https://www.ilincs.org/ilincs/js/controllers/geneInfo.js

1angular
2  .module('app')
3  .controller('geneInfoController', ['$scope','$filter','$state','$window','$location','$http','genes','modals','Utils','envService','ngMeta',
4                function($scope,$filter,$state,$window,$location,$http,genes,modals,Utils,envService,ngMeta) {
5
6  //internal functions
7
8  function onSuccessGetGeneInfo(result){
9    // console.log("success");
10    $scope.geneInfo=result;
11    $scope.geneSynonyms=result.synonyms.replaceAll("|",", ");
12    $scope.dbxrefs=result.dbxrefs.split("|");
13    $scope.geneRefs = {};
14    result.dbxrefs.split('|').forEach(function(x){
15        var arr = x.split(':');
16        arr[1] && ($scope.geneRefs[arr[0]] = arr[1]);
17    });
18    // ngMeta.setTitle('Compound info page of '+$scope.compoundInfo.compound);
19    // ngMeta.setTag('Canonical','/ilincs'+$location.$$path);
20    // $scope.genes=genes.current.content;
21    // $scope.genesNotEmpty=genes.current.content.length;
22    // if (!$scope.genesNotEmpty) {
23    //   onErrorGetGenes("Empty Genelist");
24    // } else {
25    // $scope.resolved=true;
26    // }
27    ngMeta.setTag('keywords',result.symbol+","+result.synonyms.replaceAll("|",",")+","+result.dbxrefs.replaceAll("|",","));
28    ngMeta.setTag('description','Gene '+result.symbol+' related signatures in iLINCS. '+result.description);
29    // console.log("test");
30    // console.log($scope.geneInfo.geneid);
31    $scope.genesF.isL1000($scope.geneInfo.geneid,null,onSuccessIsL1000);
32    $scope.genesF.isP100($scope.geneInfo.geneid,null,onSuccessIsP100);
33    
34  };
35  
36  function onSuccessIsL1000(result){
37    $scope.geneInfo.L1000=result.L1000;
38    // console.log($scope.L1000);      
39  }
40  
41  function onSuccessIsP100(result){
42    $scope.geneInfo.P100=result.P100;        
43  }
44  
45  
46  function onSuccessGetGeneInfoFromHarmonizome(result){
47    // console.log("Harmonizome success");
48    $scope.geneInfoHarmonizome=result;
49    // $scope.geneInfoHarmonizomeProteins=result.proteins.map("symbol");
50    // var myMap = new Map()
51    var proteins = result.proteins.map(function(a) {return a.symbol;});
52    // console.log(proteins);
53    $scope.geneInfoHarmonizomeProteins=proteins.join(', ');
54    
55  };
56  //
57   function onErrorGetGeneInfo(err){
58     console.log("error");
59     $scope.errorMessage=err;
60     $scope.resolved=true;
61   };
62
63   //scope functions
64
65
66//init  function
67init = function() {
68// $scope.geneId=$state.params.id;
69$scope.geneName=$state.params.name;
70
71$scope.modalsF=modals;
72$scope.genesF=genes;
73
74genes.getGeneInfoBySymbolCb($scope.geneName,onSuccessGetGeneInfo,onErrorGetGeneInfo);
75genes.getGeneInfoFromHarmonizome($scope.geneName,onSuccessGetGeneInfoFromHarmonizome,onErrorGetGeneInfo);
76
77  // ngMeta.setTitle('Gene '+$state.params.name+' related datasets and signatures in');
78  ngMeta.setTitle('Gene '+$state.params.name+' info and related signatures in');
79  ngMeta.setTag('Canonical','/ilincs'+$location.$$path);
80//
81  if (envService.is('production')) {
82        $scope.environment="production";
83  }
84  else {
85        $scope.environment="development";
86  }
87//
88//   $scope.modalsF=modals;
89//   $scope.compoundsF=compoundsFactory;
90//
91//   // $scope.libIDs = signatures.libIDs();
92//
93//   // $scope.term=$state.params.term;
94//   $scope.LSMname=$state.params.name;
95//   // $scope.results=signatures.results;
96//   compoundsFactory.getOneCompoundCb($scope.LSMname,onSuccessGetOneCompound,onErrorGetOneCompound);
97//
98//
99//   $scope.imgUrl="http://life.ccs.miami.edu/life/web/images/sm-images/400/"+$scope.LSMname+".png";
100//   // $scope.imageExist = function() {
101//           Utils.isImage($scope.imgUrl).then(function(result) {
102//               $scope.imageExist = result;
103//           });
104//       // };
105//
106//   // if ($state.current.name=="signatures.search.pharmAction.action"){
107//   //     $scope.activePharmAction=$state.params.action;
108//   // }
109//   // $scope.LDPdata = $resource('http://lincsportal.ccs.miami.edu/dcic/api/fetchentities?searchTerm=:searchTerm',
110//   //                  {searchTerm:$scope.name}, {
111//   //                   get: {method:'GET', params:{searchTerm:true}}
112//   //                  });
113//   $http({
114//       url: 'http://lincsportal.ccs.miami.edu/dcic/api/fetchentities?searchTerm='+$scope.LSMname,
115//       method: 'GET'
116//         // data: $httpParamSerializer({input:payload}),
117//       // headers: {
118//       //   'Content-Type': 'application/x-www-form-urlencoded'
119//       // }
120//     }).then(function(response) {
121//       $scope.status = response.status;
122//       $scope.data = response.data;
123//       $scope.LDPdata = response.data
124//       $scope.PubChemId=$scope.LDPdata.results.documents[0].SM_PubChem_CID[0];
125//       ngMeta.setTag('keywords',$scope.LDPdata.results.documents[0].entityName[0]+', '+$scope.LDPdata.results.documents[0].SM_Alternative_Name.join(', '));
126//       ngMeta.setTag('description',$scope.LDPdata.results.documents[0].SM_Drug_Information[0].substr(0, 156));
127//          }
128//    ,function(response) {
129//           $scope.data = response.data || 'Request failed';
130//           $scope.status = response.status;
131//       });
132//

133// console.log($window.expressionAtlasHeatmapHighcharts);
134// $window.expressionAtlasHeatmapHighcharts.render({
135//     query: {
136//       gene: $state.params.name
137//     },
138//     isMultiExperiment: true,
139//     target: "heatmapContainer"
140// });
141
142}
143
144//begining of initializing PerturbagenController
145init();
146
147  }]);