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29 * jQuery UI Keycode 1.12.1 30 * http://jqueryui.com 31 * 32 * Copyright jQuery Foundation and other contributors 33 * Released under the MIT license. 34 * http://jquery.org/license 35 */ 36/*! 37 * jQuery UI Keycode 1.12.1 38 * http://jqueryui.com 39 * 40 * Copyright jQuery Foundation and other contributors 41 * Released under the MIT license. 42 * http://jquery.org/license 43 */ 44(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./version"],t)}else{t(jQuery)}})(function(t){return t.ui.keyCode={BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38}}); 45/*! 46 * jQuery UI Datepicker 1.12.1 47 * http://jqueryui.com 48 * 49 * Copyright jQuery Foundation and other contributors 50 * Released under the MIT license. 51 * http://jquery.org/license 52 */ 53/*! 54 * jQuery UI Datepicker 1.12.1 55 * http://jqueryui.com 56 * 57 * Copyright jQuery Foundation and other contributors 58 * Released under the MIT license. 59 * http://jquery.org/license 60 */ 61(function(t){if(typeof define==="function"&&define.amd){define(["jquery","../version","../keycode"],t)}else{t(jQuery)}})(function(t){t.extend(t.ui,{datepicker:{version:"1.12.1"}});var e;function n(t){var e,n;while(t.length&&t[0]!==document){e=t.css("position");if(e==="absolute"||e==="relative"||e==="fixed"){n=parseInt(t.css("zIndex"),10);if(!isNaN(n)&&n!==0){return n}}t=t.parent()}return 0}function i(){this._curInst=null;this._keyEvent=false;this._disabledInputs=[];this._datepickerShowing=false;this._inDialog=false;this._mainDivId="ui-datepicker-div";this._inlineClass="ui-datepicker-inline";this._appendClass="ui-datepicker-append";this._triggerClass="ui-datepicker-trigger";this._dialogClass="ui-datepicker-dialog";this._disableClass="ui-datepicker-disabled";this._unselectableClass="ui-datepicker-unselectable";this._currentClass="ui-datepicker-current-day";this._dayOverClass="ui-datepicker-days-cell-over";this.regional=[];this.regional[""]={closeText:"Done",prevText:"Prev",nextText:"Next",currentText:"Today",monthNames:["January","February","March","April","May","June","July","August","September","October","November","December"],monthNamesShort:["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"],dayNames:["Sunday","Monday","Tuesday","Wednesday","Thursday","Frid
61ay","Saturday"],dayNamesShort:["Sun","Mon","Tue","Wed","Thu","Fri","Sat"],dayNamesMin:["Su","Mo","Tu","We","Th","Fr","Sa"],weekHeader:"Wk",dateFormat:"mm/dd/yy",firstDay:0,isRTL:false,showMonthAfterYear:false,yearSuffix:""};this._defaults={showOn:"focus",showAnim:"fadeIn",showOptions:{},defaultDate:null,appendText:"",buttonText:"...",buttonImage:"",buttonImageOnly:false,hideIfNoPrevNext:false,navigationAsDateFormat:false,gotoCurrent:false,changeMonth:false,changeYear:false,yearRange:"c-10:c+10",showOtherMonths:false,selectOtherMonths:false,showWeek:false,calculateWeek:this.iso8601Week,shortYearCutoff:"+10",minDate:null,maxDate:null,duration:"fast",beforeShowDay:null,beforeShow:null,onSelect:null,onChangeMonthYear:null,onClose:null,numberOfMonths:1,showCurrentAtPos:0,stepMonths:1,stepBigMonths:12,altField:"",altFormat:"",constrainInput:true,showButtonPanel:false,autoSize:false,disabled:false};t.extend(this._defaults,this.regional[""]);this.regional.en=t.extend(true,{},this.regional[""]);this.regional["en-US"]=t.extend(true,{},this.regional.en);this.dpDiv=r(t("<div id='"+this._mainDivId+"' class='ui-datepicker ui-widget ui-widget-content ui-helper-clearfix ui-corner-all'></div>"))}t.extend(i.prototype,{markerClassName:"hasDatepicker",maxRows:4,_widgetDatepicker:function(){return this.dpDiv},setDefaults:function(t){o(this._defaults,t||{});return this},_attachDatepicker:function(e,n){var i,r,s;i=e.nodeName.toLowerCase();r=i==="div"||i==="span";if(!e.id){this.uuid+=1;e.id="dp"+this.uuid}s=this._newInst(t(e),r);s.settings=t.extend({},n||{});if(i==="input"){this._connectDatepicker(e,s)}else if(r){this._inlineDatepicker(e,s)}},_newInst:function(e,n){var i=e[0].id.replace(/([^A-Za-z0-9_\-])/g,"\\\\$1");return{id:i,input:e,selectedDay:0,selectedMonth:0,selectedYear:0,drawMonth:0,drawYear:0,inline:n,dpDiv:!n?this.dpDiv:r(t("<div class='"+this._inlineClass+" ui-datepicker ui-widget ui-widget-content ui-helper-clearfix ui-corner-all'></div>"))}},_connectDatepicker:function(e,n){var i=t(e);n.append=t([]);n.trigger=t([]);if(i.hasClass(this.markerClassName)){return}this._attachments(i,n);i.addClass(this.markerClassName).on("keydown",this._doKeyDown).on("keypress",this._doKeyPress).on("keyup",this._doKeyUp);this._autoSize(n);t.data(e,"datepicker",n);if(n.settings.disabled){this._disableDatepicker(e)}},_attachments:function(e,n){var i,r,s,o=this._get(n,"appendText"),a=this._get(n,"isRTL");if(n.append){n.append.remove()}if(o){n.append=t("<span class='"+this._appendClass+"'>"+o+"</span>");e[a?"before":"after"](n.append)}e.off("focus",this._showDatepicker);if(n.trigger){n.trigger.remove()}i=this._get(n,"showOn");if(i==="focus"||i==="both"){e.on("focus",this._showDatepicker)}if(i==="button"||i==="both"){r=this._get(n,"buttonText");s=this._get(n,"buttonImage");n.trigger=t(this._get(n,"buttonImageOnly")?t("<img/>").addClass(this._triggerClass).attr({src:s,alt:r,title:r}):t("<button type='button'></button>").addClass(this._triggerClass).html(!s?r:t("<img/>").attr({src:s,alt:r,title:r})));e[a?"before":"after"](n.trigger);n.trigger.on("click",function(){if(t.datepicker._datepickerShowing&&t.datepicker._lastInput===e[0]){t.datepicker._hideDatepicker()}else if(t.datepicker._datepickerShowing&&t.datepicker._lastInput!==e[0]){t.datepicker._hideDatepicker();t.datepicker._showDatepicker(e[0])}else{t.datepicker._showDatepicker(e[0])}return false})}},_autoSize:function(t){if(this._get(t,"autoSize")&&!t.inline){var e,n,i,r,s=new Date(2009,12-1,20),o=this._get(t,"dateFormat");if(o.match(/[DM]/)){e=function(t){n=0;i=0;for(r=0;r<t.length;r++){if(t[r].length>n){n=t[r].length;i=r}}return i};s.setMonth(e(this._get(t,o.match(/MM/)?"monthNames":"monthNamesShort")));s.setDate(e(this._get(t,o.match(/DD/)?"dayNames":"dayNamesShort"))+20-s.getDay())}t.input.attr("size",this._formatDate(t,s).length)}},_inlineDatepicker:function(e,n){var i=t(e);if(i.hasClass(this.markerClassName)){return}i.addClass(this.markerClassName).append(n.dpDiv);t.data(e,"datepicker",n);this._setDate(n,this._getDefaultDate(n),true);this._updateDatepicker(n);this._updateAlternate(n);if(n.settings.disabled){this._disableDatepicker(e)}n.dpDiv.css("display","block")},_dialogDatepicker:function(e,n,i,r,s){var a,l,c,u,h,f=this._dialogInst;if(!f){this.uuid+=1;a="dp"+this.uuid;this._dialogInput=t("<input type='text' id='"+a+"' style='position: absolute; top: -100px; width: 0px;'/>");
61this._dialogInput.on("keydown",this._doKeyDown);t("body").append(this._dialogInput);f=this._dialogInst=this._newInst(this._dialogInput,false);f.settings={};t.data(this._dialogInput[0],"datepicker",f)}o(f.settings,r||{});n=n&&n.constructor===Date?this._formatDate(f,n):n;this._dialogInput.val(n);this._pos=s?s.length?s:[s.pageX,s.pageY]:null;if(!this._pos){l=document.documentElement.clientWidth;c=document.documentElement.clientHeight;u=document.documentElement.scrollLeft||document.body.scrollLeft;h=document.documentElement.scrollTop||document.body.scrollTop;this._pos=[l/2-100+u,c/2-150+h]}this._dialogInput.css("left",this._pos[0]+20+"px").css("top",this._pos[1]+"px");f.settings.onSelect=i;this._inDialog=true;this.dpDiv.addClass(this._dialogClass);this._showDatepicker(this._dialogInput[0]);if(t.blockUI){t.blockUI(this.dpDiv)}t.data(this._dialogInput[0],"datepicker",f);return this},_destroyDatepicker:function(n){var i,r=t(n),s=t.data(n,"datepicker");if(!r.hasClass(this.markerClassName)){return}i=n.nodeName.toLowerCase();t.removeData(n,"datepicker");if(i==="input"){s.append.remove();s.trigger.remove();r.removeClass(this.markerClassName).off("focus",this._showDatepicker).off("keydown",this._doKeyDown).off("keypress",this._doKeyPress).off("keyup",this._doKeyUp)}else if(i==="div"||i==="span"){r.removeClass(this.markerClassName).empty()}if(e===s){e=null}},_enableDatepicker:function(e){var n,i,r=t(e),s=t.data(e,"datepicker");if(!r.hasClass(this.markerClassName)){return}n=e.nodeName.toLowerCase();if(n==="input"){e.disabled=false;s.trigger.filter("button").each(function(){this.disabled=false}).end().filter("img").css({opacity:"1.0",cursor:""})}else if(n==="div"||n==="span"){i=r.children("."+this._inlineClass);i.children().removeClass("ui-state-disabled");i.find("select.ui-datepicker-month, select.ui-datepicker-year").prop("disabled",false)}this._disabledInputs=t.map(this._disabledInputs,function(t){return t===e?null:t})},_disableDatepicker:function(e){var n,i,r=t(e),s=t.data(e,"datepicker");if(!r.hasClass(this.markerClassName)){return}n=e.nodeName.toLowerCase();if(n==="input"){e.disabled=true;s.trigger.filter("button").each(function(){this.disabled=true}).end().filter("img").css({opacity:"0.5",cursor:"default"})}else if(n==="div"||n==="span"){i=r.children("."+this._inlineClass);i.children().addClass("ui-state-disabled");i.find("select.ui-datepicker-month, select.ui-datepicker-year").prop("disabled",true)}this._disabledInputs=t.map(this._disabledInputs,function(t){return t===e?null:t});this._disabledInputs[this._disabledInputs.length]=e},_isDisabledDatepicker:function(t){if(!t){return false}for(var e=0;e<this._disabledInputs.length;e++){if(this._disabledInputs[e]===t){return true}}return false},_getInst:function(e){try{return t.data(e,"datepicker")}catch(n){throw"Missing instance data for this datepicker"}},_optionDatepicker:function(e,n,i){var r,s,a,l,c=this._getInst(e);if(arguments.length===2&&typeof n==="string"){return n==="defaults"?t.extend({},t.datepicker._defaults):c?n==="all"?t.extend({},c.settings):this._get(c,n):null}r=n||{};if(typeof n==="string"){r={};r[n]=i}if(c){if(this._curInst===c){this._hideDatepicker()}s=this._getDateDatepicker(e,true);a=this._getMinMaxDate(c,"min");l=this._getMinMaxDate(c,"max");o(c.settings,r);if(a!==null&&r.dateFormat!==undefined&&r.minDate===undefined){c.settings.minDate=this._formatDate(c,a)}if(l!==null&&r.dateFormat!==undefined&&r.maxDate===undefined){c.settings.maxDate=this._formatDate(c,l)}if("disabled"in r){if(r.disabled){this._disableDatepicker(e)}else{this._enableDatepicker(e)}}this._attachments(t(e),c);this._autoSize(c);this._setDate(c,s);this._updateAlternate(c);this._updateDatepicker(c)}},_changeDatepicker:function(t,e,n){this._optionDatepicker(t,e,n)},_refreshDatepicker:function(t){var e=this._getInst(t);if(e){this._updateDatepicker(e)}},_setDateDatepicker:function(t,e){var n=this._getInst(t);if(n){this._setDate(n,e);this._updateDatepicker(n);this._updateAlternate(n)}},_getDateDatepicker:function(t,e){var n=this._getInst(t);if(n&&!n.inline){this._setDateFromField(n,e)}return n?this._getDate(n):null},_doKeyDown:function(e){var n,i,r,s=t.datepicker._getInst(e.target),o=true,a=s.dpDiv.is(".ui-datepicker-rtl");s._keyEvent=true;if(t.datepicker._datepickerShowing){switch(e.keyCode){case 9:t.datepicker._hideDatepicker();o=false;break;case 13:r=t("td."+t.datepicker._dayOverClass+":not(."+t.datepicker._currentClass+")",s.dpDiv);if(r[0]){t.datepicker._selectDay(e.target,s.selectedMonth,s.selectedYear,r[0])}n=t.datepicker._get(s,"onSelect");if(n){i=t.datepicker._formatDate(s);
61n.apply(s.input?s.input[0]:null,[i,s])}else{t.datepicker._hideDatepicker()}return false;case 27:t.datepicker._hideDatepicker();break;case 33:t.datepicker._adjustDate(e.target,e.ctrlKey?-t.datepicker._get(s,"stepBigMonths"):-t.datepicker._get(s,"stepMonths"),"M");break;case 34:t.datepicker._adjustDate(e.target,e.ctrlKey?+t.datepicker._get(s,"stepBigMonths"):+t.datepicker._get(s,"stepMonths"),"M");break;case 35:if(e.ctrlKey||e.metaKey){t.datepicker._clearDate(e.target)}o=e.ctrlKey||e.metaKey;break;case 36:if(e.ctrlKey||e.metaKey){t.datepicker._gotoToday(e.target)}o=e.ctrlKey||e.metaKey;break;case 37:if(e.ctrlKey||e.metaKey){t.datepicker._adjustDate(e.target,a?+1:-1,"D")}o=e.ctrlKey||e.metaKey;if(e.originalEvent.altKey){t.datepicker._adjustDate(e.target,e.ctrlKey?-t.datepicker._get(s,"stepBigMonths"):-t.datepicker._get(s,"stepMonths"),"M")}break;case 38:if(e.ctrlKey||e.metaKey){t.datepicker._adjustDate(e.target,-7,"D")}o=e.ctrlKey||e.metaKey;break;case 39:if(e.ctrlKey||e.metaKey){t.datepicker._adjustDate(e.target,a?-1:+1,"D")}o=e.ctrlKey||e.metaKey;if(e.originalEvent.altKey){t.datepicker._adjustDate(e.target,e.ctrlKey?+t.datepicker._get(s,"stepBigMonths"):+t.datepicker._get(s,"stepMonths"),"M")}break;case 40:if(e.ctrlKey||e.metaKey){t.datepicker._adjustDate(e.target,+7,"D")}o=e.ctrlKey||e.metaKey;break;default:o=false}}else if(e.keyCode===36&&e.ctrlKey){t.datepicker._showDatepicker(this)}else{o=false}if(o){e.preventDefault();e.stopPropagation()}},_doKeyPress:function(e){var n,i,r=t.datepicker._getInst(e.target);if(t.datepicker._get(r,"constrainInput")){n=t.datepicker._possibleChars(t.datepicker._get(r,"dateFormat"));i=String.fromCharCode(e.charCode==null?e.keyCode:e.charCode);return e.ctrlKey||e.metaKey||(i<" "||!n||n.indexOf(i)>-1)}},_doKeyUp:function(e){var n,i=t.datepicker._getInst(e.target);if(i.input.val()!==i.lastVal){try{n=t.datepicker.parseDate(t.datepicker._get(i,"dateFormat"),i.input?i.input.val():null,t.datepicker._getFormatConfig(i));if(n){t.datepicker._setDateFromField(i);t.datepicker._updateAlternate(i);t.datepicker._updateDatepicker(i)}}catch(r){}}return true},_showDatepicker:function(e){e=e.target||e;if(e.nodeName.toLowerCase()!=="input"){e=t("input",e.parentNode)[0]}if(t.datepicker._isDisabledDatepicker(e)||t.datepicker._lastInput===e){return}var i,r,s,a,l,c,u;i=t.datepicker._getInst(e);if(t.datepicker._curInst&&t.datepicker._curInst!==i){t.datepicker._curInst.dpDiv.stop(true,true);if(i&&t.datepicker._datepickerShowing){t.datepicker._hideDatepicker(t.datepicker._curInst.input[0])}}r=t.datepicker._get(i,"beforeShow");s=r?r.apply(e,[e,i]):{};if(s===false){return}o(i.settings,s);i.lastVal=null;t.datepicker._lastInput=e;t.datepicker._setDateFromField(i);if(t.datepicker._inDialog){e.value=""}if(!t.datepicker._pos){t.datepicker._pos=t.datepicker._findPos(e);t.datepicker._pos[1]+=e.offsetHeight}a=false;t(e).parents().each(function(){a|=t(this).css("position")==="fixed";return!a});l={left:t.datepicker._pos[0],top:t.datepicker._pos[1]};t.datepicker._pos=null;i.dpDiv.empty();i.dpDiv.css({position:"absolute",display:"block",top:"-1000px"});t.datepicker._updateDatepicker(i);l=t.datepicker._checkOffset(i,l,a);i.dpDiv.css({position:t.datepicker._inDialog&&t.blockUI?"static":a?"fixed":"absolute",display:"none",left:l.left+"px",top:l.top+"px"});if(!i.inline){c=t.datepicker._get(i,"showAnim");u=t.datepicker._get(i,"duration");i.dpDiv.css("z-index",n(t(e))+1);t.datepicker._datepickerShowing=true;if(t.effects&&t.effects.effect[c]){i.dpDiv.show(c,t.datepicker._get(i,"showOptions"),u)}else{i.dpDiv[c||"show"](c?u:null)}if(t.datepicker._shouldFocusInput(i)){i.input.trigger("focus")}t.datepicker._curInst=i}},_updateDatepicker:function(n){this.maxRows=4;e=n;n.dpDiv.empty().append(this._generateHTML(n));this._attachHandlers(n);var i,r=this._getNumberOfMonths(n),o=r[1],a=17,l=n.dpDiv.find("."+this._dayOverClass+" a");if(l.length>0){s.apply(l.get(0))}n.dpDiv.removeClass("ui-datepicker-multi-2 ui-datepicker-multi-3 ui-datepicker-multi-4").width("");if(o>1){n.dpDiv.addClass("ui-datepicker-multi-"+o).css("width",a*o+"em")}n.dpDiv[(r[0]!==1||r[1]!==1?"add":"remove")+"Class"]("ui-datepicker-multi");n.dpDiv[(this._get(n,"isRTL")?"add":"remove")+"Class"]("ui-datepicker-rtl");if(n===t.datepicker._curInst&&t.datepicker._datepickerShowing&&t.datepicker._shouldFocusInput(n)){n.input.trigger("focus")}if(n.yearshtml){i=n.yearshtml;setTimeout(function(){if(i===n.yearshtml&&n.yearshtml){n.dpDiv.find("select.ui-datepicker-year:first").replaceWith(n.yearshtml)}i=n.yearshtml=null},0)}},_shouldFocusInput:function(t){return t.input&&t.input.is(":visible")&&!t.input.is(":disabled")&&!t.input.is(":focus")},_checkOffset:function(e,n,i){var r=e.dpDiv.outerWidth(),s=e.dpDiv.outerHeight(),o=e.input?e.input.outerWidth():0,a=e.input?e.input.outerHeight():0,l=document.documentElement.clientWidth+(i?0:t(document).scrollLeft()),c=document.documentElement.clientHeight+(i?0:t(document).scrollTop());n.left-=this._get(e,"isRTL")?r-o:0;n.left-=i&&n.left===e.input.offset().left?t(document).scrollLeft():0;n.top-=i&&n.top===e.input.offset().top+a?t(document).scrollTop():0;n.left-=Math.min(n.left,n.left+r>l&&l>r?Math.abs(n.left+r-l):0);n.top-=Math.min(n.top,n.top+s>c&&c>s?Math.abs(s+a):0);return n},_findPos:function(e){var n,i=this._getInst(e),r=this._get(i,"isRTL");while(e&&(e.type==="hidden"||e.nodeType!