNA sampling from petal surfaces of flowering cherry Cerasus × yedoensis ’Somei-yoshino’ across the Japanese archipelago</a></div> <div class="author"> Takahiro Ohta, Takeshi Kawashima, Naoaki O. Shinozaki, Atsushi Dobashi, Satoshi Hiraoka, Tomohiro Hoshino, Kenta Kanno, Takashi Kataoka, Sayaka Kawashima, Masaru Matsui, Wakana Nemoto, <em>Suguru Nishijima</em>, Naoya Suganuma, Hiroshi Suzuki, Y.-H. Taguchi, Yuji Takenaka, Yuko Tanigawa, Masaki Tsuneyoshi, Keisuke Yoshitake, Yoshihiro Sato, Ryuichiro Yamashita, Kazuharu Arakawa, and Wataru Iwasaki </div> <div class="periodical"> <em><strong>Journal of Plant Research</strong></em>, Jun 2018 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1007/s10265-018-1017-x"></span> <span class="__dimensions_badge_embed__" data-doi="10.1007/s10265-018-1017-x" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1007/s10265-018-1017-x"></div> </div> </div> </div> </li></ol> <h2 class="bibliography">2017</h2> <ol class="bibliography"><li> <div class="row"> <div id="Takayasu_2017" class="col-sm-12 pub-entry" data-doi="10.1093/dnares/dsx001"> <div class="title"><a href="https://doi.org/10.1093/dnares/dsx001" rel="external nofollow noopener" target="_blank">Circadian oscillations of microbial and functional composition in the human salivary microbiome</a></div> <div class="author"> Lena Takayasu, Wataru Suda, Kageyasu Takanashi, Erica Iioka, Rina Kurokawa, Chie Shindo, Yasue Hattori, Naoko Yamashita, <em>Suguru Nishijima</em>, Kenshiro Oshima, and Masahira Hattori </div> <div class="periodical"> <em><strong>DNA Research</strong></em>, Jun 2017 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1093/dnares/dsx001"></span> <span class="__dimensions_badge_embed__" data-doi="10.1093/dnares/dsx001" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1093/dnares/dsx001"></div> </div> </div> </div> </li></ol> <h2 class="bibliography">2016</h2> <ol class="bibliography"> <li> <div class="row"> <div id="Igai_2016" class="col-sm-12 pub-entry" data-doi="10.1038/srep31942"> <div class="title"><a href="https://doi.org/10.1038/srep31942" rel="external nofollow noopener" target="_blank">Nitrogen fixation and nifH diversity in human gut microbiota</a></div> <div class="author"> Katsura Igai, Manabu Itakura, <em>Suguru Nishijima</em>, Hirohito Tsurumaru, Wataru Suda, Takumi Tsutaya, Eriko Tomitsuka, Kiyoshi Tadokoro, Jun Baba, Shingo Odani, Kazumi Natsuhara, Ayako Morita, Minoru Yoneda, Andrew R. Greenhill, Paul F. Horwood, Jun-ichi Inoue, Moriya Ohkuma, Yuichi Hongoh, Taro Yamamoto, Peter M. Siba, Masahira Hattori, Kiwamu Minamisawa, and Masahiro Umezaki </div> <div class="periodical"> <em><strong>Scientific Reports</strong></em>, Aug 2016 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1038/srep31942"></span> <span class="__dimensions_badge_embed__" data-doi="10.1038/srep31942" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1038/srep31942"></div> </div> </div> </div> </li> <li> <div class="row"> <div id="Nishijima_2016" class="col-sm-12 pub-entry" data-doi="10.1093/dnares/dsw002"> <div class="title"><a href="https://doi.org/10.1093/dnares/dsw002" rel="external nofollow noopener" target="_blank">The gut microbiome of healthy Japanese and its microbial and functional uniqueness</a></div> <div class="author-roles"><span class="role-chip">First author</span></div> <div class="author"> <em>Suguru Nishijima</em>, Wataru Suda, Kenshiro Oshima, Seok-Won Kim, Yuu Hirose, Hidetoshi Morita, and Masahira Hattori </div> <div class="periodical"> <em><strong>DNA Research</strong></em>, Mar 2016 </div> <div class="badges"> <span class="altmetric-embed" data-badge-type="donut" data-badge-popover="right" data-doi="10.1093/dnares/dsw002"></span> <span class="__dimensions_badge_embed__" data-doi="10.1093/dnares/dsw002" data-style="small_circle" data-legend="hover-right"></span> </div> <div class="pub-signals"> <div class="pub-metrics" data-metrics-for="10.1093/dnares/dsw002"></div> <a href="https://www.waseda.jp/top/news/39021" class="chip chip-press" rel="external nofollow noopener" target="_blank">プレスリリース</a> <a href="https://www.asahi.com/relife/article/14339144" class="chip chip-press" rel="external nofollow noopener" target="_blank">
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