1<!DOCTYPE html> 2<html lang="en"> 3 4<head> 5 <meta charset="UTF-8"> 6 <meta http-equiv="X-UA-Compatible" content="IE=edge"/> 7 <meta name="viewport" content="width=device-width, initial-scale=1.0"/> 8 <meta name="description" content="Integrative Genomics Viewer"/> 9 10 <title>IGV: Integrative Genomics Viewer</title> 11 12 <link rel="shortcut icon" href="//igv.org/web/img/favicon.ico"> 13 14 <!-- Fonts CSS --> 15 <link rel="stylesheet" type="text/css" href='//fonts.googleapis.com/css?family=PT+Sans:400,700'> 16 <link rel="stylesheet" type="text/css" href='//fonts.googleapis.com/css?family=Open+Sans'> 17 18 <!-- Font Awesome CSS --> 19 <!--<link href="https://use.fontawesome.com/releases/v5.0.6/css/all.css" rel="stylesheet">--> 20 <link href="//maxcdn.bootstrapcdn.com/font-awesome/4.3.0/css/font-awesome.min.css" rel="stylesheet"/> 21 22 <!-- Bootstrap 4 CSS --> 23 <link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.1.0/css/bootstrap.min.css"> 24 25 <!-- Site CSS --> 26 <link href="css/site.css" rel="stylesheet" type="text/css"/> 27 28 <!-- Bootstrap 4 and Dependancies JS --> 29
29<script src="https://code.jquery.com/jquery-3.3.1.slim.min.js"></script>
29 30
30<script src="https://cdnjs.cloudflare.com/ajax/libs/popper.js/1.12.9/umd/popper.min.js" 31 integrity="sha384-ApNbgh9B+Y1QKtv3Rn7W3mgPxhU9K/ScQsAP7hUibX39j7fakFPskvXusvfa0b4Q" 32 crossorigin="anonymous"></script>
32 33
33<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.1.3/js/bootstrap.min.js"></script>
33 34 35</head> 36 37<body> 38 39<header> 40 <div class="container-fluid igv-app-header"> 41 <div class="row"> 42 <div class="text-center col-sm-12"> 43 <h1>IGV</h1> 44 </div> 45 </div> 46 <div class="row"> 47 <div class="text-center col-sm-12"> 48 <h4>Integrative Genomics Viewer</h4> 49 </div> 50 </div> 51 </div> 52</header> 53 54<main> 55 56 <div class="container"> 57 58 <div class="row"> 59 60 <div class="igv-site-icon-container text-center col-lg-6"> 61 <a href="https://igv.org/doc/desktop" > 62 <div> 63 <div><i class="fa fa-desktop fa-2x"></i></div> 64 <div>IGV</div> 65 </div> 66 <div>IGV desktop application</div> 67 </a> 68 </div> 69 70 <div class="igv-site-icon-container text-center col-lg-6"> 71 <a href="https://igv.org/app/" > 72 <div> 73 <div><i class="fa fa-cloud fa-2x"></i></div> 74 <div>IGV Web App</div> 75 </div> 76 <div>IGV in a web browser</div> 77 </a> 78 </div> 79 80 </div> 81 82 <!-- For Developers row --> 83 <div class="row"> 84 <div class="col-lg igv-site-section-header text-left">For Developers</div> 85 </div> 86 87 <!-- igv.js --> 88 <div class="row"> 89 90 <div class="col-lg-3 mt-1 mb-1 igv-site-for-developers-icon"> 91 <div class="row mt-1 mb-1"> 92 <div class="col-lg text-center"> 93 <a href="https://github.com/igvteam/igv.js#igvjs"> 94 <div class="p-2"> 95 igv.js 96 </div> 97 </a> 98 </div> 99 </div> 100 </div> 101 102 <div class="col-lg mt-3 mb-2 text-left igv-site-section-body igv-app-pad-left-0"> 103 Use igv.js to embed an interactive genome visualization component in your web app. 104 </div> 105 106 </div> 107 108 <!-- igv-notebook --> 109 <div class="row"> 110 111 <div class="col-lg-3 mt-1 mb-1 igv-site-for-developers-icon"> 112 <div class="row mt-1 mb-1"> 113 <div class="col-lg text-center"> 114 <a href="https://github.com/igvteam/igv-notebook"> 115 <div class="p-2"> 116 igv-notebook 117 </div> 118 </a> 119 </div> 120 </div> 121 </div> 122 123 <div class="col-lg mt-3 mb-2 text-left igv-site-section-body igv-app-pad-left-0"> 124 A Python package that wraps igv.js for embedding in an IPython notebook. Supports both Jupyter and Google Colab. 125 </div> 126 127 </div> 128 129 <!-- reports --> 130 <div class="row"> 131 132 <div class="col-lg-3 mt-1 mb-1 igv-site-for-developers-icon"> 133 <div class="row mt-1 mb-1"> 134 <div class="col-lg text-center"> 135 <a href="https://github.com/igvteam/igv-reports"> 136 <div class="p-2"> 137 igv-reports 138 </div> 139 </a> 140 141 </div> 142 </div> 143 </div> 144 145 <div class="col-lg mt-3 mb-2 text-left igv-site-section-body igv-app-pad-left-0"> 146 Generate self-contained HTML reports that consist of a table of genomic sites and associated IGV views for each site. 147 </div> 148 149 </div> 150 151 <!-- blurb --> 152 <div class="row mt-3"> 153 <div class="col-lg igv-site-section-body"> 154 <p> 155 All IGV software is open source - MIT License.<br> 156 GitHub repos: 157 <a href="https://github.com/igvteam/igv"> 158 IGV Desktop 159 </a> 160 | 161 <a href="https://github.com/igvteam/igv-webapp"> 162 IGV Web App 163 </a> 164 | 165 <a href="https://github.com/igvteam/igv.js"> 166 igv.js 167 </a> 168 | 169 <a href="https://github.com/igvteam/igv-notebook"> 170 igv-notebook 171 </a> 172 | 173 <a href="https://github.com/igvteam/igv-reports"> 174 igv-reports 175 </a> 176 </p> 177 </div> 178 </div> 179 180 <!