==1||t.expr.filters.hidden(e))){e=e[r?"previousSibling":"nextSibling"]}n=t(e).offset();return[n.left,n.top]},_hideDatepicker:function(e){var n,i,r,s,o=this._curInst;if(!o||e&&o!==t.data(e,"datepicker")){return}if(this._datepickerShowing){n=this._get(o,"showAnim");i=this._get(o,"duration");r=function(){t.datepicker._tidyDialog(o)};if(t.effects&&(t.effects.effect[n]||t.effects[n])){o.dpDiv.hide(n,t.datepicker._get(o,"showOptions"),i,r)}else{o.dpDiv[n==="slideDown"?"slideUp":n==="fadeIn"?"fadeOut":"hide"](n?i:null,r)}if(!n){r()}this._datepickerShowing=false;s=this._get(o,"onClose");if(s){s.apply(o.input?o.input[0]:null,[o.input?o.input.val():"",o])}this._lastInput=null;if(this._inDialog){this._dialogInput.css({position:"absolute",left:"0",top:"-100px"});if(t.blockUI){t.unblockUI();t("body").append(this.dpDiv)}}this._inDialog=false}},_tidyDialog:function(t){t.dpDiv.removeClass(this._dialogClass).off(".ui-datepicker-calendar")},_checkExternalClick:function(e){if(!t.datepicker._curInst){return}var n=t(e.target),i=t.datepicker._getInst(n[0]);if(n[0].id!==t.datepicker._mainDivId&&n.parents("#"+t.datepicker._mainDivId).length===0&&!n.hasClass(t.datepicker.markerClassName)&&!n.closest("."+t.datepicker._triggerClass).length&&t.datepicker._datepickerShowing&&!(t.datepicker._inDialog&&t.blockUI)||n.hasClass(t.datepicker.markerClassName)&&t.datepicker._curInst!==i){t.datepicker._hideDatepicker()}},_adjustDate:function(e,n,i){var r=t(e),s=this._getInst(r[0]);if(this._isDisabledDatepicker(r[0])){return}this._adjustInstDate(s,n+(i==="M"?this._get(s,"showCurrentAtPos"):0),i);this._updateDatepicker(s)},_gotoToday:function(e){var n,i=t(e),r=this._getInst(i[0]);if(this._get(r,"gotoCurrent")&&r.currentDay){r.selectedDay=r.currentDay;r.drawMonth=r.selectedMonth=r.currentMonth;r.drawYear=r.selectedYear=r.currentYear}else{n=new Date;r.selectedDay=n.getDate();r.drawMonth=r.selectedMonth=n.getMonth();r.drawYear=r.selectedYear=n.getFullYear()}this._notifyChange(r);this._adjustDate(i)},_selectMonthYear:function(e,n,i){var r=t(e),s=this._getInst(r[0]);s["selected"+(i==="M"?"Month":"Year")]=s["draw"+(i==="M"?"Month":"Year")]=parseInt(n.options[n.selectedIndex].value,10);this._notifyChange(s);this._adjustDate(r)},_selectDay:function(e,n,i,r){var s,o=t(e);if(t(r).hasClass(this._unselectableClass)||this._isDisabledDatepicker(o[0])){return}s=this._getInst(o[0]);s.selectedDay=s.currentDay=t("a",r).html();s.selectedMonth=s.currentMonth=n;s.selectedYear=s.currentYear=i;this._selectDate(e,this._formatDate(s,s.currentDay,s.currentMonth,s.currentYear))},_clearDate:function(e){var n=t(e);this._selectDate(n,"")},_selectDate:function(e,n){var i,r=t(e),s=this._getInst(r[0]);n=n!=null?n:this._formatDate(s);if(s.input){s.input.val(n)}this._updateAlternate(s);i=this._get(s,"onSelect");if(i){i.apply(s.input?s.input[0]:null,[n,s])}else if(s.input){s.input.trigger("change")}if(s.inline){this._updateDatepicker(s)}else{this._hideDatepicker();this._lastInput=s.input[0];if(typeof s.input[0]!=="object"){s.input.trigger("focus")}this._lastInput=null}},_updateAlternate:function(e){var n,i,r,s=this._get(e,"altField");if(s){n=this._get(e,"altFormat")||this._get(e,"dateFormat");i=this._getDate(e);r=this.formatDate(n,i,this._getFormatConfig(e));t(s).val(r)}}
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61try{s=this.parseDate(n,i,o)||r}catch(a){i=e?"":i}t.selectedDay=s.getDate();t.drawMonth=t.selectedMonth=s.getMonth();t.drawYear=t.selectedYear=s.getFullYear();t.currentDay=i?s.getDate():0;t.currentMonth=i?s.getMonth():0;t.currentYear=i?s.getFullYear():0;this._adjustInstDate(t)},_getDefaultDate:function(t){return this._restrictMinMax(t,this._determineDate(t,this._get(t,"defaultDate"),new Date))},_determineDate:function(e,n,i){var r=function(t){var e=new Date;e.setDate(e.getDate()+t);return e},s=function(n){try{return t.datepicker.parseDate(t.datepicker._get(e,"dateFormat"),n,t.datepicker._getFormatConfig(e))}catch(c){}var i=(n.toLowerCase().match(/^c/)?t.datepicker._getDate(e):null)||new Date,r=i.getFullYear(),s=i.getMonth(),o=i.getDate(),a=/([+\-]?[0-9]+)\s*(d|D|w|W|m|M|y|Y)?/g,l=a.exec(n);while(l){switch(l[2]||"d"){case"d":case"D":o+=parseInt(l[1],10);break;case"w":case"W":o+=parseInt(l[1],10)*7;break;case"m":case"M":s+=parseInt(l[1],10);o=Math.min(o,t.datepicker._getDaysInMonth(r,s));break;case"y":case"Y":r+=parseInt(l[1],10);o=Math.min(o,t.datepicker._getDaysInMonth(r,s));break}l=a.exec(n)}return new Date(r,s,o)},o=n==null||n===""?i:typeof n==="string"?s(n):typeof n==="number"?isNaN(n)?i:r(n):new Date(n.getTime());o=o&&o.toString()==="Invalid Date"?i:o;if(o){o.setHours(0);o.setMinutes(0);o.setSeconds(0);o.setMilliseconds(0)}return this._daylightSavingAdjust(o)},_daylightSavingAdjust:function(t){if(!t){return null}t.setHours(t.getHours()>12?t.getHours()+2:0);return t},_setDate:function(t,e,n){var i=!e,r=t.selectedMonth,s=t.selectedYear,o=this._restrictMinMax(t,this._determineDate(t,e,new Date));t.selectedDay=t.currentDay=o.getDate();t.drawMonth=t.selectedMonth=t.currentMonth=o.getMonth();t.drawYear=t.selectedYear=t.currentYear=o.getFullYear();if((r!==t.selectedMonth||s!==t.selectedYear)&&!n){this._notifyChange(t)}this._adjustInstDate(t);if(t.input){t.input.val(i?"":this._formatDate(t))}},_getDate:function(t){var e=!t.currentYear||t.input&&t.input.val()===""?null:this._daylightSavingAdjust(new Date(t.currentYear,t.currentMonth,t.currentDay));return e},_attachHandlers:function(e){var n=this._get(e,"stepMonths"),i="#"+e.id.replace(/\\\\/g,"\\");e.dpDiv.find("[data-handler]").map(function(){var e={prev:function(){t.datepicker._adjustDate(i,-n,"M")},next:function(){t.datepicker._adjustDate(i,+n,"M")},hide:function(){t.datepicker._hideDatepicker()},today:function(){t.datepicker._gotoToday(i)},selectDay:function(){t.datepicker._selectDay(i,+this.getAttribute("data-month"),+this.getAttribute("data-year"),this);return false},selectMonth:function(){t.datepicker._selectMonthYear(i,this,"M");return false},selectYear:function(){t.datepicker._selectMonthYear(i,this,"Y");return false}};t(this).on(this.getAttribute("data-event"),e[this.getAttribute("data-handler")])})},_generateHTML:function(t){var e,n,i,r,s,o,a,l,c,u,h,f,d,p,m,g,_,v,y,b,x,w,k,S,M,T,C,A,D,E,N,z,P,j,I,$,R,L,F,O=new Date,H=this._daylightSavingAdjust(new Date(O.getFullYear(),O.getMonth(),O.getDate())),V=this._get(t,"isRTL"),q=this._get(t,"showButtonPanel"),B=this._get(t,"hideIfNoPrevNext"),U=this._get(t,"navigationAsDateFormat"),W=this._getNumberOfMonths(t),Y=this._get(t,"showCurrentAtPos"),X=this._get(t,"stepMonths"),J=W[0]!==1||W[1]!==1,G=this._daylightSavingAdjust(!t.currentDay?new Date(9999,9,9):new Date(t.currentYear,t.currentMonth,t.currentDay)),K=this._getMinMaxDate(t,"min"),Z=this._getMinMaxDate(t,"max"),Q=t.drawMonth-Y,tt=t.drawYear;if(Q<0){Q+=12;tt--}if(Z){e=this._daylightSavingAdjust(new Date(Z.getFullYear(),Z.getMonth()-W[0]*W[1]+1,Z.getDate()));e=K&&e<K?K:e;while(this._daylightSavingAdjust(new Date(tt,Q,1))>e){Q--;if(Q<0){Q=11;tt--}}}t.drawMonth=Q;t.drawYear=tt;n=this._get(t,"prevText");n=!U?n:this.formatDate(n,this._daylightSavingAdjust(new Date(tt,Q-X,1)),this._getFormatConfig(t));i=this._canAdjustMonth(t,-1,tt,Q)?"<a class='ui-datepicker-prev ui-corner-all' data-handler='prev' data-event='click'"+" title='"+n+"'><span class='ui-icon ui-icon-circle-triangle-"+(V?"e":"w")+"'>"+n+"</span></a>":B?"":"<a class='ui-datepicker-prev ui-corner-all ui-state-disabled' title='"+n+"'><span class='ui-icon ui-icon-circle-triangle-"+(V?"e":"w")+"'>"+n+"</span></a>";r=this._get(t,"nextText");r=!U?r:this.formatDate(r,this._daylightSavingAdjust(new Date(tt,Q+X,1)),this._getFormatConfig(t));s=this._canAdjustMonth(t,+1,tt,Q)?"<a class='ui-datepicker-next ui-corner-all' data-handler='next' data-event='click'"+" title='"+r+"'><span class='ui-icon ui-icon-circle-triangle-"+(V?"w":"e")+"'>"+r+"</span></a>":B?"":"<a class='ui-datepicker-next ui-corner-all ui-state-disabled' title='"+r+"'><span class='ui-icon ui-icon-circle-triangle-"+(V?"w":"e")+"'>"+r+"</span></a>";o=this._get(t,"currentText");a=this._get(t,"gotoCurrent")&&t.currentDay?G:H;o=!U?o:this.formatDate(o,a,this._getFormatConfig(t));l=!t.inline?"<button type='button' class='ui-datepicker-close ui-state-default ui-priority-primary ui-corner-all' data-handler='hide' data-event='click'>"+this._get(t,"closeText")+"</button>":"";c=q?"<div class='ui-datepicker-buttonpane ui-widget-content'>"+(V?l:"")+(this._isInRange(t,a)?"<button type='button' class='ui-datepicker-current ui-state-default ui-priority-secondary ui-corner-all' data-handler='today' data-event='click'"+">"+o+"</button>":"")+(V?"":l)+"</div>":"";u=parseInt(this._get(t,"firstDay"),10);u=isNaN(u)?0:u;h=this._get(t,"showWeek");f=this._get(t,"dayNames");d=this._get(t,"dayNamesMin");p=this._get(t,"monthNames");m=this._get(t,"monthNamesShort");
vendor: 3,153 bytes, line 61
61g=this._get(t,"beforeShowDay");_=this._get(t,"showOtherMonths");v=this._get(t,"selectOtherMonths");y=this._getDefaultDate(t);b="";for(w=0;w<W[0];w++){k="";this.maxRows=4;for(S=0;S<W[1];S++){M=this._daylightSavingAdjust(new Date(tt,Q,t.selectedDay));T=" ui-corner-all";C="";if(J){C+="<div class='ui-datepicker-group";if(W[1]>1){switch(S){case 0:C+=" ui-datepicker-group-first";T=" ui-corner-"+(V?"right":"left");break;case W[1]-1:C+=" ui-datepicker-group-last";T=" ui-corner-"+(V?"left":"right");break;default:C+=" ui-datepicker-group-middle";T="";break}}C+="'>"}C+="<div class='ui-datepicker-header ui-widget-header ui-helper-clearfix"+T+"'>"+(/all|left/.test(T)&&w===0?V?s:i:"")+(/all|right/.test(T)&&w===0?V?i:s:"")+this._generateMonthYearHeader(t,Q,tt,K,Z,w>0||S>0,p,m)+"</div><table class='ui-datepicker-calendar'><thead>"+"<tr>";A=h?"<th class='ui-datepicker-week-col'>"+this._get(t,"weekHeader")+"</th>":"";for(x=0;x<7;x++){D=(x+u)%7;A+="<th scope='col'"+((x+u+6)%7>=5?" class='ui-datepicker-week-end'":"")+">"+"<span title='"+f[D]+"'>"+d[D]+"</span></th>"}C+=A+"</tr></thead><tbody>";E=this._getDaysInMonth(tt,Q);if(tt===t.selectedYear&&Q===t.selectedMonth){t.selectedDay=Math.min(t.selectedDay,E)}N=(this._getFirstDayOfMonth(tt,Q)-u+7)%7;z=Math.ceil((N+E)/7);P=J?this.maxRows>z?this.maxRows:z:z;this.maxRows=P;j=this._daylightSavingAdjust(new Date(tt,Q,1-N));for(I=0;I<P;I++){C+="<tr>";$=!h?"":"<td class='ui-datepicker-week-col'>"+this._get(t,"calculateWeek")(j)+"</td>";for(x=0;x<7;x++){R=g?g.apply(t.input?t.input[0]:null,[j]):[true,""];L=j.getMonth()!==Q;F=L&&!v||!R[0]||K&&j<K||Z&&j>Z;$+="<td class='"+((x+u+6)%7>=5?" ui-datepicker-week-end":"")+(L?" ui-datepicker-other-month":"")+(j.getTime()===M.getTime()&&Q===t.selectedMonth&&t._keyEvent||y.getTime()===j.getTime()&&y.getTime()===M.getTime()?" "+this._dayOverClass:"")+(F?" "+this._unselectableClass+" ui-state-disabled":"")+(L&&!_?"":" "+R[1]+(j.getTime()===G.getTime()?" "+this._currentClass:"")+(j.getTime()===H.getTime()?" ui-datepicker-today":""))+"'"+((!L||_)&&R[2]?" title='"+R[2].replace(/'/g,"'")+"'":"")+(F?"":" data-handler='selectDay' data-event='click' data-month='"+j.getMonth()+"' data-year='"+j.getFullYear()+"'")+">"+(L&&!_?" ":F?"<span class='ui-state-default'>"+j.getDate()+"</span>":"<a class='ui-state-default"+(j.getTime()===H.getTime()?" ui-state-highlight":"")+(j.getTime()===G.getTime()?" ui-state-active":"")+(L?" ui-priority-secondary":"")+"' href='#'>"+j.getDate()+"</a>")+"</td>";j.setDate(j.getDate()+1);j=this._daylightSavingAdjust(j)}C+=$+"</tr>"}Q++;if(Q>11){Q=0;tt++}C+="</tbody></table>"+(J?"</div>"+(W[0]>0&&S===W[1]-1?"<div class='ui-datepicker-row-break'></div>":""):"");k+=C}b+=k}b+=c;t._keyEvent=false;return b},_generateMonthYearHeader:function(t,e,n,i,r,s,o,a){var l,c,u,h,f,d,p,m,g=this._get(t,"changeMonth"),_=this._get(t,"changeYear"),v=this._get(t,"showMonthAfterYear"),y="<div class='ui-datepicker-title'>",b="";if(s||!g){b+="<span class='ui-datepicker-month'>"+o[e]+"</span>"}else{l=i&&i.getFullYear()===n;c=r&&r.getFullYear()===n;b+="<select class='ui-datepicker-month' data-handler='selectMonth' data-event='change'>";for(u=0;
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200 * jQuery UI Scroll Parent 1.12.1 201 * http://jqueryui.com 202 * 203 * Copyright jQuery Foundation and other contributors 204 * Released under the MIT license. 205 * http://jquery.org/license 206 */ 207/*! 208 * jQuery UI Scroll Parent 1.12.1 209 * http://jqueryui.com 210 * 211 * Copyright jQuery Foundation and other contributors 212 * Released under the MIT license. 213 * http://jquery.org/license 214 */ 215(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./version"],t)}else{t(jQuery)}})(function(t){return t.fn.scrollParent=function(e){var n=this.css("position"),i=n==="absolute",r=e?/(auto|scroll|hidden)/:/(auto|scroll)/,s=this.parents().filter(function(){var e=t(this);if(i&&e.css("position")==="static"){return false}return r.test(e.css("overflow")+e.css("overflow-y")+e.css("overflow-x"))}).eq(0);return n==="fixed"||!s.length?t(this[0].ownerDocument||document):s}}); 216/*! 217 * jQuery UI Draggable 1.12.1 218 * http://jqueryui.com 219 * 220 * Copyright jQuery Foundation and other contributors 221 * Released under the MIT license. 222 * http://jquery.org/license 223 */ 224/*! 225 * jQuery UI Draggable 1.12.1 226 * http://jqueryui.com 227 * 228 * Copyright jQuery Foundation and other contributors 229 * Released under the MIT license. 230 * http://jquery.org/license 231 */ 232(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./mouse","../data","../plugin","../safe-active-element","../safe-blur","../scroll-parent","../version","../widget"],t)}else{t(jQuery)}})(function(t){t.widget("ui.draggable",t.ui.mouse,{version:"1.12.1",widgetEventPrefix:"drag",options:{addClasses:true,appendTo:"parent",axis:false,connectToSortable:false,containment:false,curs
