http://wikigenomes.org/static/wiki/js/app/go-form/go-form.component.js

1angular
2    .module('goForm')
3    .component('goForm', {
4        controller: function ($routeParams, $filter, $location, evidenceCodes, sendToView, pubMedData, allGoTerms, locusTag2QID) {
5            var ctrl = this;
6
7            ctrl.$onInit = function () {
8                ctrl.currentTaxid = $routeParams.taxid;
9                ctrl.currentLocusTag = $routeParams.locusTag;
10                locusTag2QID.getLocusTag2QID(ctrl.currentLocusTag, ctrl.currentTaxid).then(function (data) {
11
12                    ctrl.geneQID = $filter('parseQID')(data.data.results.bindings[0].gene.value);
13                    ctrl.proteinQID = $filter('parseQID')(data.data.results.bindings[0].protein.value);
14
15                    var goClassMap = {
16                        'mf_button': {
17                            name: 'Molecular Function',
18                            QID: 'Q14860489'
19                        },
20                        'cc_button': {
21                            name: 'Cellular Component',
22                            QID: 'Q5058355'
23                        },
24                        'bp_button': {
25                            name: 'Biological Process',
26                            QID: 'Q2996394'
27                        }
28                    };
29
30                    ctrl.goFormModel = {
31                        evi: null,
32                        pub: null,
33                        go: null,
34                        proteinQID: ctrl.proteinQID,
35                        goClass: goClassMap[ctrl.goclass].QID
36                    };
37
38
39                    //controls for navigating form
40                    ctrl.pageCount = 0;
41                    ctrl.nextClick = function () {
42                        ctrl.pageCount += 1;
43                    };
44                    ctrl.backClick = function () {
45                        ctrl.pageCount -= 1;
46                    };
47
48                    //data collection for form query sets
49                    evidenceCodes.getevidenceCodes(function (data) {
50                        ctrl.evidence = data;
51                    });
52
53                    ctrl.selectGoTerm = function ($item, $model, $label) {
54                        ctrl.goFormModel.go = $item;
55                        ctrl.goValue = ''
56                    };
57
58                    ctrl.selectPub = function ($item, $model, $label) {
59                        ctrl.goFormModel.pub = $item;
60                        ctrl.pubValue = ''
61                    };
62
63
64                    ctrl.getGoTermsAll = function (val) {
65                        ctrl.goTermLoading = true;
66                        return allGoTerms.getGoTermsAll(val, goClassMap[ctrl.goclass].QID).then(
67                            function (data) {
68                                return data.data.results.bindings.map(function (item) {
69                                    return item;
70                                });
71                            }).finally(function () {
72                                ctrl.goTermLoading = false;
73                            }
74                        );
75                    };
76                    ctrl.getPMID = function (val) {
77                        return pubMedData.getPMID(val).then(
78                            function (data) {
79
80                                var resultData = [data.data.result[val]];
81                                return resultData.map(function (item) {
82                                    return item;
83                                });
84                            }
85                        );
86                    };
87
88
89                    //form validation, must be true to allow submission
90                    ctrl.validateFields = function () {
91                        if (ctrl.goFormModel.evi && ctrl.goFormModel.pub && ctrl.goFormModel.go) {
92                            return true
93                        }
94                    };
95
96                    //send form data to server to edit wikidata
97                    ctrl.sendData = function (formData) {
98                        ctrl.loading = true;
99
100                        var url_suf = $location.path() + '/wd_go_edit';
101                        console.log(url_suf);
102                        sendToView.sendToView(url_suf, formData).then(function (data) {
103                            if (data.data.write_success === true) {
104                                alert("Successfully Annotated! Well Done! The annotation will appear here in a few minutes.");
105                                ctrl.resetForm();
106                            }
107                            else {
108                                alert("Something went wrong.  Give it another shot!")
109                            }
110                        }).finally(function () {
111                            ctrl.loading = false;

112                        });
113
114                    };
115                    ctrl.resetForm = function () {
116                        ctrl.pageCount = 0;
117                        ctrl.goFormModel.evi = null;
118                        ctrl.goFormModel.pub = null;
119                        ctrl.goFormModel.go = null;
120                    };
121
122
123                });
124            };
125
126        },
127        templateUrl: '/static/wiki/js/angular_templates/guided-go-form.html',
128        bindings: {
129            goclass: '<',
130            gene: '<'
131        }
132
133    });
134
135
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137