https://www.ilincs.org/ilincs/js/controllers/history.js

1angular
2  .module('app')
3  .controller('HistoryController', ['$scope','$state','modals','SignatureMeta','GeneInfo','signatures','storageFactory','envService',
4                function($scope,$state,modals,SignatureMeta,GeneInfo,signatures,storageFactory,envService) {
5
6  //internal functions
7  function renderTable(sigs){
8    // console.log(sigs);
9    SignatureMeta.findMany({signatures:sigs},
10       function(data){//sigList = data.content;
11                      // $scope.signatures=data;
12                      // console.log(data);
13                      // $scope.dataLoading=false;
14                      // console.log(sigList);
15                     $scope.customTheme = {
16                       iconUp: 'fa fa-sort-amount-asc pull-right samplesHead',
17                       iconDown: 'fa fa-sort-amount-desc pull-right samplesHead',
18                                   listItemsPerPage: [5,10,50],
19                                   itemsPerPage: 5,
20                                   loadOnInit: true
21                                 };
22
23                           $scope.resourceM = {
24                                 "header": //response.data.header,
25                                   [
26                                   { "check": "" },
27                                   { "signatureid": "Signature ID" },
28                                   { "libraryid": "Library" },
29                                   { "cellline":"Cell Line"},
30                                   { "tissue":"Tissue"},
31                                   { "factor": "Factor" }
32                                   ,{ "compound": "Compound"}
33                                   ],
34                                 "rows": data.data
35                               };
36                     },
37       function(errorResponse){console.log("Signature list not found."),console.log(errorResponse)});
38    // $scope.signatures=sigs;
39
40  }
41  
42  function getGeneInfo(geneList,check) {
43    // debugger;
44    //  $scope.genelist =[];
45    // $scope.list = localStorage.getObj("GeneList");
46    // $scope.list=["1","2","3"];
47    GeneInfo
48      //.find({ filter:{where: {or :[{geneid: {"inq": $scope.list}},{symbol: {"inq": $scope.list}}]}}})
49      .findMany({genes:geneList})
50      .$promise
51      .then(function(results) {
52        // console.log(results);
53        // $scope.genelist = results.data;
54        // $scope.allGenes(results.data); //??????
55        // if ($state.current.name=="genes.list"){
56        // $scope.defaultGenes(results.data); //??????
57        // }
58        // console.log('get genes from API')
59        //sleep(5000);
60        //  $scope.dataLoading = false;
61         getTasty(results.data,10,check);
62        //  $scope.foundGeneIds = $scope.genelist.map(function(a) {return a.geneid;});
63        //  $scope.foundGenesStr = $scope.foundGeneIds.toString();
64      });
65  }
66  
67  function getTasty(genelist,perPage,check) {
68  $scope.filterBy={"geneid":"","symbol":"","description":"","synonyms":""}
69  // console.log('initializing Tasty')
70  $scope.customGeneTheme = {
71                  // iconSortable:  'fa fa-exchange fa-rotate-90 pull-right samplesHead',
72                  iconUp: 'fa fa-sort-amount-asc pull-right samplesHead',
73                  iconDown: 'fa fa-sort-amount-desc pull-right samplesHead',
74                  listItemsPerPage: [5, 10, 25, 100],//[10, 20, 50, 100, 1000],
75                  itemsPerPage: perPage,
76                  loadOnInit: true
77                };
78      if (check) {
79                $scope.resource = {
80                      "header": //response.data.header,
81                        [
82                        { "check": "" },
83                        { "geneid": "Gene ID" },
84                        { "symbol": "Symbol" },
85                        { "description":"Description"},
86                        { "synonyms": "Synonyms" }
87                        ,{ "taxid": "Organism" }
88                      ],
89                      "rows": genelist
90                    };
91                  } else {
92          $scope.resource = {
93                "header": //response.data.header,
94                  [
95                  { "geneid": "Gene ID" },
96                  { "symbol": "Symbol" },
97                  { "description":"Description"},
98                  { "synonyms": "Synonyms" }
99                  ,{ "taxid": "Organism" }
100                ],
101                "rows": genelist
102                  }
103                };
104
105}
106
107  function getSessionStorage(name) {
108    if (localStorage.getObj(name)) {
109      return localStorage.getObj(name);
110    } else {
111      return [];
112    }
113    
114  }
115  //scope functions
116  
117  $scope.modifyGenes = function(){
118  //   // console.info("geneListNum : ",$state.params.geneListNum);
119  //   localStorage.setObj("GeneList",[]);
120  //   localStorage.setItem('GeneString',[]);
121  //   GeneList
122  //   .findOne({filter:{where:{id:$state.params.geneListNum}}})
123  //    //  .find({ filter:{where:{and:[{lincsDsgc:{neq:"NA"}},{lincsDsgc:{neq:null}}]}}})
124  //    // {"limit":10,"where":{"and":[{"lincsDsgc":{"neq":"NA"}},{"lincsDsgc":{"neq":null}}]}} //explorer
125  //    // {"limit":10,"where":{"or":[{"lincsDsgc":{"neq":null}}]}
126  //    //.find({ filter:{limit: 5}})
127  //  //  Platforms
128  //  //      .inPortal({platform: "LINCS"})
129  //    .$promise
130  //    .then(function(data) {
131  //      $scope.geneListData = data;
132       $state.go('genes.list',{genes:$scope.localGenes});
133    //   //  $scope.list =$scope.geneListData.content.split(',');
134    //   //  getGeneInfo()
135    //  });
136
137  }
138
139//init  function
140init = function() {
141  if (envService.is('production')) {
142      $scope.environment="production";
143  }
144  else {
145      $scope.environment="development";
146  }
147  // console.log("History Controller in place");
148  $scope.signaturesF=signatures;
149  $scope.modalsF=modals;
150  // if (envService.is('production')) {
151  //       $scope.environment="production";
152  // }
153  // else {
154  //       $scope.environment="development";
155  // }
156  if (localStorage.getObj("SignatureListStorage")) {
157    $scope.localSigs = localStorage.getObj("SignatureListStorage");
158  } else {
159    $scope.localSigs = [];
160  }
161  renderTable($scope.localSigs);
162  $scope.filterBySig={}
163  
164  //Uploaded Signatures
165  // if (localStorage.getObj("uploadedSignature")) {
166  //   $scope.uploadedSignature = localStorage.getObj("uploadedSignature");
167  // } else {
168  //   $scope.uploadedSignature = {};
169  // }
170  
171  //////Genes
172  if (localStorage.getObj("GeneList")) {
173    $scope.localGenes = localStorage.getObj("GeneList");
174  } else {
175    $scope.localGenes = [];
176  }
177  
178  getGeneInfo($scope.localGenes);
179  // getTasty($scope.localGenes)
180  
181  //////analysis results
182  // $scope.resultsHistory = getSessionStorage('resultsHistory');
183
184  //////signature list history
185  // $scope.signatureListHistory = getSessionStorage('signatureListHistory');
186  
187  //////gene list history
188  // $scope.geneListHistory = getSessionStorage('geneListHistory');
189  
190  //////gene list current
191  // $scope.geneListCurrent = getSessionStorage('GeneList');
192  
193  $scope.currentDataset= storageFactory.getSessionStorage('currentDataset',true);
194
195  }
196
197//begining of initializing PerturbagenController
198init();
199
200  }]);