232or:"auto",cursorAt:false,grid:false,handle:false,helper:"original",iframeFix:false,opacity:false,refreshPositions:false,revert:false,revertDuration:500,scope:"default",scroll:true,scrollSensitivity:20,scrollSpeed:20,snap:false,snapMode:"both",snapTolerance:20,stack:false,zIndex:false,drag:null,start:null,stop:null},_create:function(){if(this.options.helper==="original"){this._setPositionRelative()}if(this.options.addClasses){this._addClass("ui-draggable")}this._setHandleClassName();this._mouseInit()},_setOption:function(t,e){this._super(t,e);if(t==="handle"){this._removeHandleClassName();this._setHandleClassName()}},_destroy:function(){if((this.helper||this.element).is(".ui-draggable-dragging")){this.destroyOnClear=true;return}this._removeHandleClassName();this._mouseDestroy()},_mouseCapture:function(e){var n=this.options;if(this.helper||n.disabled||t(e.target).closest(".ui-resizable-handle").length>0){return false}this.handle=this._getHandle(e);if(!this.handle){return false}this._blurActiveElement(e);this._blockFrames(n.iframeFix===true?"iframe":n.iframeFix);return true},_blockFrames:function(e){this.iframeBlocks=this.document.find(e).map(function(){var e=t(this);return t("<div>").css("position","absolute").appendTo(e.parent()).outerWidth(e.outerWidth()).outerHeight(e.outerHeight()).offset(e.offset())[0]})},_unblockFrames:function(){if(this.iframeBlocks){this.iframeBlocks.remove();delete this.iframeBlocks}},_blurActiveElement:function(e){var n=t.ui.safeActiveElement(this.document[0]),i=t(e.target);if(i.closest(n).length){return}t.ui.safeBlur(n)},_mouseStart:function(e){var n=this.options;this.helper=this._createHelper(e);this._addClass(this.helper,"ui-draggable-dragging");this._cacheHelperProportions();if(t.ui.ddmanager){t.ui.ddmanager.current=this}this._cacheMargins();this.cssPosition=this.helper.css("position");this.scrollParent=this.helper.scrollParent(true);this.offsetParent=this.helper.offsetParent();this.hasFixedAncestor=this.helper.parents().filter(function(){return t(this).css("position")==="fixed"}).length>0;this.positionAbs=this.element.offset();this._refreshOffsets(e);this.originalPosition=this.position=this._generatePosition(e,false);this.originalPageX=e.pageX;this.originalPageY=e.pageY;n.cursorAt&&this._adjustOffsetFromHelper(n.cursorAt);this._setContainment();if(this._trigger("start",e)===false){this._clear();return false}this._cacheHelperProportions();if(t.ui.ddmanager&&!n.dropBehaviour){t.ui.ddmanager.prepareOffsets(this,e)}this._mouseDrag(e,true);if(t.ui.ddmanager){t.ui.ddmanager.dragStart(this,e)}return true},_refreshOffsets:function(t){this.offset={top:this.positionAbs.top-this.margins.top,left:this.positionAbs.left-this.margins.left,scroll:false,parent:this._getParentOffset(),relative:this._getRelativeOffset()};this.offset.click={left:t.pageX-this.offset.left,top:t.pageY-this.offset.top}},_mouseDrag:function(e,n){if(this.hasFixedAncestor){this.offset.parent=this._getParentOffset()}this.position=this._generatePosition(e,true);this.positionAbs=this._convertPositionTo("absolute");if(!n){var i=this._uiHash();if(this._trigger("drag",e,i)===false){this._mouseUp(new t.Event("mouseup",e));return false}this.position=i.position}this.helper[0].style.left=this.position.left+"px";this.helper[0].style.top=this.position.top+"px";if(t.ui.ddmanager){t.ui.ddmanager.drag(this,e)}return false},_mouseStop:function(e){var n=this,i=false;if(t.ui.ddmanager&&!this.options.dropBehaviour){i=t.ui.ddmanager.drop(this,e)}if(this.dropped){i=this.dropped;this.dropped=false}if(this.options.revert==="invalid"&&!i||this.options.revert==="valid"&&i||this.options.revert===true||t.isFunction(this.options.revert)&&this.options.revert.call(this.element,i)){t(this.helper).animate(this.originalPosition,parseInt(this.options.revertDuration,10),function(){if(n._trigger("stop",e)!==false){n._clear()}})}else{if(this._trigger("stop",e)!==false){this._clear()}}return false},_mouseUp:function(e){this._unblockFrames();if(t.ui.ddmanager){t.ui.ddmanager.dragStop(this,e)}if(this.handleElement.is(e.target)){this.element.trigger("focus")}return t.ui.mouse.prototype._mouseUp.call(this,e)},cancel:function(){if(this.helper.is(".ui-draggable-dragging")){this._mouseUp(new t.Event("mouseup",{target:this.element[0]}))}else{this._clear()}return this},_getHandle:function(e){return this.options.handle?!!t(e.target).closest(this.element.find(this.options.handle)).length:true},_setHandleClassName:function(){this.handleElement=this.options.handle?this.element.find(this.options.handle):this.element;this._addClass(this.handleElement,"ui-draggable-handle")},_removeHandleClassName:function(){this._removeClass(this.handleElement,"ui-draggable-handle")},_createHelper:function(e){var n=this.options,i=t.isFunction(n.helper),r=i?t(n.helper.apply(this.element[0],[e])):n.helper==="clone"?this.element.clone().removeAttr("id"):this.element;if(!r.parents("body").length){r.appendTo(n.appendTo==="parent"?this.element[0].parentNode:n.appendTo)}if(i&&r[0]===this.element[0]){this._setPositionRelative()}if(r[0]!==this.element[0]&&!/(fixed|absolute)/.test(r.css("position"))){r.css("position","absolute")}return r},_setPositionRelative:function(){if(!/^(?:r|a|f)/.test(this.element.css("position"))){this.element[0].style.position="relative"}}
232,_adjustOffsetFromHelper:function(e){if(typeof e==="string"){e=e.split(" ")}if(t.isArray(e)){e={left:+e[0],top:+e[1]||0}}if("left"in e){this.offset.click.left=e.left+this.margins.left}if("right"in e){this.offset.click.left=this.helperProportions.width-e.right+this.margins.left}if("top"in e){this.offset.click.top=e.top+this.margins.top}if("bottom"in e){this.offset.click.top=this.helperProportions.height-e.bottom+this.margins.top}},_isRootNode:function(t){return/(html|body)/i.test(t.tagName)||t===this.document[0]},_getParentOffset:function(){var e=this.offsetParent.offset(),n=this.document[0];if(this.cssPosition==="absolute"&&this.scrollParent[0]!==n&&t.contains(this.scrollParent[0],this.offsetParent[0])){e.left+=this.scrollParent.scrollLeft();e.top+=this.scrollParent.scrollTop()}if(this._isRootNode(this.offsetParent[0])){e={top:0,left:0}}return{top:e.top+(parseInt(this.offsetParent.css("borderTopWidth"),10)||0),left:e.left+(parseInt(this.offsetParent.css("borderLeftWidth"),10)||0)}},_getRelativeOffset:function(){if(this.cssPosition!=="relative"){return{top:0,left:0}}var t=this.element.position(),e=this._isRootNode(this.scrollParent[0]);return{top:t.top-(parseInt(this.helper.css("top"),10)||0)+(!e?this.scrollParent.scrollTop():0),left:t.left-(parseInt(this.helper.css("left"),10)||0)+(!e?this.scrollParent.scrollLeft():0)}},_cacheMargins:function(){this.margins={left:parseInt(this.element.css("marginLeft"),10)||0,top:parseInt(this.element.css("marginTop"),10)||0,right:parseInt(this.element.css("marginRight"),10)||0,bottom:parseInt(this.element.css("marginBottom"),10)||0}},_cacheHelperProportions:function(){this.helperProportions={width:this.helper.outerWidth(),height:this.helper.outerHeight()}},_setContainment:function(){var e,n,i,r=this.options,s=this.document[0];this.relativeContainer=null;if(!r.containment){this.containment=null;return}if(r.containment==="window"){this.containment=[t(window).scrollLeft()-this.offset.relative.left-this.offset.parent.left,t(window).scrollTop()-this.offset.relative.top-this.offset.parent.top,t(window).scrollLeft()+t(window).width()-this.helperProportions.width-this.margins.left,t(window).scrollTop()+(t(window).height()||s.body.parentNode.scrollHeight)-this.helperProportions.height-this.margins.top];return}if(r.containment==="document"){this.containment=[0,0,t(s).width()-this.helperProportions.width-this.margins.left,(t(s).height()||s.body.parentNode.scrollHeight)-this.helperProportions.height-this.margins.top];return}if(r.containment.constructor===Array){this.containment=r.containment;return}if(r.containment==="parent"){r.containment=this.helper[0].parentNode}n=t(r.containment);i=n[0];if(!i){return}e=/(scroll|auto)/.test(n.css("overflow"));this.containment=[(parseInt(n.css("borderLeftWidth"),10)||0)+(parseInt(n.css("paddingLeft"),10)||0),(parseInt(n.css("borderTopWidth"),10)||0)+(parseInt(n.css("paddingTop"),10)||0),(e?Math.max(i.scrollWidth,i.offsetWidth):i.offsetWidth)-(parseInt(n.css("borderRightWidth"),10)||0)-(parseInt(n.css("paddingRight"),10)||0)-this.helperProportions.width-this.margins.left-this.margins.right,(e?Math.max(i.scrollHeight,i.offsetHeight):i.offsetHeight)-(parseInt(n.css("borderBottomWidth"),10)||0)-(parseInt(n.css("paddingBottom"),10)||0)-this.helperProportions.height-this.margins.top-this.margins.bottom];this.relativeContainer=n},_convertPositionTo:function(t,e){if(!e){e=this.position}var n=t==="absolute"?1:-1,i=this._isRootNode(this.scrollParent[0]);return{top:e.top+this.offset.relative.top*n+this.offset.parent.top*n-(this.cssPosition==="fixed"?-this.offset.scroll.top:i?0:this.offset.scroll.top)*n,left:e.left+this.offset.relative.left*n+this.offset.parent.left*n-(this.cssPosition==="fixed"?-this.offset.scroll.left:i?0:this.offset.scroll.left)*n}},_generatePosition:function(t,e){var n,i,r,s,o=this.options,a=this._isRootNode(this.scrollParent[0]),l=t.pageX,c=t.pageY;if(!a||!this.offset.scroll){this.offset.scroll={top:this.scrollParent.scrollTop(),left:this.scrollParent.scrollLeft()}}if(e){if(this.containment){if(this.relativeContainer){i=this.relativeContainer.offset();n=[this.containment[0]+i.left,this.containment[1]+i.top,this.containment[2]+i.left,this.containment[3]+i.top]}else{n=this.containment}if(t.pageX-this.offset.click.left<n[0]){l=n[0]+this.offset.click.left}if(t.pageY-this.offset.click.top<n[1]){c=n[1]+this.offset.click.top}if(t.pageX-this.offset.click.left>n[2]){l=n[2]+this.offset.click.left}if(t.pageY-this.offset.click.top>n[3]){c=n[3]+this.offset.click.top}}if(o.grid){r=o.grid[1]?this.originalPageY+Math.round((c-this.originalPageY)/o.grid[1])*o.grid[1]:this.originalPageY;c=n?r-this.offset.click.top>=n[1]||r-this.offset.click.top>n[3]?r:r-this.offset.click.top>=n[1]?r-o.grid[1]:r+o.grid[1]:r;s=o.grid[0]?this.originalPageX+Math.round((l-this.originalPageX)
232/o.grid[0])*o.grid[0]:this.originalPageX;l=n?s-this.offset.click.left>=n[0]||s-this.offset.click.left>n[2]?s:s-this.offset.click.left>=n[0]?s-o.grid[0]:s+o.grid[0]:s}if(o.axis==="y"){l=this.originalPageX}if(o.axis==="x"){c=this.originalPageY}}return{top:c-this.offset.click.top-this.offset.relative.top-this.offset.parent.top+(this.cssPosition==="fixed"?-this.offset.scroll.top:a?0:this.offset.scroll.top),left:l-this.offset.click.left-this.offset.relative.left-this.offset.parent.left+(this.cssPosition==="fixed"?-this.offset.scroll.left:a?0:this.offset.scroll.left)}},_clear:function(){this._removeClass(this.helper,"ui-draggable-dragging");if(this.helper[0]!==this.element[0]&&!this.cancelHelperRemoval){this.helper.remove()}this.helper=null;this.cancelHelperRemoval=false;if(this.destroyOnClear){this.destroy()}},_trigger:function(e,n,i){i=i||this._uiHash();t.ui.plugin.call(this,e,[n,i,this],true);if(/^(drag|start|stop)/.test(e)){this.positionAbs=this._convertPositionTo("absolute");i.offset=this.positionAbs}return t.Widget.prototype._trigger.call(this,e,n,i)},plugins:{},_uiHash:function(){return{helper:this.helper,position:this.position,originalPosition:this.originalPosition,offset:this.positionAbs}}});t.ui.plugin.add("draggable","connectToSortable",{start:function(e,n,i){var r=t.extend({},n,{item:i.element});i.sortables=[];t(i.options.connectToSortable).each(function(){var n=t(this).sortable("instance");if(n&&!n.options.disabled){i.sortables.push(n);n.refreshPositions();n._trigger("activate",e,r)}})},stop:function(e,n,i){var r=t.extend({},n,{item:i.element});i.cancelHelperRemoval=false;t.each(i.sortables,function(){var t=this;if(t.isOver){t.isOver=0;i.cancelHelperRemoval=true;t.cancelHelperRemoval=false;t._storedCSS={position:t.placeholder.css("position"),top:t.placeholder.css("top"),left:t.placeholder.css("left")};t._mouseStop(e);t.options.helper=t.options._helper}else{t.cancelHelperRemoval=true;t._trigger("deactivate",e,r)}})},drag:function(e,n,i){t.each(i.sortables,function(){var r=false,s=this;s.positionAbs=i.positionAbs;s.helperProportions=i.helperProportions;s.offset.click=i.offset.click;if(s._intersectsWith(s.containerCache)){r=true;t.each(i.sortables,function(){this.positionAbs=i.positionAbs;this.helperProportions=i.helperProportions;this.offset.click=i.offset.click;if(this!==s&&this._intersectsWith(this.containerCache)&&t.contains(s.element[0],this.element[0])){r=false}return r})}if(r){if(!s.isOver){s.isOver=1;i._parent=n.helper.parent();s.currentItem=n.helper.appendTo(s.element).data("ui-sortable-item",true);s.options._helper=s.options.helper;s.options.helper=function(){return n.helper[0]};e.target=s.currentItem[0];s._mouseCapture(e,true);s._mouseStart(e,true,true);s.offset.click.top=i.offset.click.top;s.offset.click.left=i.offset.click.left;s.offset.parent.left-=i.offset.parent.left-s.offset.parent.left;s.offset.parent.top-=i.offset.parent.top-s.offset.parent.top;i._trigger("toSortable",e);i.dropped=s.element;t.each(i.sortables,function(){this.refreshPositions()});i.currentItem=i.element;s.fromOutside=i}if(s.currentItem){s._mouseDrag(e);n.position=s.position}}else{if(s.isOver){s.isOver=0;s.cancelHelperRemoval=true;s.options._revert=s.options.revert;s.options.revert=false;s._trigger("out",e,s._uiHash(s));s._mouseStop(e,true);s.options.revert=s.options._revert;s.options.helper=s.options._helper;if(s.placeholder){s.placeholder.remove()}n.helper.appendTo(i._parent);i._refreshOffsets(e);n.position=i._generatePosition(e,true);i._trigger("fromSortable",e);i.dropped=false;t.each(i.sortables,function(){this.refreshPositions()})}}})}});t.ui.plugin.add("draggable","cursor",{start:function(e,n,i){var r=t("body"),s=i.options;if(r.css("cursor")){s._cursor=r.css("cursor")}r.css("cursor",s.cursor)},stop:function(e,n,i){var r=i.options;if(r._cursor){t("body").css("cursor",r._cursor)}}});t.ui.plugin.add("draggable","opacity",{start:function(e,n,i){var r=t(n.helper),s=i.options;if(r.css("opacity")){s._opacity=r.css("opacity")}r.css("opacity",s.opacity)},stop:function(e,n,i){var r=i.options;if(r._opacity){t(n.helper).css("opacity",r._opacity)}}});t.ui.plugin.add("draggable","scroll",{start:function(t,e,n){if(!n.scrollParentNotHidden){n.scrollParentNotHidden=n.helper.scrollParent(false)}if(n.scrollParentNotHidden[0]!==n.document[0]&&n.scrollParentNotHidden[0].tagName!=="HTML"){n.overflowOffset=n.scrollParentNotHidden.offset()}},drag:function(e,n,i){var r=i.options,s=false,o=i.scrollParentNotHidden[0],a=i.document[0];if(o!==a&&o.tagName!=="HTML"){if(!r.axis||r.axis!=="x"){if(i.overflowOffset.top+o.offsetHeight-e.pageY<r.scrollSensitivity){o.scrollTop=s=o.scrollTop+r.scrollSpeed}else if(e.pageY-i.overflowOffset.top<r.scrollSensitivity){o.scrollTop=s=o.scrollTop-r.scrollSpeed}}if(!r.axis||r.axis!=="y"){if(i.overflowOffset.left+o.offsetWidth-e.pageX<r.scrollSensitivity){o.scrollLeft=s=o.scrollLeft+r.scrollSpeed}else if(e.pageX-i.overflowOffset.left<r.scrollSensitivity){o.scrollLeft=s=o.scrollLeft-r.scrollSpeed}}}
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234 * jQuery UI Disable Selection 1.12.1 235 * http://jqueryui.com 236 * 237 * Copyright jQuery Foundation and other contributors 238 * Released under the MIT license. 239 * http://jquery.org/license 240 */ 241/*! 242 * jQuery UI Disable Selection 1.12.1 243 * http://jqueryui.com 244 * 245 * Copyright jQuery Foundation and other contributors 246 * Released under the MIT license. 247 * http://jquery.org/license 248 */ 249(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./version"],t)}else{t(jQuery)}})(function(t){return t.fn.extend({disableSelection:function(){var t="onselectstart"in document.createElement("div")?"selectstart":"mousedown";return function(){return this.on(t+".ui-disableSelection",function(t){t.preventDefault()})}}(),enableSelection:function(){return this.off(".ui-disableSelection")}})}); 250/*! 251 * jQuery UI Resizable 1.12.1 252 * http://jqueryui.com 253 * 254 * Copyright jQuery Foundation and other contributors 255 * Released under the MIT license. 256 * http://jquery.org/license 257 */ 258/*! 259 * jQuery UI Resizable 1.12.1 260 * http://jqueryui.com 261 * 262 * Copyright jQuery Foundation and other contributors 263 * Released under the MIT license. 264 * http://jquery.org/license 265 */ 266(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./mouse","../disable-selection","../plugin","../version","../widget"],t)}else{t(jQuery)}})(function(t){t.widget("ui.resizable",t.ui.mouse,{version:"1.12.1",widgetEventPrefix:"resize",options:{alsoResize:false,animate:false,animateDuration:"slow",animateEasing:"swing",aspectRatio:false,autoHide:false,classes:{"ui-resizable-se":"ui-icon ui-icon-gripsmall-diagonal-se"},containment:false,ghost:false,grid:false,handles:"e,s,se",helper:false,maxHeight:null,maxWidth:null,minHeight:10,minWidth:10,zIndex:90,resize:null,start:null,stop:null},_num:function(t){return parseFloat(t)||0},_isNumber:function(t){return!isNaN(parseFloat(t))},_hasScroll:function(e,n){if(t(e).css("overflow")==="hidden"){return false}var i=n&&n==="left"?"scrollLeft":"scrollTop",r=false;if(e[i]>0){return true}e[i]=1;r=e[i]>0;e[i]=0;return r},_create:function(){var e,n=this.options,i=this;this._addClass("ui-resizable");t.extend(this,{_aspectRatio:!!n.aspectRatio,aspectRatio:n.aspectRatio,originalElement:this.element,_proportionallyResizeElements:[],_helper:n.helper||n.ghost||n.animate?n.helper||"ui-resizable-helper":null});if(this.element[0].nodeName.match(/^(canvas|textarea|input|select|button|img)$/i)){this.element.wrap(t("<div class='ui-wrapper' style='overflow: hidden;'></div>").css({position:this.element.css("position"),width:this.element.outerWidth(),height:this.element.outerHeight(),top:this.element.css("top"),left:this.element.css("left")}));this.element=this.element.parent().data("ui-resizable",this.element.resizable("instance"));this.elementIsWrapper=true;e={marginTop:this.originalElement.css("marginTop"),marginRight:this.originalElement.css("marginRight"),marginBottom:this.originalElement.css("marginBottom"),marginLeft:this.originalElement.css("marginLeft")};this.element.css(e);this.originalElement.css("margin",0);this.originalResizeStyle=this.originalElement.css("resize");this.originalElement.css("resize","none");this._proportionallyResizeElements.push(this.originalElement.css({position:"static",zoom:1,display:"block"}));this.originalElement.css(e);this._proportionallyResize()}this._setupHandles();if(n.autoHide){t(this.element).on("mouseenter",function(){if(n.disabled){return}i._removeClass("ui-resizable-autohide");i._handles.show()}).on("mouseleave",function(){if(n.disabled){return}if(!i.resizing){i._addClass("ui-resizable-autohide");i._handles.hide()}})}this._mouseInit()},_destroy:function(){this._mouseDestroy();var e,n=function(e){t(e).removeData("resizable").removeData("ui-resizable").off(".resizable").find(".ui-resizable-handle").remove()};if(this.elementIsWrapper){n(this.element);e=this.element;this.originalElement.css({position:e.css("position"),width:e.outerWidth(),height:e.outerHeight(),top:e.css("top"),left:e.css("left")}).insertAfter(e);e.remove()}this.originalElement.css("resize",this.originalResizeStyle);n(this.originalElement);return this},_setOption:function(t,e){this._super(t,e);switch(t){case"handles":this._removeHandles();this._setupHandles();break;default:break}},_setupHandles:function(){var e=this.options,n,i,r,s,o,a=this;this.handles=e.handles||(!t(".ui-resizable-handle",this.element).length?"e,s,se":{n:".ui-resizable-n",e:".ui-resizable-e",s:".ui-resizable-s",w:".ui-resizable-w",se:".ui-resizable-se",sw:".ui-resizable-sw",ne:".ui-resizable-ne",nw:".ui-resizable-nw"});this._handles=t();if(this.handles.constructor===String){if(this.handles==="all"){this.handles="n,e,s,w,se,sw,ne,nw"}r=this.handles.split(",");this.handles={};for(i=0;i<r.length;i++){n=t.trim(r[i]);s="ui-resizable-"+n;o=t("<div>");this._addClass(o,"ui-resizable-handle "+s);o.css({zIndex:e.zIndex});this.handles[n]=".ui-resizable-"+n;this.element.append(o)}}this._renderAxis=function(e){var n,i,r,s;e=e||this.element;
