https://www.uniprot.org/modern.5770.1a1005.js

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i="rectangle";return t.shape?t.shape||i:(null===(e=null==t?void 0:t.feature)||void 0===e?void 0:e.shape)?t.feature.shape||i:this.shape?this.shape:t.type?Vi(t.type):(null===(n=t.feature)||void 0===n?void 0:n.type)?Vi(t.feature.type):i}createTrack(){var t,e;o(this,tr,"f")&&(null===(t=this.layoutObj)||void 0===t||t.init(o(this,tr,"f")),null===(e=this.svg)||void 0===e||e.selectAll("g").remove(),this.svg=function(t){return"string"==typeof t?new bt([[document.querySelector(t)]],[document.documentElement]):new bt([[t]],$t)}(this).selectAll("svg").attr("width",this.width).attr("height",this.height),this.svg&&(this.seqG=this.svg.append("g").attr("class","sequence-features"),this.createFeatures(),this.highlighted=this.svg.append("g").attr("class","highlighted"),this.margins=this.svg.append("g").attr("class","margin")))}createFeatures(){var t;if(!this.seqG)return;const e=this.seqG.selectAll("g.feature-group").data(o(this,tr,"f")).enter().append("g").attr("class","feature-group").attr("id",t=>`g_${t.accession}`).selectAll("g.location-group").data(t=>(t.locations||[]).map(e=>Object.assign({},e,{feature:t}))).enter().append("g").attr("class","location-group"),n=e.selectAll("g.fragment-group").data(t=>t.fragments.map(e=>Object.assign({},e,{feature:t.feature}))).enter().append("g").attr("class","fragment-group");n.append("path").attr("class",t=>

2`${this.getShape(t)} feature`).attr("d",t=>{var e;return this.featureShape.getFeatureShape(this.getSingleBaseWidth(),(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureHeight())||0,t.end?t.end-t.start+1:1,this.getShape(t))}).attr("transform",t=>{var e;return`translate(${this.getXFromSeqPosition(t.start)},${(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureYPos(t.feature))||0})`}).style("fill",t=>this.getFeatureFillColor(t)).attr("stroke",t=>this.getFeatureColor(t)).style("fill-opacity",({feature:t})=>t.opacity?t.opacity:.9).style("stroke-opacity",({feature:t})=>t.opacity?t.opacity:.9);const r=n.selectAll("g.residue-group").data(t=>{var e;return t.feature.residuesToHighlight?[null===(e=t.feature.residuesToHighlight)||void 0===e?void 0:e.map(e=>Object.assign({},e,{feature:t.feature,position:e.position}))]:[]}).enter().append("g").attr("class","residue-group");n.append("rect").attr("class","outer-rectangle feature").attr("width",t=>Math.max(0,this.getSingleBaseWidth()*(t.end?t.end-t.start+1:1))).attr("height",(null===(t=this.layoutObj)||void 0===t?void 0:t.getFeatureHeight())||0).attr("transform",t=>{var e;return`translate(${this.getXFromSeqPosition(t.start)},${(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureYPos(t.feature))||0})`}).style("fill","transparent").attr("stroke","transparent").call(i.vY,this),r.selectAll("g.residue").data(t=>t).enter().append("path").attr("class",t=>

2`${this.getShape(t)} residue`).attr("d",t=>o(this,Ki,"m",er).call(this,t)).attr("transform",t=>{var e;return`translate(${this.getXFromSeqPosition(Number(t.feature.start)+Number(t.position)-1)+this.getSingleBaseWidth()/4},\n          ${null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureYPos(t.feature)})`}).attr("fill",Ji("RESIDUE")).style("fill-opacity",({feature:t})=>t.opacity?t.opacity:.9).style("stroke-opacity",({feature:t})=>t.opacity?t.opacity:.9).call(i.vY,this)}applyFilters(){(this.filters||[]).length<=0&&s(this,tr,o(this,Qi,"f"),"f")}refresh(){var t;if(this.xScale&&this.seqG){const e=this.seqG.selectAll("g.fragment-group").data(o(this,tr,"f").reduce((t,e)=>t.concat((e.locations||[]).reduce((t,n)=>t.concat(n.fragments.map(t=>Object.assign({},t,{feature:e}))),[])),[])),n=this.seqG.selectAll("g.residue-group").data(o(this,tr,"f").reduce((t,e)=>{var n;return t.concat([null===(n=e.residuesToHighlight)||void 0===n?void 0:n.reduce(t=>t.concat(t=>Object.assign({},t,{feature:e,position:t.position})),[])])},[]));e.selectAll("path.feature").attr("d",t=>{var e;return this.featureShape.getFeatureShape(this.getSingleBaseWidth(),(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureHeight())||0,(null==t?void 0:t.end)&&(null==t?void 0:t.start)?t.end-t.start+1:1,this.getShape(t))}).attr("transform",t=>{var e;return`translate(${this.getXFromSeqPosition(t.start||0)},${null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureYPos(t.feature)})`}),n.selectAll("path.residue").attr("d",t=>o(this,Ki,"m",er).call(this,t)).attr("transform",t=>{var e,n;return`translate(${this.getXFromSeqPosition(Number(null===(e=t.feature)||void 0===e?void 0:e.start)+Number(t.position)-1)+this.getSingleBaseWidth()/4},${null===(n=this.layoutObj)||void 0===n?void 0:n.getFeatureYPos(t.feature)})`}),e.selectAll("rect.outer-rectangle").attr("width",t=>Math.max(0,this.getSingleBaseWidth()*((null==t?void 0:t.end)&&(null==t?void 0:t.start)?t.end-t.start+1:1))).attr("height",(null===(t=this.layoutObj)||void 0===t?void 0:t.getFeatureHeight())||0).attr("transform",t=>{var e;return`translate(${this.getXFromSeqPosition(t.start||0)},${(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureYPos(t.feature))||0})`})}this.updateHighlight(),this.renderMarginOnGroup(this.margins)}updateHighlight(){if(!this.highlighted)return;const t=this.highlighted.selectAll("rect").data(this.highlightedRegion.segments);t.enter().append("rect").style("pointer-events","none").merge(t).attr("fill",this["highlight-color"]).attr("height",this.height).attr("x",t=>this.getXFromSeqPosition(t.start)).attr("width",t=>Math.max(0,this.getSingleBaseWidth()*(t.end-t.start+1))),t.exit().remove()}zoomRefreshed(){super.zoomRefreshed(),this.getWidthWithMargins()>0&&this.refresh()}firstUpdated(){this.createTrack()}render(){return Qn`<svg class="container"></svg>`}};Qi=new WeakMap,tr=new WeakMap,Ki=new WeakSet,er=function(t){var e;let n=1;const i=this.getSingleBaseWidth(),r=6-i;return i<6&&r>n&&(n=r),this.featureShape.getFeatureShape(i/2,(null===(e=this.layoutObj)||void 0===e?void 0:e.getFeatureHeight(t))||0,n,this.getShape(t))},r([_i({type:String})],rr.prototype,"color",void 0),r([_i({type:String})],rr.prototype,"shape",void 0),r([_i({type:String})],rr.prototype,"layout",void 0),rr=nr=r([(0,i.f2)("nightingale-track")],rr);var or=rr;n.d(e,["JJ",0,Ji])}}]);
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