1"use strict";(self.webpackChunk_N_E=self.webpackChunk_N_E||[]).push([[978],{80978:(e,l,o)=>{o.r(l),o.d(l,{default:()=>a,gblocksFields:()=>n,getConfig:()=>s});let n=[{name:"smallerBlocks",label:"Allow smaller final blocks",type:"checkbox",defaultValue:!1,advanced:!1,tooltip:"Relaxes the minimum block length (default 5), allowing shorter conserved regions to be retained."},{name:"gapPositions",label:"Allow gap positions within the final blocks",type:"checkbox",defaultValue:!1,advanced:!1,tooltip:"When enabled, columns with gaps are tolerated inside conserved blocks."},{name:"lessStrict",label:"Allow less strict flaking positions",type:"checkbox",defaultValue:!1,advanced:!1},{name:"nonconservedPositions",label:"Do no allow many contiguous non-conserved positions",type:"checkbox",defaultValue:!1,advanced:!1}],a=n,s=()=>({name:"gblocks",version:"0.91b",module:"aln_curation/gblocks",enabled:!0,maxSequences:200,generateCommand:(e,l)=>{let o="Gblocks ".concat(e),n=8,a=10,s="n",t=.85;return l.smallerBlocks&&(a=5),l.gapPositions&&(s="h"),l.lessStrict&&(t=.55),l.nonconservedPositions&&(n=4),o+=" -b3=".concat(n," -b4=").concat(a," -b5=").concat(s," -r2=").concat(t),o+=" > gblocks.log 2>&1 ; sed '/^>/! s/ //g' ".concat(e,"-gb > alignment_clean.aln")}})}}]);
Line numbers count LF bytes from the start of the resource, as the search results do. Vendor segments are library code the classifier recognised; they are stored but not indexed. Bytes are shown as Latin1 characters, one per byte.