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e=0,n=[],i=[t.css("borderTopWidth"),t.css("borderRightWidth"),t.css("borderBottomWidth"),t.css("borderLeftWidth")],r=[t.css("paddingTop"),t.css("paddingRight"),t.css("paddingBottom"),t.css("paddingLeft")];for(;e<4;e++){n[e]=parseFloat(i[e])||0;n[e]+=parseFloat(r[e])||0}return{height:n[0]+n[2],width:n[1]+n[3]}},_proportionallyResize:function(){if(!this._proportionallyResizeElements.length){return}var t,e=0,n=this.helper||this.element;for(;e<this._proportionallyResizeElements.length;e++){t=this._proportionallyResizeElements[e];if(!this.outerDimensions){this.outerDimensions=this._getPaddingPlusBorderDimensions(t)}t.css({height:n.height()-this.outerDimensions.height||0,width:n.width()-this.outerDimensions.width||0})}},_renderProxy:function(){var e=this.element,n=this.options;this.elementOffset=e.offset();if(this._helper){this.helper=this.helper||t("<div 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t.extend(this._change.n.apply(this,arguments),this._change.e.apply(this,[e,n,i]))},nw:function(e,n,i){return t.extend(this._change.n.apply(this,arguments),this._change.w.apply(this,[e,n,i]))}},_propagate:function(e,n){t.ui.plugin.call(this,e,[n,this.ui()]);e!=="resize"&&this._trigger(e,n,this.ui())},plugins:{},ui:function(){return{originalElement:this.originalElement,element:this.element,helper:this.helper,position:this.position,size:this.size,originalSize:this.originalSize,originalPosition:this.originalPosition}}});t.ui.plugin.add("resizable","animate",{stop:function(e){var 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t=this._focusedElement;if(!t){t=this.element.find("[autofocus]")}if(!t.length){t=this.element.find(":tabbable")}if(!t.length){t=this.uiDialogButtonPane.find(":tabbable")}if(!t.length){t=this.uiDialogTitlebarClose.filter(":tabbable")}if(!t.length){t=this.uiDialog}t.eq(0).trigger("focus")},_keepFocus:function(e){function n(){var e=t.ui.safeActiveElement(this.document[0]),n=this.uiDialog[0]===e||t.contains(this.uiDialog[0],e);if(!n){this._focusTabbable()}}e.preventDefault();n.call(this);this._delay(n)},_createWrapper:function(){this.uiDialog=t("<div>").hide().attr({tabIndex:-1,role:"dialog"}).appendTo(this._appendTo());this._addClass(this.uiDialog,"ui-dialog","ui-widget ui-widget-content ui-front");this._on(this.uiDialog,{keydown:function(e){if(this.options.closeOnEscape&&!e.isDefaultPrevented()&&e.keyCode&&e.keyCode===t.ui.keyCode.ESCAPE){e.preventDefault();this.close(e);return}if(e.keyCode!==t.ui.keyCode.TAB||e.isDefaultPrevented()){return}var n=this.uiDialog.find(":tabbable"),i=n.filter(":first"),r=n.filter(":last");if((e.target===r[0]||e.target===this.uiDialog[0])&&!e.shiftKey){this._delay(function(){i.trigger("focus")});e.preventDefault()}else if((e.target===i[0]||e.target===this.uiDialog[0])&&e.shiftKey){this._delay(function(){r.trigger("focus")});e.preventDefault()}},mousedown:function(t){if(this._moveToTop(t)){this._focusTabbable()}}});if(!this.element.find("[aria-describedby]").length){this.uiDialog.attr({"aria-describedby":this.element.uniqueId().attr("id")})}},_createTitlebar:function(){var e;this.uiDialogTitlebar=t("<div>");this._addClass(this.uiDialogTitlebar,"ui-dialog-titlebar","ui-widget-header ui-helper-clearfix");this._on(this.uiDialogTitlebar,{mousedown:function(e){if(!t(e.target).closest(".ui-dialog-titlebar-close")){this.uiDialog.trigger("focus")}}});this.uiDialogTitlebarClose=t("<button type='button'></button>").button({label:t("<a>").text(this.options.closeText).html(),icon:"ui-icon-closethick",showLabel:false}).appendTo(this.uiDialogTitlebar);this._addClass(this.uiDialogTitlebarClose,"ui-dialog-titlebar-close");this._on(this.uiDialogTitlebarClose,{click:function(t){t.preventDefault();this.close(t)}});e=t("<span>").uniqueId().prependTo(this.uiDialogTitlebar);this._addClass(e,"ui-dialog-title");this._title(e);
355this.uiDialogTitlebar.prependTo(this.uiDialog);this.uiDialog.attr({"aria-labelledby":e.attr("id")})},_title:function(t){if(this.options.title){t.text(this.options.title)}else{t.html(" ")}},_createButtonPane:function(){this.uiDialogButtonPane=t("<div>");this._addClass(this.uiDialogButtonPane,"ui-dialog-buttonpane","ui-widget-content ui-helper-clearfix");this.uiButtonSet=t("<div>").appendTo(this.uiDialogButtonPane);this._addClass(this.uiButtonSet,"ui-dialog-buttonset");this._createButtons()},_createButtons:function(){var e=this,n=this.options.buttons;this.uiDialogButtonPane.remove();this.uiButtonSet.empty();if(t.isEmptyObject(n)||t.isArray(n)&&!n.length){this._removeClass(this.uiDialog,"ui-dialog-buttons");return}t.each(n,function(n,i){var r,s;i=t.isFunction(i)?{click:i,text:n}:i;i=t.extend({type:"button"},i);r=i.click;s={icon:i.icon,iconPosition:i.iconPosition,showLabel:i.showLabel,icons:i.icons,text:i.text};delete i.click;delete i.icon;delete i.iconPosition;delete i.showLabel;delete i.icons;if(typeof i.text==="boolean"){delete i.text}t("<button></button>",i).button(s).appendTo(e.uiButtonSet).on("click",function(){r.apply(e.element[0],arguments)})});this._addClass(this.uiDialog,"ui-dialog-buttons");this.uiDialogButtonPane.appendTo(this.uiDialog)},_makeDraggable:function(){var e=this,n=this.options;function i(t){return{position:t.position,offset:t.offset}}this.uiDialog.draggable({cancel:".ui-dialog-content, .ui-dialog-titlebar-close",handle:".ui-dialog-titlebar",containment:"document",start:function(n,r){e._addClass(t(this),"ui-dialog-dragging");e._blockFrames();e._trigger("dragStart",n,i(r))},drag:function(t,n){e._trigger("drag",t,i(n))},stop:function(r,s){var o=s.offset.left-e.document.scrollLeft(),a=s.offset.top-e.document.scrollTop();n.position={my:"left top",at:"left"+(o>=0?"+":"")+o+" "+"top"+(a>=0?"+":"")+a,of:e.window};e._removeClass(t(this),"ui-dialog-dragging");e._unblockFrames();e._trigger("dragStop",r,i(s))}})},_makeResizable:function(){var e=this,n=this.options,i=n.resizable,r=this.uiDialog.css("position"),s=typeof i==="string"?i:"n,e,s,w,se,sw,ne,nw";function o(t){return{originalPosition:t.originalPosition,originalSize:t.originalSize,position:t.position,size:t.size}}this.uiDialog.resizable({cancel:".ui-dialog-content",containment:"document",alsoResize:this.element,maxWidth:n.maxWidth,maxHeight:n.maxHeight,minWidth:n.minWidth,minHeight:this._minHeight(),handles:s,start:function(n,i){e._addClass(t(this),"ui-dialog-resizing");e._blockFrames();e._trigger("resizeStart",n,o(i))},resize:function(t,n){e._trigger("resize",t,o(n))},stop:function(i,r){var s=e.uiDialog.offset(),a=s.left-e.document.scrollLeft(),l=s.top-e.document.scrollTop();n.height=e.uiDialog.height();n.width=e.uiDialog.width();n.position={my:"left top",at:"left"+(a>=0?"+":"")+a+" "+"top"+(l>=0?"+":"")+l,of:e.window};e._removeClass(t(this),"ui-dialog-resizing");e._unblockFrames();e._trigger("resizeStop",i,o(r))}}).css("position",r)},_trackFocus:function(){this._on(this.widget(),{focusin:function(e){this._makeFocusTarget();this._focusedElement=t(e.target)}})},_makeFocusTarget:function(){this._untrackInstance();this._trackingInstances().unshift(this)},_untrackInstance:function(){var e=this._trackingInstances(),n=t.inArray(this,e);if(n!==-1){e.splice(n,1)}},_trackingInstances:function(){var t=this.document.data("ui-dialog-instances");if(!t){t=[];this.document.data("ui-dialog-instances",t)}return t},_minHeight:function(){var t=this.options;return t.height==="auto"?t.minHeight:Math.min(t.minHeight,t.height)},_position:function(){var t=this.uiDialog.is(":visible");if(!t){this.uiDialog.show()}this.uiDialog.position(this.options.position);if(!t){this.uiDialog.hide()}},_setOptions:function(e){var n=this,i=false,r={};t.each(e,function(t,e){n._setOption(t,e);if(t in n.sizeRelatedOptions){i=true}if(t in n.resizableRelatedOptions){r[t]=e}});if(i){this._size();this._position()}if(this.uiDialog.is(":data(ui-resizable)")){this.uiDialog.resizable("option",r)}},_setOption:function(e,n){var i,r,s=this.uiDialog;if(e==="disabled"){return}this._super(e,n);if(e==="appendTo"){this.uiDialog.appendTo(this._appendTo())}if(e==="buttons"){this._createButtons()}if(e==="closeText"){this.uiDialogTitlebarClose.button({label:t("<a>").text(""+this.options.closeText).html()})}if(e==="draggable"){i=s.is(":data(ui-draggable)");if(i&&!n){s.draggable("destroy")}if(!i&&n){this._makeDraggable()}}if(e==="position"){this._position()}if(e==="resizable"){r=s.is(":data(ui-resizable)");if(r&&!n){s.resizable("destroy")}
355if(r&&typeof n==="string"){s.resizable("option","handles",n)}if(!r&&n!==false){this._makeResizable()}}if(e==="title"){this._title(this.uiDialogTitlebar.find(".ui-dialog-title"))}},_size:function(){var t,e,n,i=this.options;this.element.show().css({width:"auto",minHeight:0,maxHeight:"none",height:0});if(i.minWidth>i.width){i.width=i.minWidth}t=this.uiDialog.css({height:"auto",width:i.width}).outerHeight();e=Math.max(0,i.minHeight-t);n=typeof i.maxHeight==="number"?Math.max(0,i.maxHeight-t):"none";if(i.height==="auto"){this.element.css({minHeight:e,maxHeight:n,height:"auto"})}else{this.element.height(Math.max(0,i.height-t))}if(this.uiDialog.is(":data(ui-resizable)")){this.uiDialog.resizable("option","minHeight",this._minHeight())}},_blockFrames:function(){this.iframeBlocks=this.document.find("iframe").map(function(){var e=t(this);return t("<div>").css({position:"absolute",width:e.outerWidth(),height:e.outerHeight()}).appendTo(e.parent()).offset(e.offset())[0]})},_unblockFrames:function(){if(this.iframeBlocks){this.iframeBlocks.remove();delete this.iframeBlocks}},_allowInteraction:function(e){if(t(e.target).closest(".ui-dialog").length){return true}return!!t(e.target).closest(".ui-datepicker").length},_createOverlay:function(){if(!this.options.modal){return}var e=true;this._delay(function(){e=false});if(!this.document.data("ui-dialog-overlays")){this._on(this.document,{focusin:function(t){if(e){return}if(!this._allowInteraction(t)){t.preventDefault();this._trackingInstances()[0]._focusTabbable()}}})}this.overlay=t("<div>").appendTo(this._appendTo());this._addClass(this.overlay,null,"ui-widget-overlay ui-front");this._on(this.overlay,{mousedown:"_keepFocus"});this.document.data("ui-dialog-overlays",(this.document.data("ui-dialog-overlays")||0)+1)},_destroyOverlay:function(){if(!this.options.modal){return}if(this.overlay){var t=this.document.data("ui-dialog-overlays")-1;if(!t){this._off(this.document,"focusin");this.document.removeData("ui-dialog-overlays")}else{this.document.data("ui-dialog-overlays",t)}this.overlay.remove();this.overlay=null}}});if(t.uiBackCompat!==false){t.widget("ui.dialog",t.ui.dialog,{options:{dialogClass:""},_createWrapper:function(){this._super();this.uiDialog.addClass(this.options.dialogClass)},_setOption:function(t,e){if(t==="dialogClass"){this.uiDialog.removeClass(this.options.dialogClass).addClass(e)}this._superApply(arguments)}})}return t.ui.dialog}); 356/*! 357 * jQuery UI Sortable 1.12.1 358 * http://jqueryui.com 359 * 360 * Copyright jQuery Foundation and other contributors 361 * Released under the MIT license. 362 * http://jquery.org/license 363 */ 364/*! 365 * jQuery UI Sortable 1.12.1 366 * http://jqueryui.com 367 * 368 * Copyright jQuery Foundation and other contributors 369 * Released under the MIT license. 370 * http://jquery.org/license 371 */ 372(function(t){if(typeof define==="function"&&define.amd){define(["jquery","./mouse","../data","../ie","../scroll-parent","../version","../widget"],t)}else{t(jQuery)}})(function(t){return t.widget("ui.sortable",t.ui.mouse,{version:"1.12.1",widgetEventPrefix:"sort",ready:false,options:{appendTo:"parent",axis:false,connectWith:false,containment:false,cursor:"auto",cursorAt:false,dropOnEmpty:true,forcePlaceholderSize:false,forceHelperSize:false,grid:false,handle:false,helper:"original",items:"> *",opacity:false,placeholder:false,revert:false,scroll:true,scrollSensitivity:20,scrollSpeed:20,scope:"default",tolerance:"intersect",zIndex:1e3,activate:null,beforeStop:null,change:null,deactivate:null,out:null,over:null,receive:null,remove:null,sort:null,start:null,stop:null,update:null},_isOverAxis:function(t,e,n){return t>=e&&t<e+n},_isFloating:function(t){return/left|right/.test(t.css("float"))||/inline|table-cell/.test(t.css("display"))},_create:function(){this.containerCache={};this._addClass("ui-sortable");this.refresh();this.offset=this.element.offset();this._mouseInit();this._setHandleClassName();this.ready=true},_setOption:function(t,e){this._super(t,e);if(t==="handle"){this._setHandleClassName()}},_setHandleClassName:function(){var e=this;this._removeClass(this.element.find(".ui-sortable-handle"),"ui-sortable-handle");t.each(this.items,function(){e._addClass(this.instance.options.handle?this.item.find(this.instance.options.handle):this.item,"ui-sortable-handle")}