-- Citing IGV --> 181 <div class="row"> 182 <div class="col-lg igv-site-section-header text-left">Citing IGV</div> 183 </div> 184 185 <div class="row"> 186 187 <div class="col-lg text-left igv-site-section-body"> 188 <p>To cite your use of IGV in your publication, please reference one or more of: </p> 189 <p> 190 James T. Robinson, 191 Helga Thorvaldsdóttir, 192 Wendy Winckler, 193 Mitchell Guttman, 194 Eric S. Lander, 195 Gad Getz, 196 Jill P. Mesirov. 197 <a href="http://www.nature.com/nbt/journal/v29/n1/abs/nbt.1754.html"> 198 Integrative Genomics Viewer. Nature Biotechnology 29, 24â26 (2011). 199 </a> 200 A public access version is also available: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3346182/"> PMC3346182.</a> 201 </p> 202 <p> 203 Helga Thorvaldsdóttir, 204 James T. Robinson, 205 Jill P. Mesirov. <a href="https://academic.oup.com/bib/article/14/2/178/208453/Integrative-Genomics-Viewer-IGV-high-performance?searchresult=1"> 206 Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. 207 Briefings in Bioinformatics 14, 178-192 (2013).</a> 208 </p> 209 <p> 210 James T. Robinson, 211 Helga Thorvaldsdóttir, 212 Aaron M. Wenger, 213 Ahmet Zehir, 214 Jill P. Mesirov. <a href="http://cancerres.aacrjournals.org/content/77/21/e3
2141.long"> 215 Variant Review with the Integrative Genomics Viewer (IGV). Cancer Research 77(21) 31-34 (2017).</a> 216 </p> 217 <p> 218 James T. Robinson, 219 Helga Thorvaldsdóttir, 220 Douglass Turner, 221 Jill P. Mesirov. <a href="https://doi.org/10.1093/bioinformatics/btac830"> 222 igv.js: an embeddable JavaScript implementation of the Integrative Genomics Viewer (IGV). Bioinformatics, 39(1) (2023), btac830.</a> 223 </p> 224 </div> 225 226 </div> 227 228 <!-- Contact Us --> 229 <div class="row"> 230 <div class="col-lg igv-site-section-header text-left">Contact Us</div> 231 </div> 232 233 <div class="row"> 234 235 <div class="col-lg text-left igv-site-section-body"> 236 237 <p> The IGV Team is based at UC San Diego and the Broad Institute of MIT and Harvard. The best way to reach us is by posting to the 238 <a href="https://groups.google.com/group/igv-help"> <b>igv-help forum</b></a> or by creating issues in our 239 <b>GitHub repositories</b>. 240 Note we have separate repositories for the 241 <a href="https://github.com/igvteam/igv/issues">IGV desktop application</a>, 242 the <a href="https://github.com/igvteam/igv.js/issues">igv.js JavaScript component</a>, 243 the <a href="https://github.com/igvteam/igv-webapp/issues">IGV-Web app</a>, 244 <a href="https://github.com/igvteam/igv-notebook/issues">igv-notebook</a>, 245 and <a href="https://github.com/igvteam/igv-reports/issues">igv-reports</a>. 246 </p> 247 248 </div> 249 250 </div> 251 252 <!-- Funding --> 253 <div class="row"> 254 <div class="col-lg igv-site-section-header text-left">Funding</div> 255 </div> 256 257 <div class="row"> 258 259 <div class="col-lg text-left igv-site-section-body"> 260 261 <p>IGV development has been supported by funding from the <a href="http://cancer.gov">National Cancer Institute (NCI)</a> 262 of the <a href="https://www.nih.gov">National Institutes of Health</a>, 263 the <a href="https://itcr.nci.nih.gov">Informatics Technology for Cancer Reserarch (ITCR) </a>of the NCI, 264 and the <a href="http://www.starrcancer.org/starr/html/83159.cfm">Starr Cancer Consortium</a>. 265 </p> 266 267 </div> 268 269 </div> 270 </div> 271 272</main> 273 274<footer> 275 276 <div class="container-fluid"> 277 <div class="row"> 278 <div class="col-sm-12"> 279 280 <div class="igv-site-footer"> 281 282 <div> 283 <a href="doc/privacy.html" target="_blank"> 284 IGV Privacy Policy 285 </a> 286 </div> 287 288 <div> 289 <div> 290 <div id="igv-app-ucsd-logo"> 291 <a href="https://ucsd.edu/" target="_blank" title="University of California at San Diego"> 292 <img src="img/ucsd-logo.svg" width="123" height="24" alt="University of California at San Diego"> 293 </a> 294 </div> 295 <div id="igv-app-broad-logo"> 296 <a href="https://www.broadinstitute.org" target="_blank" title="Broad Institute home page"> 297 <img src="img/broad-institute-logo.svg" width="95" height="24" alt="Broad Institute logo"> 298 </a> 299 </div> 300 </div> 301 </div> 302 303 </div> 304 305 </div> 306 </div> 307 </div> 308 309</footer> 310 311</body> 312 313</html> 314
Line numbers count LF bytes from the start of the resource, as the search results do. Vendor segments are library code the classifier recognised; they are stored but not indexed. Bytes are shown as Latin1 characters, one per byte.