372)},_destroy:function(){this._mouseDestroy();for(var t=this.items.length-1;t>=0;t--){this.items[t].item.removeData(this.widgetName+"-item")}return this},_mouseCapture:function(e,n){var i=null,r=false,s=this;if(this.reverting){return false}if(this.options.disabled||this.options.type==="static"){return false}this._refreshItems(e);t(e.target).parents().each(function(){if(t.data(this,s.widgetName+"-item")===s){i=t(this);return false}});if(t.data(e.target,s.widgetName+"-item")===s){i=t(e.target)}if(!i){return false}if(this.options.handle&&!n){t(this.options.handle,i).find("*").addBack().each(function(){if(this===e.target){r=true}});if(!r){return false}}this.currentItem=i;this._removeCurrentsFromItems();return true},_mouseStart:function(e,n,i){var r,s,o=this.options;this.currentContainer=this;this.refreshPositions();this.helper=this._createHelper(e);this._cacheHelperProportions();this._cacheMargins();this.scrollParent=this.helper.scrollParent();this.offset=this.currentItem.offset();this.offset={top:this.offset.top-this.margins.top,left:this.offset.left-this.margins.left};t.extend(this.offset,{click:{left:e.pageX-this.offset.left,top:e.pageY-this.offset.top},parent:this._getParentOffset(),relative:this._getRelativeOffset()});this.helper.css("position","absolute");this.cssPosition=this.helper.css("position");this.originalPosition=this._generatePosition(e);this.originalPageX=e.pageX;this.originalPageY=e.pageY;o.cursorAt&&this._adjustOffsetFromHelper(o.cursorAt);this.domPosition={prev:this.currentItem.prev()[0],parent:this.currentItem.parent()[0]};if(this.helper[0]!==this.currentItem[0]){this.currentItem.hide()}this._createPlaceholder();if(o.containment){this._setContainment()}if(o.cursor&&o.cursor!=="auto"){s=this.document.find("body");this.storedCursor=s.css("cursor");s.css("cursor",o.cursor);this.storedStylesheet=t("<style>*{ cursor: "+o.cursor+" !important; }</style>").appendTo(s)}if(o.opacity){if(this.helper.css("opacity")){this._storedOpacity=this.helper.css("opacity")}this.helper.css("opacity",o.opacity)}
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n,i,r,s,o=this.options,a=false;this.position=this._generatePosition(e);this.positionAbs=this._convertPositionTo("absolute");if(!this.lastPositionAbs){this.lastPositionAbs=this.positionAbs}if(this.options.scroll){if(this.scrollParent[0]!==this.document[0]&&this.scrollParent[0].tagName!=="HTML"){if(this.overflowOffset.top+this.scrollParent[0].offsetHeight-e.pageY<o.scrollSensitivity){this.scrollParent[0].scrollTop=a=this.scrollParent[0].scrollTop+o.scrollSpeed}else if(e.pageY-this.overflowOffset.top<o.scrollSensitivity){this.scrollParent[0].scrollTop=a=this.scrollParent[0].scrollTop-o.scrollSpeed}if(this.overflowOffset.left+this.scrollParent[0].offsetWidth-e.pageX<o.scrollSensitivity){this.scrollParent[0].scrollLeft=a=this.scrollParent[0].scrollLeft+o.scrollSpeed}else 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false},_mouseStop:function(e,n){if(!e){return}if(t.ui.ddmanager&&!this.options.dropBehaviour){t.ui.ddmanager.drop(this,e)}if(this.options.revert){var i=this,r=this.placeholder.offset(),s=this.options.axis,o={};if(!s||s==="x"){o.left=r.left-this.offset.parent.left-this.margins.left+(this.offsetParent[0]===this.document[0].body?0:this.offsetParent[0].scrollLeft)}if(!s||s==="y"){o.top=r.top-this.offset.parent.top-this.margins.top+(this.offsetParent[0]===this.document[0].body?0:this.offsetParent[0].scrollTop)}this.reverting=true;t(this.helper).animate(o,parseInt(this.options.revert,10)||500,function(){i._clear(e)})}else{this._clear(e,n)}return false},cancel:function(){if(this.dragging){this._mouseUp(new t.Event("mouseup",{target:null}));if(this.options.helper==="original"){this.currentItem.css(this._storedCSS);this._removeClass(this.currentItem,"ui-sortable-helper")}else{this.currentItem.show()}for(var e=this.containers.length-1;e>=0;e--){this.containers[e]._trigger("deactivate",null,this._uiHash(this));if(this.containers[e].containerCache.over){this.containers[e]._trigger("out",null,this._uiHash(this));this.containers[e].containerCache.over=0}}}if(this.placeholder){if(this.placeholder[0].parentNode){this.placeholder[0].parentNode.removeChild(this.placeholder[0])}if(this.options.helper!=="original"&&this.helper&&this.helper[0].parentNode){this.helper.remove()}t.extend(this,{helper:null,dragging:false,reverting:false,_noFinalSort:null});if(this.domPosition.prev){t(this.domPosition.prev).after(this.currentItem)}else{t(this.domPosition.parent).prepend(this.currentItem)}}return this},serialize:function(e){var n=this._getItemsAsjQuery(e&&e.connected),i=[];e=e||{};t(n).each(function(){var n=(t(e.item||this).attr(e.attribute||"id")||"").match(e.expression||/(.+)[\-=_](.+)/);if(n){i.push((e.key||n[1]+"[]")+"="+(e.key&&e.expression?n[1]:n[2]))}});if(!i.length&&e.key){i.push(e.key+"=")}
372return i.join("&")},toArray:function(e){var n=this._getItemsAsjQuery(e&&e.connected),i=[];e=e||{};n.each(function(){i.push(t(e.item||this).attr(e.attribute||"id")||"")});return i},_intersectsWith:function(t){var e=this.positionAbs.left,n=e+this.helperProportions.width,i=this.positionAbs.top,r=i+this.helperProportions.height,s=t.left,o=s+t.width,a=t.top,l=a+t.height,c=this.offset.click.top,u=this.offset.click.left,h=this.options.axis==="x"||i+c>a&&i+c<l,f=this.options.axis==="y"||e+u>s&&e+u<o,d=h&&f;if(this.options.tolerance==="pointer"||this.options.forcePointerForContainers||this.options.tolerance!=="pointer"&&this.helperProportions[this.floating?"width":"height"]>t[this.floating?"width":"height"]){return d}else{return s<e+this.helperProportions.width/2&&n-this.helperProportions.width/2<o&&a<i+this.helperProportions.height/2&&r-this.helperProportions.height/2<l}},_intersectsWithPointer:function(t){var e,n,i=this.options.axis==="x"||this._isOverAxis(this.positionAbs.top+this.offset.click.top,t.top,t.height),r=this.options.axis==="y"||this._isOverAxis(this.positionAbs.left+this.offset.click.left,t.left,t.width),s=i&&r;if(!s){return false}e=this._getDragVerticalDirection();n=this._getDragHorizontalDirection();return this.floating?n==="right"||e==="down"?2:1:e&&(e==="down"?2:1)},_intersectsWithSides:function(t){var e=this._isOverAxis(this.positionAbs.top+this.offset.click.top,t.top+t.height/2,t.height),n=this._isOverAxis(this.positionAbs.left+this.offset.click.left,t.left+t.width/2,t.width),i=this._getDragVerticalDirection(),r=this._getDragHorizontalDirection();if(this.floating&&r){return r==="right"&&n||r==="left"&&!n}else{return i&&(i==="down"&&e||i==="up"&&!e)}},_getDragVerticalDirection:function(){var t=this.positionAbs.top-this.lastPositionAbs.top;return t!==0&&(t>0?"down":"up")},_getDragHorizontalDirection:function(){var t=this.positionAbs.left-this.lastPositionAbs.left;return t!==0&&(t>0?"right":"left")},refresh:function(t){this._refreshItems(t);this._setHandleClassName();this.refreshPositions();return this},_connectWith:function(){var t=this.options;return t.connectWith.constructor===String?[t.connectWith]:t.connectWith},_getItemsAsjQuery:function(e){var n,i,r,s,o=[],a=[],l=this._connectWith();if(l&&e){for(n=l.length-1;n>=0;n--){r=t(l[n],this.document[0]);for(i=r.length-1;i>=0;i--){s=t.data(r[i],this.widgetFullName);if(s&&s!==this&&!s.options.disabled){a.push([t.isFunction(s.options.items)?s.options.items.call(s.element):t(s.options.items,s.element).not(".ui-sortable-helper").not(".ui-sortable-placeholder"),s])}}}}a.push([t.isFunction(this.options.items)?this.options.items.call(this.element,null,{options:this.options,item:this.currentItem}):t(this.options.items,this.element).not(".ui-sortable-helper").not(".ui-sortable-placeholder"),this]);function c(){o.push(this)}for(n=a.length-1;n>=0;n--){a[n][0].each(c)}return t(o)},_removeCurrentsFromItems:function(){var e=this.currentItem.find(":data("+this.widgetName+"-item)");this.items=t.grep(this.items,function(t){for(var n=0;n<e.length;n++){if(e[n]===t.item[0]){return false}}return true})},_refreshItems:function(e){this.items=[];this.containers=[this];var n,i,r,s,o,a,l,c,u=this.items,h=[[t.isFunction(this.options.items)?this.options.items.call(this.element[0],e,{item:this.currentItem}):t(this.options.items,this.element),this]],f=this._connectWith();if(f&&this.ready){for(n=f.length-1;n>=0;n--){r=t(f[n],this.document[0]);for(i=r.length-1;i>=0;i--){s=t.data(r[i],this.widgetFullName);if(s&&s!==this&&!s.options.disabled){h.push([t.isFunction(s.options.items)?s.options.items.call(s.element[0],e,{item:this.currentItem}):t(s.options.items,s.element),s]);this.containers.push(s)}}}}for(n=h.length-1;n>=0;n--){o=h[n][1];a=h[n][0];for(i=0,c=a.length;i<c;i++){l=t(a[i]);l.data(this.widgetName+"-item",o);u.push({item:l,instance:o,width:0,height:0,left:0,top:0})}}},refreshPositions:function(e){this.floating=this.items.length?this.options.axis==="x"||this._isFloating(this.items[0].item):false;if(this.offsetParent&&this.helper){this.offset.parent=this._getParentOffset()}var n,i,r,s;for(n=this.items.length-1;n>=0;n--){i=this.items[n];if(i.instance!==this.currentContainer&&this.currentContainer&&i.item[0]!==this.currentItem[0]){continue}r=this.options.toleranceElement?t(this.options.toleranceElement,i.item):i.item;if(!e){i.width=r.outerWidth();i.height=r.outerHeight()}s=r.offset();i.left=s.left;i.top=s.top}
372if(this.options.custom&&this.options.custom.refreshContainers){this.options.custom.refreshContainers.call(this)}else{for(n=this.containers.length-1;n>=0;n--){s=this.containers[n].element.offset();this.containers[n].containerCache.left=s.left;this.containers[n].containerCache.top=s.top;this.containers[n].containerCache.width=this.containers[n].element.outerWidth();this.containers[n].containerCache.height=this.containers[n].element.outerHeight()}}return this},_createPlaceholder:function(e){e=e||this;var n,i=e.options;if(!i.placeholder||i.placeholder.constructor===String){n=i.placeholder;i.placeholder={element:function(){var i=e.currentItem[0].nodeName.toLowerCase(),r=t("<"+i+">",e.document[0]);e._addClass(r,"ui-sortable-placeholder",n||e.currentItem[0].className)._removeClass(r,"ui-sortable-helper");if(i==="tbody"){e._createTrPlaceholder(e.currentItem.find("tr").eq(0),t("<tr>",e.document[0]).appendTo(r))}else if(i==="tr"){e._createTrPlaceholder(e.currentItem,r)}else if(i==="img"){r.attr("src",e.currentItem.attr("src"))}if(!n){r.css("visibility","hidden")}return r},update:function(t,r){if(n&&!i.forcePlaceholderSize){return}
372if(!r.height()){r.height(e.currentItem.innerHeight()-parseInt(e.currentItem.css("paddingTop")||0,10)-parseInt(e.currentItem.css("paddingBottom")||0,10))}if(!r.width()){r.width(e.currentItem.innerWidth()-parseInt(e.currentItem.css("paddingLeft")||0,10)-parseInt(e.currentItem.css("paddingRight")||0,10))}}}}e.placeholder=t(i.placeholder.element.call(e.element,e.currentItem));e.currentItem.after(e.placeholder);i.placeholder.update(e,e.placeholder)},_createTrPlaceholder:function(e,n){var i=this;e.children().each(function(){t("<td> </td>",i.document[0]).attr("colspan",t(this).attr("colspan")||1).appendTo(n)})},_contactContainers:function(e){var n,i,r,s,o,a,l,c,u,h,f=null,d=null;for(n=this.containers.length-1;n>=0;n--){if(t.contains(this.currentItem[0],this.containers[n].element[0])){continue}if(this._intersectsWith(this.containers[n].containerCache)){if(f&&t.contains(this.containers[n].element[0],f.element[0])){continue}f=this.containers[n];d=n}else{if(this.containers[n].containerCache.over){this.containers[n]._trigger("out",e,this._uiHash(this));this.containers[n].containerCache.over=0}}}if(!f){return}if(this.containers.length===1){if(!this.containers[d].containerCache.over){this.containers[d]._trigger("over",e,this._uiHash(this));this.containers[d].containerCache.over=1}}else{r=1e4;s=null;u=f.floating||this._isFloating(this.currentItem);o=u?"left":"top";a=u?"width":"height";h=u?"pageX":"pageY";for(i=this.items.length-1;i>=0;i--){if(!t.contains(this.containers[d].element[0],this.items[i].item[0])){continue}if(this.items[i].item[0]===this.currentItem[0]){continue}l=this.items[i].item.offset()[o];c=false;if(e[h]-l>this.items[i][a]/2){c=true}if(Math.abs(e[h]-l)<r){r=Math.abs(e[h]-l);s=this.items[i];this.direction=c?"up":"down"}}if(!s&&!this.options.dropOnEmpty){return}if(this.currentContainer===this.containers[d]){if(!this.currentContainer.containerCache.over){this.containers[d]._trigger("over",e,this._uiHash());this.currentContainer.containerCache.over=1}return}s?this._rearrange(e,s,null,true):this._rearrange(e,null,this.containers[d].element,true);this._trigger("change",e,this._uiHash());this.containers[d]._trigger("change",e,this._uiHash(this));this.currentContainer=this.containers[d];this.options.placeholder.update(this.currentContainer,this.placeholder);this.containers[d]._trigger("over",e,this._uiHash(this));this.containers[d].containerCache.over=1}},_createHelper:function(e){var n=this.options,i=t.isFunction(n.helper)?t(n.helper.apply(this.element[0],[e,this.currentItem])):n.helper==="clone"?this.currentItem.clone():this.currentItem;if(!i.parents("body").length){t(n.appendTo!=="parent"?n.appendTo:this.currentItem[0].parentNode)[0].appendChild(i[0])}if(i[0]===this.currentItem[0]){this._storedCSS={width:this.currentItem[0].style.width,height:this.currentItem[0].style.height,position:this.currentItem.css("position"),top:this.currentItem.css("top"),left:this.currentItem.css("left")}}if(!i[0].style.width||n.forceHelperSize){i.width(this.currentItem.width())}if(!i[0].style.height||n.forceHelperSize){i.height(this.currentItem.height())}return i},_adjustOffsetFromHelper:function(e){if(typeof e==="string"){e=e.split(" ")}if(t.isArray(e)){e={left:+e[0],top:+e[1]||0}}if("left"in e){this.offset.click.left=e.left+this.margins.left}if("right"in e){this.offset.click.left=this.helperProportions.width-e.right+this.margins.left}if("top"in e){this.offset.click.top=e.top+this.margins.top}if("bottom"in e){this.offset.click.top=this.helperProportions.height-e.bottom+this.margins.top}},_getParentOffset:function(){this.offsetParent=this.helper.offsetParent();var e=this.offsetParent.offset();if(this.cssPosition==="absolute"&&this.scrollParent[0]!==this.document[0]&&t.contains(this.scrollParent[0],this.offsetParent[0])){e.left+=this.scrollParent.scrollLeft();e.top+=this.scrollParent.scrollTop()}if(this.offsetParent[0]===this.document[0].body||this.offsetParent[0].tagName&&this.offsetParent[0].tagName.toLowerCase()==="html"&&t.ui.ie){e={top:0,left:0}}return{top:e.top+(parseInt(this.offsetParent.css("borderTopWidth"),10)||0),left:e.left+(parseInt(this.offsetParent.css("borderLeftWidth"),10)||0)}},_getRelativeOffset:function(){if(this.cssPosition==="relative"){var t=this.currentItem.position();return{top:t.top-(parseInt(this.helper.css("top"),10)||0)+this.scrollParent.scrollTop(),left:t.left-(parseInt(this.helper.css("left"),10)||0)+this.scrollParent.scrollLeft()}}else{return{top:0,left:0}}},_cacheMargins:function(){this.margins={left:parseInt(this.currentItem.css("marginLeft"),10)||0,top:parseInt(this.currentItem.css("marginTop"),10)||0}},_cacheHelperProportions:function(){this.helperProportions={width:this.helper.outerWidth(),height:this.helper.outerHeight()}},_setContainment:function(){var e,n,i,r=this.options;if(r.containment==="parent"){r.containment=this.helper[0].parentNode}if(r.containment==="document"||r.containment==="window"){this.containment=[0-this.offset.relative.left-this.offset.parent.left,0-this.offset.relative.top-this.offset.parent.top,r.containment==="document"?this.document.width():this.window.width()-this.helperProportions.width-this.margins.left,(r.containment==="document"?this.document.height()||document.body.parentNode.scrollHeight:this.window.height()||this.document[0].body.parentNode.scrollHeight)-this.helperProportions.height-this.margins.top]}if(!/^(document|window|parent)$/.test(r.containment)){e=t(r.containment)[0];n=t(r.containment).offset();i=t(e).css("overflow")!=="hidden";this.containment=[n.left+(parseInt(t(e).css("borderLeftWidth"),10)||0)+(parseInt(t(e).css("paddingLeft"),10)||0)-this.margins.left,n.top+(parseInt(t(e).css("borderTopWidth"),
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431if(this.autofocus)this.focus();this.search.attr("placeholder",n.searchInputPlaceholder)},destroy:function(){var t=this.opts.element,n=t.data("select2"),i=this;this.close();if(t.length&&t[0].detachEvent&&i._sync){t.each(function(){if(i._sync){this.detachEvent("onpropertychange",i._sync)}})}if(this.propertyObserver){this.propertyObserver.disconnect();this.propertyObserver=null}this._sync=null;if(n!==e){n.container.remove();n.liveRegion.remove();n.dropdown.remove();t.removeData("select2").off(".select2");if(!t.is("input[type='hidden']")){t.show().prop("autofocus",this.autofocus||false);if(this.elementTabIndex){t.attr({tabindex:this.elementTabIndex})}else{t.removeAttr("tabindex")}t.show()}else{t.css("display","")}}F.call(this,"container","liveRegion","dropdown","results","search")},optionToData:function(t){if(t.is("option")){return{id:t.prop("value"),text:t.text(),element:t.get(),css:t.attr("class"),disabled:t.prop("disabled"),locked:_(t.attr("locked"),"locked")||_(t.data("locked"),true)}}else if(t.is("optgroup")){return{text:t.attr("label"),children:[],element:t.get(),css:t.attr("class")}}},prepareOpts:function(n){var i,r,o,a,l=this;i=n.element;if(i.get(0).tagName.toLowerCase()==="select"){this.select=r=n.element}if(r){t.each(["id","multiple","ajax","query","createSearchChoice","initSelection","data","tags"],function(){if(this in n){throw new Error("Option '"+this+"' is not allowed for Select2 when attached to a <select> element.")}})}n.debug=n.debug||t.fn.select2.defaults.debug;if(n.debug&&console&&console.warn){if(n.id!=null){console.warn("Select2: The `id` option has been removed in Select2 4.0.0, "+"consider renaming your `id` property or mapping the property before your data makes it to Select2. "+"You can read more at https://select2.github.io/announcements-4.0.html#changed-id")}if(n.text!=null){console.warn("Select2: The `text` option has been removed in Select2 4.0.0, "+"consider renaming your `text` property or mapping the property before your data makes it to Select2. "+"You can read more at https://select2.github.io/announcements-4.0.html#changed-id")}if(n.sortResults!=null){console.warn("Select2: the `sortResults` option has been renamed to `sorter` in Select2 4.0.0. ")}if(n.selectOnBlur!=null){console.warn("Select2: The `selectOnBlur` option has been renamed to `selectOnClose` in Select2 4.0.0.")}if(n.ajax!=null&&n.ajax.results!=null){console.warn("Select2: The `ajax.results` option has been renamed to `ajax.processResults` in Select2 4.0.0.")}if(n.formatNoResults!=null){console.warn("Select2: The `formatNoResults` option has been renamed to `language.noResults` in Select2 4.0.0.")}if(n.formatSearching!=null){console.warn("Select2: The `formatSearching` option has been renamed to `language.searching` in Select2 4.0.0.")}if(n.formatInputTooShort!=null){console.warn("Select2: The `formatInputTooShort` option has been renamed to `language.inputTooShort` in Select2 4.0.0.")}if(n.formatInputTooLong!=null){console.warn("Select2: The `formatInputTooLong` option has been renamed to `language.inputTooLong` in Select2 4.0.0.")}if(n.formatLoading!=null){console.warn("Select2: The `formatLoading` option has been renamed to `language.loadingMore` in Select2 4.0.0.")}if(n.formatSelectionTooBig!=null){console.warn("Select2: The `formatSelectionTooBig` option has been renamed to `language.maximumSelected` in Select2 4.0.0.")}if(n.element.data("select2Tags")){console.warn("Select2: The `data-select2-tags` attribute has been renamed to `data-tags` in Select2 4.0.0.")}}if(n.element.data("tags")!=null){var c=n.element.data("tags");if(!t.isArray(c)){c=[]}n.element.data("select2Tags",c)}if(n.sorter!=null){n.sortResults=n.sorter}if(n.selectOnClose!=null){n.selectOnBlur=n.selectOnClose}if(n.ajax!=null){if(t.isFunction(n.ajax.processResults)){n.ajax.results=n.ajax.processResults}}if(n.language!=null){var u=n.language;if(t.isFunction(u.noMatches)){n.formatNoMatches=u.noMatches}if(t.isFunction(u.searching)){n.formatSearching=u.searching}if(t.isFunction(u.inputTooShort)){n.formatInputTooShort=u.inputTooShort}if(t.isFunction(u.inputTooLong)){n.formatInputTooLong=u.inputTooLong}if(t.isFunction(u.loadingMore)){n.formatLoading=u.loadingMore}if(t.isFunction(u.maximumSelected)){n.formatSelectionTooBig=u.maximumSelected}}n=t.extend({},{populateResults:function(i,r,o){var a,c=this.opts.id,u=this.liveRegion;a=function(i,r,h){var f,d,p,m,g,_,v,y,b,x;i=n.sortResults(i,r,o);var w=[];for(f=0,d=i.length;f<d;f=f+1){p=i[f];g=p.disabled===true;m=!g&&c(p)!==e;_=p.children&&p.children.length>0;v=t("<li></li>");v.addClass("select2-results-dept-"+h);v.addClass("select2-result");v.addClass(m?"select2-result-selectable":"select2-result-unselectable");if(g){v.addClass("select2-disabled")}if(_){v.addClass("select2-result-with-children")}v.addClass(l.opts.formatResultCssClass(p));v.attr("role","presentation");y=t(document.createElement("div"));y.addClass("select2-result-label");y.attr("id","select2-result-label-"+s());y.attr("role","option");x=n.formatResult(p,y,o,l.opts.escapeMarkup);if(x!==e){y.html(x);v.append(y)}if(_){b=t("<ul></ul>");b.addClass("select2-result-sub");a(p.children,b,h+1);v.append(b)}v.data("select2-data",p);w.push(v[0])}r.append(w);u.text(n.formatMatches(i.length))};a(r,i,0)}},t.fn.select2.defaults,n);if(typeof n.id!=="function"){o=n.id;n.id=function(t){return t[o]}}
431if(t.isArray(n.element.data("select2Tags"))){if("tags"in n){throw"tags specified as both an attribute 'data-select2-tags' and in options of Select2 "+n.element.attr("id")}n.tags=n.element.data("select2Tags")}if(r){n.query=this.bind(function(t){var n={results:[],more:false},r=t.term,s,o,a;a=function(e,n){var i;if(e.is("option")){if(t.matcher(r,e.text(),e)){n.push(l.optionToData(e))}}else if(e.is("optgroup")){i=l.optionToData(e);e.children().each2(function(t,e){a(e,i.children)});if(i.children.length>0){n.push(i)}}};s=i.children();if(this.getPlaceholder()!==e&&s.length>0){o=this.getPlaceholderOption();if(o){s=s.not(o)}}s.each2(function(t,e){a(e,n.results)});t.callback(n)});n.id=function(t){return t.id}}else{if(!("query"in n)){if("ajax"in n){a=n.element.data("ajax-url");if(a&&a.length>0){n.ajax.url=a}n.query=z.call(n.element,n.ajax)}else if("data"in n){n.query=P(n.data)}else if("tags"in n){n.query=j(n.tags);if(n.createSearchChoice===e){n.createSearchChoice=function(e){return{id:t.trim(e),text:t.trim(e)}}}if(n.initSelection===e){n.initSelection=function(e,i){var r=[];t(v(e.val(),n.separator,n.transformVal)).each(function(){var e={id:this,text:this},i=n.tags;if(t.isFunction(i))i=i();t(i).each(function(){if(_(this.id,e.id)){e=this;return false}});r.push(e)});i(r)}}}}}if(typeof n.query!=="function"){throw"query function not defined for Select2 "+n.element.attr("id")}if(n.createSearchChoicePosition==="top"){n.createSearchChoicePosition=function(t,e){t.unshift(e)}}else if(n.createSearchChoicePosition==="bottom"){n.createSearchChoicePosition=function(t,e){t.push(e)}}else if(typeof n.createSearchChoicePosition!=="function"){throw"invalid createSearchChoicePosition option must be 'top', 'bottom' or a custom function"}return n},monitorSource:function(){var n=this.opts.element,i,r=this;n.on("change.select2",this.bind(function(t){if(this.opts.element.data("select2-change-triggered")!==true){this.initSelection()}}));this._sync=this.bind(function(){var t=n.prop("disabled");if(t===e)t=false;this.enable(!t);var i=n.prop("readonly");if(i===e)i=false;this.readonly(i);if(this.container){D(this.container,this.opts.element,this.opts.adaptContainerCssClass);this.container.addClass($(this.opts.containerCssClass,this.opts.element))}if(this.dropdown){D(this.dropdown,this.opts.element,this.opts.adaptDropdownCssClass);this.dropdown.addClass($(this.opts.dropdownCssClass,this.opts.element))}});if(n.length&&n[0].attachEvent){n.each(function(){this.attachEvent("onpropertychange",r._sync)})}i=window.MutationObserver||window.WebKitMutationObserver||window.MozMutationObserver;if(i!==e){if(this.propertyObserver){delete this.propertyObserver;this.propertyObserver=null}this.propertyObserver=new i(function(e){t.each(e,r._sync)});this.propertyObserver.observe(n.get(0),{attributes:true,subtree:false})}},triggerSelect:function(e){var n=t.Event("select2-selecting",{val:this.id(e),object:e,choice:e});this.opts.element.trigger(n);return!n.isDefaultPrevented()},triggerChange:function(e){e=e||{};e=t.extend({},e,{type:"change",val:this.val()});this.opts.element.data("select2-change-triggered",true);this.opts.element.trigger(e);this.opts.element.data("select2-change-triggered",false);this.opts.element.click();if(this.opts.blurOnChange)this.opts.element.blur()},isInterfaceEnabled:function(){return this.enabledInterface===true},enableInterface:function(){var t=this._enabled&&!this._readonly,e=!t;if(t===this.enabledInterface)return false;this.container.toggleClass("select2-container-disabled",e);this.close();this.enabledInterface=t;return true},enable:function(t){if(t===e)t=true;if(this._enabled===t)return;this._enabled=t;this.opts.element.prop("disabled",!t);this.enableInterface()},disable:function(){this.enable(false)},readonly:function(t){if(t===e)t=false;if(this._readonly===t)return;this._readonly=t;this.opts.element.prop("readonly",t);this.enableInterface()},opened:function(){return this.container?this.container.hasClass("select2-dropdown-open"):false},positionDropdown:function(){var e=this.dropdown,n=this.container,i=n.offset(),r=n.outerHeight(false),s=n.outerWidth(false),o=e.outerHeight(false),a=t(window),l=a.width(),u=a.height(),h=a.scrollLeft()+l,f=a.scrollTop()+u,d=i.top+r,p=i.left,m=d+o<=f,g=i.top-o>=a.scrollTop(),_=e.outerWidth(false),v=function(){return p+_<=h},y=function(){return i.left+h+n.outerWidth(false)>_},b=e.hasClass("select2-drop-above"),x,w,k,S,M;if(b){w=true;if(!g&&m){k=true;w=false}}else{w=false;if(!m&&g){k=true;w=true}}if(k){e.hide();i=this.container.offset();r=this.container.outerHeight(false);s=this.container.outerWidth(false);o=e.outerHeight(false);h=a.scrollLeft()+l;f=a.scrollTop()+u;d=i.top+r;p=i.left;_=e.outerWidth(false);e.show();this.focusSearch()}if(this.opts.dropdownAutoWidth){M=t(".select2-results",e)[0];e.addClass("select2-drop-auto-width");e.css("width","");_=e.outerWidth(false)+(M.scrollHeight===M.clientHeight?0:c.width);_>s?s=_:_=s;o=e.outerHeight(false)}else{this.container.removeClass("select2-drop-auto-width")}if(this.body.css("position")!=="static"){x=this.body.offset();d-=x.top;p-=x.left}if(!v()&&y()){p=i.left+this.container.outerWidth(false)-_}S={left:p,width:s};if(w){this.container.addClass("select2-drop-above");e.addClass("select2-drop-above");o=e.outerHeight(false);S.top=i.top-o;S.bottom="auto"}else{S.top=d;S.bottom="auto";this.container.removeClass("select2-drop-above");e.removeClass("select2-drop-above")}S=t.extend(S,$(this.opts.dropdownCss,this.opts.element));e.css(S)},shouldOpen:function(){var e;if(this.opened())return false;if(this._enabled===false||this._readonly===true)return false;e=t.Event("select2-opening");this.opts.element.trigger(e);return!e.isDefaultPrevented()},clearDropdownAlignmentPreference:function(){this.container.removeClass("select2-drop-above");this.dropdown.removeClass("select2-drop-above")},open:function(){ 432if(!this.shouldOpen())return false;this.opening();l.on("mousemove.select2Event",function(t){a.x=t.pageX;a.y=t.pageY});return true},opening:function(){var e=this.containerEventName,n="scroll."+e,i="resize."+e,r="orientationchange."+e,s;this.container.addClass("select2-dropdown-open").addClass("select2-container-active");this.clearDropdownAlignmentPreference();
432if(this.dropdown[0]!==this.body.children().last()[0]){this.dropdown.detach().appendTo(this.body)}s=t("#select2-drop-mask");if(s.length===0){s=t(document.createElement("div"));s.attr("id","select2-drop-mask").attr("class","select2-drop-mask");s.hide();s.appendTo(this.body);s.on("mousedown touchstart click",function(e){d(s);var n=t("#select2-drop"),i;if(n.length>0){i=n.data("select2");if(i.opts.selectOnBlur){i.selectHighlighted({noFocus:true})}i.close();e.preventDefault();e.stopPropagation()}})}if(this.dropdown.prev()[0]!==s[0]){this.dropdown.before(s)}t("#select2-drop").removeAttr("id");this.dropdown.attr("id","select2-drop");s.show();this.positionDropdown();this.dropdown.show();this.positionDropdown();this.dropdown.addClass("select2-drop-active");var o=this;this.container.parents().add(window).each(function(){t(this).on(i+" "+n+" "+r,function(t){if(o.opened())o.positionDropdown()})})},close:function(){if(!this.opened())return;var e=this.containerEventName,n="scroll."+e,i="resize."+e,r="orientationchange."+e;this.container.parents().add(window).each(function(){t(this).off(n).off(i).off(r)});this.clearDropdownAlignmentPreference();t("#select2-drop-mask").hide();this.dropdown.removeAttr("id");this.dropdown.hide();this.container.removeClass("select2-dropdown-open").removeClass("select2-container-active");this.results.empty();l.off("mousemove.select2Event");this.clearSearch();this.search.removeClass("select2-active");this.search.removeAttr("aria-activedescendant");this.opts.element.trigger(t.Event("select2-close"))},externalSearch:function(t){this.open();this.search.val(t);this.updateResults(false)},clearSearch:function(){},prefillNextSearchTerm:function(){if(this.search.val()!==""){return false}var t=this.opts.nextSearchTerm(this.data(),this.lastSearchTerm);if(t!==e){this.search.val(t);this.search.select();return true}return false},getMaximumSelectionSize:function(){return $(this.opts.maximumSelectionSize,this.opts.element)},ensureHighlightVisible:function(){var e=this.results,n,i,r,s,o,a,l,c;i=this.highlight();if(i<0)return;if(i==0){e.scrollTop(0);return}n=this.findHighlightableChoices().find(".select2-result-label");r=t(n[i]);c=(r.offset()||{}).top||0;s=c+r.outerHeight(true);if(i===n.length-1){l=e.find("li.select2-more-results");if(l.length>0){s=l.offset().top+l.outerHeight(true)}}o=e.offset().top+e.outerHeight(false);if(s>o){e.scrollTop(e.scrollTop()+(s-o))}a=c-e.offset().top;if(a<0&&r.css("display")!="none"){e.scrollTop(e.scrollTop()+a)}},findHighlightableChoices:function(){return this.results.find(".select2-result-selectable:not(.select2-disabled):not(.select2-selected)")},moveHighlight:function(e){var n=this.findHighlightableChoices(),i=this.highlight();while(i>-1&&i<n.length){i+=e;var r=t(n[i]);if(r.hasClass("select2-result-selectable")&&!r.hasClass("select2-disabled")&&!r.hasClass("select2-selected")){this.highlight(i);break}}},highlight:function(e){var n=this.findHighlightableChoices(),i,r;if(arguments.length===0){return m(n.filter(".select2-highlighted")[0],n.get())}if(e>=n.length)e=n.length-1;if(e<0)e=0;this.removeHighlight();i=t(n[e]);i.addClass("select2-highlighted");this.search.attr("aria-activedescendant",i.find(".select2-result-label").attr("id"));this.ensureHighlightVisible();this.liveRegion.text(i.text());r=i.data("select2-data");if(r){this.opts.element.trigger({type:"select2-highlight",val:this.id(r),choice:r})}},removeHighlight:function(){this.results.find(".select2-highlighted").removeClass("select2-highlighted")},touchMoved:function(){this._touchMoved=true},clearTouchMoved:function(){this._touchMoved=false},countSelectableResults:function(){return this.findHighlightableChoices().length},highlightUnderEvent:function(e){var n=t(e.target).closest(".select2-result-selectable");if(n.length>0&&!n.is(".select2-highlighted")){var i=this.findHighlightableChoices();this.highlight(i.index(n))}else if(n.length==0){this.removeHighlight()}},loadMoreIfNeeded:function(){var t=this.results,e=t.find("li.select2-more-results"),n,i=this.resultsPage+1,r=this,s=this.search.val(),o=this.context;if(e.length===0)return;n=e.offset().top-t.offset().top-t.height();if(n<=this.opts.loadMorePadding){e.addClass("select2-active");this.opts.query({element:this.opts.element,term:s,page:i,context:o,matcher:this.opts.matcher,callback:this.bind(function(n){if(!r.opened())return;r.opts.populateResults.call(this,t,n.results,{term:s,page:i,context:o});r.postprocessResults(n,false,false);
432if(n.more===true){e.detach().appendTo(t).html(r.opts.escapeMarkup($(r.opts.formatLoadMore,r.opts.element,i+1)));window.setTimeout(function(){r.loadMoreIfNeeded()},10)}else{e.remove()}r.positionDropdown();r.resultsPage=i;r.context=n.context;this.opts.element.trigger({type:"select2-loaded",items:n})})})}},tokenize:function(){},updateResults:function(n){var i=this.search,r=this.results,s=this.opts,o,a=this,l,c=i.val(),u=t.data(this.container,"select2-last-term"),h;if(n!==true&&u&&_(c,u))return;t.data(this.container,"select2-last-term",c);if(n!==true&&(this.showSearchInput===false||!this.opened())){return}function f(){i.removeClass("select2-active");a.positionDropdown();if(r.find(".select2-no-results,.select2-selection-limit,.select2-searching").length){a.liveRegion.text(r.text())}else{a.liveRegion.text(a.opts.formatMatches(r.find('.select2-result-selectable:not(".select2-selected")').length))}}function d(t){r.html(t);f()}h=++this.queryCount;var p=this.getMaximumSelectionSize();if(p>=1){o=this.data();if(t.isArray(o)&&o.length>=p&&I(s.formatSelectionTooBig,"formatSelectionTooBig")){d("<li class='select2-selection-limit'>"+$(s.formatSelectionTooBig,s.element,p)+"</li>");return}}if(i.val().length<s.minimumInputLength){if(I(s.formatInputTooShort,"formatInputTooShort")){d("<li class='select2-no-results'>"+$(s.formatInputTooShort,s.element,i.val(),s.minimumInputLength)+"</li>")}else{d("")}if(n&&this.showSearch)this.showSearch(true);return}if(s.maximumInputLength&&i.val().length>s.maximumInputLength){if(I(s.formatInputTooLong,"formatInputTooLong")){d("<li class='select2-no-results'>"+$(s.formatInputTooLong,s.element,i.val(),s.maximumInputLength)+"</li>")}else{d("")}return}if(s.formatSearching&&this.findHighlightableChoices().length===0){d("<li class='select2-searching'>"+$(s.formatSearching,s.element)+"</li>")}i.addClass("select2-active");this.removeHighlight();l=this.tokenize();if(l!=e&&l!=null){i.val(l)}this.resultsPage=1;s.query({element:s.element,term:i.val(),page:this.resultsPage,context:null,matcher:s.matcher,callback:this.bind(function(o){var l;if(h!=this.queryCount){return}if(!this.opened()){this.search.removeClass("select2-active");return}if(o.hasError!==e&&I(s.formatAjaxError,"formatAjaxError")){d("<li class='select2-ajax-error'>"+$(s.formatAjaxError,s.element,o.jqXHR,o.textStatus,o.errorThrown)+"</li>");return}this.context=o.context===e?null:o.context;if(this.opts.createSearchChoice&&i.val()!==""){l=this.opts.createSearchChoice.call(a,i.val(),o.results);if(l!==e&&l!==null&&a.id(l)!==e&&a.id(l)!==null){if(t(o.results).filter(function(){return _(a.id(this),a.id(l))}).length===0){this.opts.createSearchChoicePosition(o.results,l)}}}if(o.results.length===0&&I(s.formatNoMatches,"formatNoMatches")){d("<li class='select2-no-results'>"+$(s.formatNoMatches,s.element,i.val())+"</li>");if(this.showSearch){this.showSearch(i.val())}return}r.empty();a.opts.populateResults.call(this,r,o.results,{term:i.val(),page:this.resultsPage,context:null});if(o.more===true&&I(s.formatLoadMore,"formatLoadMore")){r.append("<li class='select2-more-results'>"+s.escapeMarkup($(s.formatLoadMore,s.element,this.resultsPage))+"</li>");window.setTimeout(function(){a.loadMoreIfNeeded()},10)}this.postprocessResults(o,n);f();this.opts.element.trigger({type:"select2-loaded",items:o})})})},cancel:function(){this.close()},blur:function(){if(this.opts.selectOnBlur)this.selectHighlighted({noFocus:true});this.close();this.container.removeClass("select2-container-active");if(this.search[0]===document.activeElement){this.search.blur()}this.clearSearch();this.selection.find(".select2-search-choice-focus").removeClass("select2-search-choice-focus")},focusSearch:function(){S(this.search)},selectHighlighted:function(t){if(this._touchMoved){this.clearTouchMoved();return}var e=this.highlight(),n=this.results.find(".select2-highlighted"),i=n.closest(".select2-result").data("select2-data");if(i){this.highlight(e);this.onSelect(i,t)}else if(t&&t.noFocus){this.close()}},getPlaceholder:function(){var t;return this.opts.element.attr("placeholder")||this.opts.element.attr("data-placeholder")||this.opts.element.data("placeholder")||this.opts.placeholder||((t=this.getPlaceholderOption())!==e?t.text():e)},getPlaceholderOption:function(){if(this.select){var n=this.select.children("option").first();if(this.opts.placeholderOption!==e){return this.opts.placeholderOption==="first"&&n||typeof this.opts.placeholderOption==="function"&&this.opts.placeholderOption(this.select)}
432else if(t.trim(n.text())===""&&n.val()===""){return n}}},initContainerWidth:function(){function e(){var e,n,i,r,s,o;if(this.opts.width==="off"){return null}else if(this.opts.width==="element"){return this.opts.element.outerWidth(false)===0?"auto":this.opts.element.outerWidth(false)+"px"}else if(this.opts.width==="copy"||this.opts.width==="resolve"){e=this.opts.element.attr("style");if(typeof e==="string"){n=e.split(";");for(r=0,s=n.length;r<s;r=r+1){o=n[r].replace(/\s/g,"");i=o.match(/^width:(([-+]?([0-9]*\.)?[0-9]+)(px|em|ex|%|in|cm|mm|pt|pc))/i);if(i!==null&&i.length>=1)return i[1]}}if(this.opts.width==="resolve"){e=this.opts.element.css("width");if(e.indexOf("%")>0)return e;return this.opts.element.outerWidth(false)===0?"auto":this.opts.element.outerWidth(false)+"px"}return null}else if(t.isFunction(this.opts.width)){return this.opts.width()}else{return this.opts.width}}var n=e.call(this);if(n!==null){this.container.css("width",n)}}});i=O(n,{createContainer:function(){var e=t(document.createElement("div")).attr({"class":"select2-container"}).html(["<a href='javascript:void(0)' class='select2-choice' tabindex='-1'>"," <span class='select2-chosen'> </span><abbr class='select2-search-choice-close'></abbr>"," <span class='select2-arrow' role='presentation'><b role='presentation'></b></span>","</a>","<label for='' class='select2-offscreen'></label>","<input class='select2-focusser select2-offscreen' type='text' aria-haspopup='true' role='button' />","<div class='select2-drop select2-display-none'>"," <div class='select2-search'>"," <label for='' class='select2-offscreen'></label>"," <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input' role='combobox' aria-expanded='true'"," aria-autocomplete='list' />"," </div>"," <ul class='select2-results' role='listbox'>"," </ul>","</div>"].join(""));return e},enableInterface:function(){if(this.parent.enableInterface.apply(this,arguments)){this.focusser.prop("disabled",!this.isInterfaceEnabled())}},opening:function(){var e,n,i;if(this.opts.minimumResultsForSearch>=0){this.showSearch(true)}this.parent.opening.apply(this,arguments);if(this.showSearchInput!==false){this.search.val(this.focusser.val())}if(this.opts.shouldFocusInput(this)){this.search.focus();e=this.search.get(0);if(e.createTextRange){n=e.createTextRange();n.collapse(false);n.select()}else if(e.setSelectionRange){i=this.search.val().length;e.setSelectionRange(i,i)}}this.prefillNextSearchTerm();this.focusser.prop("disabled",true).val("");this.updateResults(true);this.opts.element.trigger(t.Event("select2-open"))},close:function(){if(!this.opened())return;this.parent.close.apply(this,arguments);this.focusser.prop("disabled",false);if(this.opts.shouldFocusInput(this)){this.focusser.focus()}},focus:function(){if(this.opened()){this.close()}else{this.focusser.prop("disabled",false);if(this.opts.shouldFocusInput(this)){this.focusser.focus()}}},isFocused:function(){return this.container.hasClass("select2-container-active")},cancel:function(){this.parent.cancel.apply(this,arguments);this.focusser.prop("disabled",false);if(this.opts.shouldFocusInput(this)){this.focusser.focus()}},destroy:function(){t("label[for='"+this.focusser.attr("id")+"']").attr("for",this.opts.element.attr("id"));this.parent.destroy.apply(this,arguments);F.call(this,"selection","focusser")},initContainer:function(){var e,n=this.container,i=this.dropdown,r=s(),o;if(this.opts.minimumResultsForSearch<0){this.showSearch(false)}else{this.showSearch(true)}this.selection=e=n.find(".select2-choice");this.focusser=n.find(".select2-focusser");e.find(".select2-chosen").attr("id","select2-chosen-"+r);this.focusser.attr("aria-labelledby","select2-chosen-"+r);this.results.attr("id","select2-results-"+r);this.search.attr("aria-owns","select2-results-"+r);this.focusser.attr("id","s2id_autogen"+r);o=t("label[for='"+this.opts.element.attr("id")+"']");this.opts.element.on("focus.select2",this.bind(function(){this.focus()}));this.focusser.prev().text(o.text()).attr("for",this.focusser.attr("id"));var a=this.opts.element.attr("title");this.opts.element.attr("title",a||o.text());this.focusser.attr("tabindex",this.elementTabIndex);this.search.attr("id",this.focusser.attr("id")+"_search");this.search.prev().text(t("label[for='"+this.focusser.attr("id")+"']").text()).attr("for",this.search.attr("id"));this.search.on("keydown",this.bind(function(t){if(!this.isInterfaceEnabled())return;if(229==t.keyCode)return;if(t.which===u.PAGE_UP||t.which===u.PAGE_DOWN){T(t);return}switch(t.which){case u.UP:case u.DOWN:this.moveHighlight(t.which===u.UP?-1:1);T(t);return;case u.ENTER:this.selectHighlighted();T(t);return;case u.TAB:this.selectHighlighted({noFocus:true});return;case u.ESC:this.cancel(t);T(t);return}}));this.search.on("blur",this.bind(function(t){if(document.activeElement===this.body.get(0)){window.setTimeout(this.bind(function(){if(this.opened()&&this.results&&this.results.length>1){this.search.focus()}}),0)}}));
432this.focusser.on("keydown",this.bind(function(t){if(!this.isInterfaceEnabled())return;if(t.which===u.TAB||u.isControl(t)||u.isFunctionKey(t)||t.which===u.ESC){return}if(this.opts.openOnEnter===false&&t.which===u.ENTER){T(t);return}if(t.which==u.DOWN||t.which==u.UP||t.which==u.ENTER&&this.opts.openOnEnter){if(t.altKey||t.ctrlKey||t.shiftKey||t.metaKey)return;this.open();T(t);return}if(t.which==u.DELETE||t.which==u.BACKSPACE){if(this.opts.allowClear){this.clear()}T(t);return}}));b(this.focusser);this.focusser.on("keyup-change input",this.bind(function(t){if(this.opts.minimumResultsForSearch>=0){t.stopPropagation();if(this.opened())return;this.open()}}));e.on("mousedown touchstart","abbr",this.bind(function(t){if(!this.isInterfaceEnabled()){return}this.clear();C(t);this.close();if(this.selection){this.selection.focus()}}));e.on("mousedown touchstart",this.bind(function(n){d(e);if(!this.container.hasClass("select2-container-active")){this.opts.element.trigger(t.Event("select2-focus"))}if(this.opened()){this.close()}else if(this.isInterfaceEnabled()){this.open()}T(n)}));i.on("mousedown touchstart",this.bind(function(){if(this.opts.shouldFocusInput(this)){this.search.focus()}}));e.on("focus",this.bind(function(t){T(t)}));this.focusser.on("focus",this.bind(function(){if(!this.container.hasClass("select2-container-active")){this.opts.element.trigger(t.Event("select2-focus"))}this.container.addClass("select2-container-active")})).on("blur",this.bind(function(){if(!this.opened()){this.container.removeClass("select2-container-active");this.opts.element.trigger(t.Event("select2-blur"))}}));this.search.on("focus",this.bind(function(){if(!this.container.hasClass("select2-container-active")){this.opts.element.trigger(t.Event("select2-focus"))}this.container.addClass("select2-container-active")}));this.initContainerWidth();this.opts.element.hide();this.setPlaceholder()},clear:function(e){var n=this.selection.data("select2-data");if(n){var i=t.Event("select2-clearing");this.opts.element.trigger(i);if(i.isDefaultPrevented()){return}var r=this.getPlaceholderOption();this.opts.element.val(r?r.val():"");this.selection.find(".select2-chosen").empty();this.selection.removeData("select2-data");this.setPlaceholder();if(e!==false){this.opts.element.trigger({type:"select2-removed",val:this.id(n),choice:n});this.triggerChange({removed:n})}}},initSelection:function(){var t;if(this.isPlaceholderOptionSelected()){this.updateSelection(null);this.close();this.setPlaceholder()}else{var n=this;this.opts.initSelection.call(null,this.opts.element,function(t){if(t!==e&&t!==null){n.updateSelection(t);n.close();n.setPlaceholder();n.lastSearchTerm=n.search.val()}})}},isPlaceholderOptionSelected:function(){var t;if(this.getPlaceholder()===e)return false;return(t=this.getPlaceholderOption())!==e&&t.prop("selected")||this.opts.element.val()===""||this.opts.element.val()===e||this.opts.element.val()===null},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),n=this;if(e.element.get(0).tagName.toLowerCase()==="select"){e.initSelection=function(t,e){var i=t.find("option").filter(function(){return this.selected&&!this.disabled});e(n.optionToData(i))}}else if("data"in e){e.initSelection=e.initSelection||function(n,i){var r=n.val();var s=null;e.query({matcher:function(t,n,i){var o=_(r,e.id(i));if(o){s=i}return o},callback:!t.isFunction(i)?t.noop:function(){i(s)}})}}return e},getPlaceholder:function(){if(this.select){if(this.getPlaceholderOption()===e){return e}}return this.parent.getPlaceholder.apply(this,arguments)},setPlaceholder:function(){var t=this.getPlaceholder();if(this.isPlaceholderOptionSelected()&&t!==e){if(this.select&&this.getPlaceholderOption()===e)return;this.selection.find(".select2-chosen").html(this.opts.escapeMarkup(t));this.selection.addClass("select2-default");this.container.removeClass("select2-allowclear")}},postprocessResults:function(t,e,n){var i=0,r=this,s=true;this.findHighlightableChoices().each2(function(t,e){if(_(r.id(e.data("select2-data")),r.opts.element.val())){i=t;return false}});if(n!==false){if(e===true&&i>=0){this.highlight(i)}else{this.highlight(0)}}if(e===true){var o=this.opts.minimumResultsForSearch;if(o>=0){this.showSearch(R(t.results)>=o)}}},showSearch:function(e){if(this.showSearchInput===e)return;this.showSearchInput=e;this.dropdown.find(".select2-search").toggleClass("select2-search-hidden",!e);this.dropdown.find(".select2-search").toggleClass("select2-offscreen",!e);t(this.dropdown,this.container).toggleClass("select2-with-searchbox",e)},onSelect:function(t,e){if(!this.triggerSelect(t)){return}var n=this.opts.element.val(),i=this.data();this.opts.element.val(this.id(t));this.updateSelection(t);this.opts.element.trigger({type:"select2-selected",val:this.id(t),choice:t});this.lastSearchTerm=this.search.val();this.close();if((!e||!e.noFocus)&&this.opts.shouldFocusInput(this)){this.focusser.focus()}if(!_(n,this.id(t))){this.triggerChange({added:t,removed:i})}},updateSelection:function(t){var n=this.selection.find(".select2-chosen"),i,r;this.selection.data("select2-data",t);n.empty();if(t!==null){i=this.opts.formatSelection(t,n,this.opts.escapeMarkup)}if(i!==e){n.append(i)}r=this.opts.formatSelectionCssClass(t,n);if(r!==e){n.addClass(r)}this.selection.removeClass("select2-default");if(this.opts.allowClear&&this.getPlaceholder()!==e){this.container.addClass("select2-allowclear")}},val:function(){var t,n=false,i=null,r=this,s=this.data();if(arguments.length===0){return this.opts.element.val()}t=arguments[0];if(arguments.length>1){n=arguments[1];if(this.opts.debug&&console&&console.warn){console.warn('Select2: The second option to `select2("val")` is not supported in Select2 4.0.0. '+"The `change` event will always be triggered in 4.0.0.")}}if(this.select){if(this.opts.debug&&console&&console.warn){console.warn('Select2: Setting the value on a <select> using `select2("val")` is no longer supported in 4.0.0. '+'You can use the `.val(newValue).trigger("change")` method provided by jQuery instead.')}this.select.val(t).find("option").filter(function(){return this.selected}).each2(function(t,e){i=r.optionToData(e);return false});this.updateSelection(i);this.setPlaceholder();if(n){this.triggerChange({added:i,removed:s})}}else{if(!t&&t!==0){this.clear(n);return}if(this.opts.initSelection===e){throw new Error("cannot call val() if initSelection() is not defined")}this.opts.element.val(t);this.opts.initSelection(this.opts.element,function(t){r.opts.element.val(!t?"":r.id(t));r.updateSelection(t);r.setPlaceholder();if(n){r.triggerChange({added:t,removed:s})}})}},clearSearch:function(){this.search.val("");this.focusser.val("")},data:function(t){var n,i=false;if(arguments.length===0){n=this.selection.data("select2-data");if(n==e)n=null;return n}else{if(this.opts.debug&&console&&console.warn){console.warn('Select2: The `select2("data")` method can no longer set selected values in 4.0.0, '+"consider using the `.val()` method instead.")}if(arguments.length>1){i=arguments[1]}if(!t){this.clear(i)}else{n=this.data();this.opts.element.val(!t?"":this.id(t));this.updateSelection(t);
432if(i){this.triggerChange({added:t,removed:n})}}}}});r=O(n,{createContainer:function(){var e=t(document.createElement("div")).attr({"class":"select2-container select2-container-multi"}).html(["<ul class='select2-choices'>"," <li class='select2-search-field'>"," <label for='' class='select2-offscreen'></label>"," <input type='text' autocomplete='off' autocorrect='off' autocapitalize='off' spellcheck='false' class='select2-input'>"," </li>","</ul>","<div class='select2-drop select2-drop-multi select2-display-none'>"," <ul class='select2-results'>"," </ul>","</div>"].join(""));return e},prepareOpts:function(){var e=this.parent.prepareOpts.apply(this,arguments),n=this;if(e.element.get(0).tagName.toLowerCase()==="select"){e.initSelection=function(t,e){var i=[];t.find("option").filter(function(){return this.selected&&!this.disabled}).each2(function(t,e){i.push(n.optionToData(e))});e(i)}}else if("data"in e){e.initSelection=e.initSelection||function(n,i){var 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vendor: 4,697 bytes, line 437
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437,0,1,1,${t-n},${e}A${n},${n},0,1,1,${this._x1=i},${this._y1=r}`)}rect(t,e,n,i){this._+=`M${this._x0=this._x1=+t},${this._y0=this._y1=+e}h${+n}v${+i}h${-n}Z`}value(){return this._||null}}class ua{constructor(){this._=[]}moveTo(t,e){this._.push([t,e])}closePath(){this._.push(this._[0].slice())}lineTo(t,e){this._.push([t,e])}value(){return this._.length?this._:null}}class ha{constructor(t,[e,n,i,r]=[0,0,960,500]){if(!((i=+i)>=(e=+e)&&(r=+r)>=(n=+n)))throw new Error("invalid bounds");this.delaunay=t,this._circumcenters=new Float64Array(2*t.points.length),this.vectors=new Float64Array(2*t.points.length),this.xmax=i,this.xmin=e,this.ymax=r,this.ymin=n,this._init()}update(){return this.delaunay.update(),this._init(),this}_init(){const{delaunay:{points:t,hull:e,triangles:n},vectors:i}=this,r=this.circumcenters=this._circumcenters.subarray(0,n.length/3*2);for(let e,i,s=0,o=0,a=n.length;s<a;s+=3,o+=2){const a=2*n[s],l=2*n[s+1],c=2*n[s+2],u=t[a],h=t[a+1],f=t[l],d=t[l+1],p=t[c],m=t[c+1],g=f-u,_=d-h,v=p-u,y=m-h,b=2*(g*y-_*v);if(Math.abs(b)<1e-9){let r=1e9;const s=2*n[0];r*=Math.sign((t[s]-u)*y-(t[s+1]-h)*v),e=(u+p)/2-r*y,i=(h+m)/2+r*v}else{const t=1/b,n=g*g+_*_,r=v*v+y*y;e=u+(y*n-_*r)*t,i=h+(g*r-v*n)*t}r[o]=e,r[o+1]=i}let s,o,a,l=e[e.length-1],c=4*l,u=t[2*l],h=t[2*l+1];i.fill(0);for(let n=0;n<e.length;++n)l=e[n],s=c,o=u,a=h,c=4*l,u=t[2*l],h=t[2*l+1],i[s+2]=i[c]=a-h,i[s+3]=i[c+1]=u-o}render(t){const e=null==t?t=new ca:void 0,{delaunay:{halfedges:n,inedges:i,hull:r},circumcenters:s,vectors:o}=this;if(r.length<=1)return null;for(let e=0,i=n.length;e<i;++e){const i=n[e];if(i<e)continue;const r=2*Math.floor(e/3),o=2*Math.floor(i/3),a=s[r],l=s[r+1],c=s[o],u=s[o+1];this._renderSegment(a,l,c,u,t)}let a,l=r[r.length-1];for(let e=0;e<r.length;++e){a=l,l=r[e];const n=2*Math.floor(i[l]/3),c=s[n],u=s[n+1],h=4*a,f=this._project(c,u,o[h+2],o[h+3]);f&&this._renderSegment(c,u,f[0],f[1],t)}return e&&e.value()}renderBounds(t){const e=null==t?t=new ca:void 0;return t.rect(this.xmin,this.ymin,this.xmax-this.xmin,this.ymax-this.ymin),e&&e.value()}renderCell(t,e){const n=null==e?e=new ca:void 0,i=this._clip(t);if(null===i||!i.length)return;e.moveTo(i[0],i[1]);let r=i.length;for(;i[0]===i[r-2]&&i[1]===i[r-1]&&r>1;)r-=2;for(let t=2;t<r;t+=2)i[t]===i[t-2]&&i[t+1]===i[t-1]||e.lineTo(i[t],i[t+1]);return e.closePath(),n&&n.value()}*cellPolygons(){const{delaunay:{points:t}}=this;for(let e=0,n=t.length/2;e<n;++e){const t=this.cellPolygon(e);t&&(t.index=e,yield t)}}cellPolygon(t){const e=new ua;return this.renderCell(t,e),e.value()}_renderSegment(t,e,n,i,r){let s;const o=this._regioncode(t,e),a=this._regioncode(n,i);0===o&&0===a?(r.moveTo(t,e),r.lineTo(n,i)):(s=this._clipSegment(t,e,n,i,o,a))&&(r.moveTo(s[0],s[1]),r.lineTo(s[2],s[3]))}contains(t,e,n){return(e=+e)==e&&(n=+n)==n&&this.delaunay._step(t,e,n)===t}*neighbors(t){const e=this._clip(t);if(e)for(const n of this.delaunay.neighbors(t)){const t=this._clip(n);if(t)t:for(let i=0,r=e.length;i<r;i+=2)for(let s=0,o=t.length;s<o;s+=2)if(e[i]==t[s]&&e[i+1]==t[s+1]&&e[(i+2)%r]==t[(s+o-2)%o]&&e[(i+3)%r]==t[(s+o-1)%o]){yield n;break t}}}_cell(t){const{circumcenters:e,delaunay:{inedges:n,halfedges:i,triangles:r}}=this,s=n[t];if(-1===s)return null;const o=[];let a=s;do{const n=Math.floor(a/3);if(o.push(e[2*n],e[2*n+1]),a=a%3==2?a-2:a+1,r[a]!==t)break;a=i[a]}while(a!==s&&-1!==a);return o}_clip(t){if(0===t&&1===this.delaunay.hull.length)return[this.xmax,this.ymin,this.xmax,this.ymax,this.xmin,this.ymax,this.xmin,this.ymin];const e=this._cell(t);if(null===e)return null;const{vectors:n}=this,i=4*t;return n[i]||n[i+1]?this._clipInfinite(t,e,n[i],n[i+1],n[i+2],n[i+3]):this._clipFinite(t,e)}_clipFinite(t,e){const n=e.length;let i,r,s,o,a=null,l=e[n-2],c=e[n-1],u=this._regioncode(l,c),h=0;for(let f=0;f<n;f+=2)if(i=l,r=c,l=e[f],c=e[f+1],s=u,u=this._regioncode(l,c),0===s&&0===u)o=h,h=0,a?a.push(l,c):a=[l,c];else{let e,n,f,d,p;if(0===s){if(null===(e=this._clipSegment(i,r,l,c,s,u)))continue;[n,f,d,p]=e}else{if(null===(e=this._clipSegment(l,c,i,r,u,s)))continue;[d,p,n,f]=e,o=h,h=this._edgecode(n,f),o&&h&&this._edge(t,o,h,a,a.length),a?a.push(n,f):a=[n,f]}o=h,h=this._edgecode(d,p),o&&h&&this._edge(t,o,h,a,a.length),a?a.push(d,p):a=[d,p]}if(a)o=h,h=this._edgecode(a[0],a[1]),o&&h&&this._edge(t,o,h,a,a.length);else if(this.contains(t,(this.xmin+this.xmax)/2,(this.ymin+this.ymax)/2))return[this.xmax,this.ymin,this.xmax,this.ymax,this.xmin,this.ymax,this.xmin,this.ymin];return a}_clipSegment(t,e,n,i,r,s){for(;;){if(0===r&&0===s)return[t,e,n,i];if(r&s)return null;let o,a,l=r||s;8&l?(o=t+(n-t)*(this.ymax-e)/(i-e),a=this.ymax):4&l?(o=t+(n-t)*(this.ymin-e)/(i-e),a=this.ymin):2&l?(a=e+(i-e)*(this.xmax-t)/(n-t),o=this.xmax):(a=e+(i-e)*(this.xmin-t)/(n-t),o=this.xmin),r?(t=o,e=a,r=this._regioncode(t,e)):(n=o,i=a,s=this._regioncode(n,i))}}_clipInfinite(t,e,n,i,r,s){let o,a=Array.from(e);if((o=this._project(a[0],a[1],n,i))&&a.unshift(o[0],o[1]),(o=this._project(a[a.length-2],a[a.length-1],r,s
vendor: 4,158 bytes, line 437
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2:this._point=3,_x(this,gx(this,n=mx(this,t,e)),n);break;default:_x(this,this._t0,n=mx(this,t,e))}this._x0=this._x1,this._x1=t,this._y0=this._y1,this._y1=e,this._t0=n}}},(yx.prototype=Object.create(vx.prototype)).point=function(t,e){vx.prototype.point.call(this,e,t)},bx.prototype={moveTo:function(t,e){this._context.moveTo(e,t)},closePath:function(){this._context.closePath()},lineTo:function(t,e){this._context.lineTo(e,t)},bezierCurveTo:function(t,e,n,i,r,s){this._context.bezierCurveTo(e,t,i,n,s,r)}},xx.prototype={areaStart:function(){this._line=0},areaEnd:function(){this._line=NaN},lineStart:function(){this._x=[],this._y=[]},lineEnd:function(){var t=this._x,e=this._y,n=t.length;if(n)if(this._line?this._context.lineTo(t[0],e[0]):this._context.moveTo(t[0],e[0]),2===n)this._context.lineTo(t[1],e[1]);else for(var 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t=d3v7.interpolateArray(r,i);return function(e){n.set_domain("x",[t(e)[0],t(e)[1]]);n.set_domain("y",[t(e)[2],t(e)[3]]);n.fast_draw()}}).on("end",function(){n.full_draw()});n.zoom_axis=""};e.prototype.set_domain=function(e,n){const i=this.scale;const r=this.boundary;const s=Math.abs(r[e].domain()[1]-r[e].domain()[0]);let o=Math.abs(n[1]-n[0]);if(e=="y"&&this["axis_y_lock"]!==false){n[0]=this.axis_y_lock_value(n);n[1]=n[0]+o}let a=s/o;if(a>this.zoom_max){a=this.zoom_max;const i=o;o=s/a;const r=(n[0]+n[1])/2;n[0]=r-o/2;n[1]=n[0]+o;if(this.debug){this.debug_data.zoom["center-"+e]=t.round(r);this.debug_data.zoom["domain-diff-"+e]=t.round(o)}}
443if(a<1){a=1;o=s/a;n[0]=r[e].min();n[1]=r[e].max()}if(this["zoom_"+e]!=a){this["zoom_"+e]=a;this.trigger("zoom")}if(n[0]<r[e].domain()[0]){n[0]=r[e].domain()[0];n[1]=n[0]+o}else if(n[1]>r[e].domain()[1]){n[1]=r[e].domain()[1];n[0]=n[1]-o}this.scale[e].domain(n);this.trigger("domain-change")};e.prototype.axis_y_lock_value=function(t){if(this.axis_y_lock===true){return this.boundary.y.domain()[0]}else{const e=Math.abs(t[1]-t[0]);return 0-e*this.axis_y_lock}};e.prototype.zoom_out_completely=function(){this.move_to([this.boundary.x.domain(),this.boundary.y.domain()]);this.scale.x.domain(this.boundary.x.domain());this.scale.y.domain(this.boundary.y.domain());this.zoom_x=1;this.zoom_y=1};e.prototype.add_spectrum=function(e,n,i){const r=(new Date).getTime();let s=d3v7.max(this.spectra().map(function(t){return t.xy_data.length()}));if(!s)s=4e4;this.points_per_ppm=s/(this.boundary.x.domain()[1]-this.boundary.x.domain()[0]);e.tolerance=t.default_for(e.tolerance,this.simplify_tolerance);e.number_of_points=t.default_for(e.number_of_points,s);e.min_x=t.default_for(e.min_x,this.boundary.x.domain()[0]);e.max_x=t.default_for(e.max_x,this.boundary.x.domain()[1]);const o=this.all_spectra().map(function(t){return t.name});e.id=t.default_for(e.id,t.unique_id("Spectrum_",1,o));if(e.xy_line&&typeof e.xy_line.x=="string"){const t=e.xy_line.x;if(this.spectra(t)){e.xy_line.x=this.spectra(t).xy_data.x}else{throw new Error("There is no spectrum with the id provided by '"+e.id+"' xy_line.x:"+t)}}const a=e.toString()=="Spectrum"?e:new t.Spectrum(e,n,i);a._sv=this;this._spectra.push(a);this.boundary.update(a.xy_data);this.scale.update(a.xy_data);this.zoombox.update();this.legend.update();if(this.debug){this.debug_data.time[e.id+"~add"]=t.elapsed_time(r);this.debug_data.data[e.id+"~noise"]=a.noise;this.debug_data.data[e.id+"~points-all"]=a.xy_data.length();this.debug_data.data[e.id+"~points-simple"]=a.simple_xy_data.length()}this.draw()};e.prototype.add_bayesil_data=function(e){this.add_spectrum({id:"Spectrum",xy_line:e.spectrum_xy},undefined,e.meta);this.add_spectrum(t.convert_bayesil_data(e))};e.prototype.replace_bayesil_data=function(t,e){const n=this;const i=[n.scale.x.domain(),n.scale.y.domain()];const r=n.spectra().length>0;n.remove_all_spectra();n.add_bayesil_data(t);if(r&&e){n.set_domain("x",i[0]) 444;n.set_domain("y",i[1])}n.draw()};e.prototype.add_nmrml_data=function(e,n="experimental"){const i={x:[],y:[]};if(!["experimental","predicted","simulated"].includes(n)){console.error("Spectra source not recognized")}else{const s=this;if(!window.X2JS){console.log("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const o=e.match(/<spectrumDataArray.*compressed="(true|false)"[^]*>(.*)<\/spectrumDataArray>/);if(o){const e=o[1]=="true";const n=o[2];const r=t.convert_base64_to_float64(n,e);let a=r[1];for(let t=0;t<r.length;t+=2){i.x.push(r[t]);i.y.push(r[t+1]);a=r[t+1]>a?r[t+1]:a}const l=1/a;i.y=i.y.map(function(t){return t*l});s.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:i})}else{console.log("No Spectrum Data Array found")}const a=e.match(/<atomAssignment[^]*<\/atomAssignment>/);let l;if(a){l=a[0]}else{console.log("Could not read nmrML (1). No <atomAssignment> tag found.");return}const c=l.match(/<structure[^]*<\/structure>/);if(s.structure&&c){const t=l.match(/<identifier.*name="(.*?)"/);if(t){s.structure.title=t[1]}s.structure.read_nmrml(c[0])}const u=e.match(/acquisitionNucleus.*name=\"(.*?)\"/);if(s.assignment_table&&u){const t=u[1];if(t.match(/hydrogen/i)||t.match(/1H/i)){s.assignment_table.nmr_nucleus="1H"}else if(t.match(/carbon/i)||t.match(/13C/i)){s.assignment_table.nmr_nucleus="13C"}}const h=new X2JS;const f=h.xml_str2json(l);let d;try{d=f.atomAssignment.chemicalCompound.identifierList.identifier._name}catch(r){console.error("nmrML contains no compound identifier");d="Compound"}const p={name:d};const m=[];let g=f.atomAssignment.atomAssignmentList.multiplet;if(g){g=Array.isArray(g)?g:[g];let t=g.map(t=>{let e=t.peakList.peak;e=Array.isArray(e)?e:[e];return e.map(t=>parseFloat(t._amplitude))});t=t.flat();let e=i.y[0];let n=i.y[0];
444i.y.forEach(function(t){e=Math.min(t,e);n=Math.max(t,n)});let r=d3v7.scaleLinear().domain([Math.min(0,Math.min(...t)),Math.max(...t)]).range([e,n]);g.forEach(function(t,e){const n=[];let i=t.peakList.peak;i=Array.isArray(i)?i:[i];i.forEach(t=>{let e=r(parseFloat(t._amplitude));t={center:parseFloat(t._center),amplitude:e};t.width=parseFloat(t._width)||.005;n.push(t)});m.push({peaks:n,meta:{nmrml_cluster_index:e}})})}p.clusters=m;let _="Simulated";let v=false;if(n==="predicted"){v=true;_="Predicted/Simulated"}else if(n==="simulated"){v=true}s.add_spectrum({id:"Simulated",name:_,display:{color:"blue",visible:v},compounds:[p]});if(s.structure&&g){const t=s.compounds(s.compounds().length).clusters();g.forEach((e,n)=>{const i=t.find(t=>{return t.meta.nmrml_cluster_index===n});if(e.atoms&&i){let t=[];const n=e.atoms._atomRefs;if(n&&n.match(/\w/)){t=n.trim().split(/\s+/)}t.forEach((e,n)=>t[n]=e.replace(/\D/g,""));i.atom_refs=t;i._atoms.merge(s.structure.atoms(t));switch(e.multiplicity._name.toLowerCase()){case"singlet feature":i.multiplet_type="s";break;case"doublet feature":i.multiplet_type="d";break;case"triplet feature":i.multiplet_type="t";break;case"quartet feature":i.multiplet_type="q";break;case"doublet of doublets feature":i.multiplet_type="dd";break;case"doublet of doublet of doublets feature":i.multiplet_type="ddd";break;case"doublet of doublet of doublets of doublets feature":i.multiplet_type="dddd";break;case"triplet of doublets feature":i.multiplet_type="td";break;case"doublet of triplets feature":i.multiplet_type="dt";break;case"triplet of triplets feature":i.multiplet_type="tt";break;case"doublet of quartets feature":i.multiplet_type="dq";break;case"doublet of doublet of triplets feature":i.multiplet_type="ddt";break;case"doublet of triplet of doublets feature":i.multiplet_type="dtd";break;case"triplet of doublets of doublets feature":i.multiplet_type="tdd";break;case"quintet feature":i.multiplet_type="quint";break;case"multiplet feature":i.multiplet_type="m";break}if(!i.hasOwnProperty("multiplet_type")){switch(e.multiplicity._accession){case"NMR:1000194":i.multiplet_type="s";break;case"NMR:1000184":i.multiplet_type="d";break;case"NMR:1000185":i.multiplet_type="t";break;case"NMR:1000186":i.multiplet_type="q";break;case"NMR:1000192":i.multiplet_type="dd";break;case"NMR:1000195":i.multiplet_type="qunit";break;case"NMR:1000196":i.multiplet_type="dt";break;case"NMR:1000197":i.multiplet_type="td";break;case"NMR:1400305":i.multiplet_type="m";break}}}})}if(n!=="experimental"){s.remove_spectra("Experimental")}s.spectra("Simulated").labels.update_peaks();s.trigger("adjust-end")}};e.prototype.add_spin_matrix_data=function(t){const e=this;const n=JSON.parse(t);const i=n.spectrum.spectrum_xy;const r=n.fit.spectrum_xy;e.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:i});e.add_spectrum({id:"Fit",name:"Fit",display:{color:"blue",visible:true},xy_line:r})};e.prototype.add_ir_data=function(t){const e=this;const n=new X2JS;const i=n.xml_str2json(t);if(i.hasOwnProperty("ms-ir")){const t=i["ms-ir"];if(t.hasOwnProperty("x-units"))e.axis_x_title=t["x-units"];if(t.hasOwnProperty("y-units"))e.axis_y_title=t["y-units"];const n=t["ms-ir-spectrum"].split("\n");const r={x:[],y:[]};for(let t of n){t=t.split(" ");r["x"].push(parseFloat(t[0]));r["y"].push(parseFloat(t[1]))}e.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:r});e.full_draw()}else{console.error("Could not find IR data")}};e.prototype.remove_spectra=function(e){this._spectra=new t.SVSet(this._spectra.filter(function(t){return t.id!=e}));this.zoombox.remove_spectra(e);this.legend.update()};e.prototype.remove_all_spectra=function(){const t=this;t.selection.clear();this.all_spectra().forEach(function(e){t.remove_spectra(e.id)});t.reset_boundaries()};e.prototype.reset_boundaries=function(){const t=this;t.selection.clear();t.boundary.initialized=false;t.scale.initialized=false;if(t.min_boundaries){console.log("Resetting boundaries to min_boundaries",t.min_boundaries);t.boundary.update(t.min_boundaries);t.scale.update(t.min_boundaries)}else{t.boundary.update({x:[0,1],y:[0,1]});t.scale.update({x:[0,1],y:[0,1]})}};e.prototype.spectra=function(e){if(e)return this._spectra.get(e);const n=new t.SVSet(this._spectra.filter(function(t){return t.active}));return n.get(e)};e.prototype.all_spectra=function(t){return this._spectra.get(t)};e.prototype.compounds=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].compounds())}return n.get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;
444i++){console.log("Merging Clusters",this._spectra[i],typeof this._spectra[i]);console.log("Prototype",Object.getPrototypeOf(this._spectra[i]));n.merge(this._spectra[i].clusters())}return n.get(e)};e.prototype.peaks=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].peaks())}return n.get(e)};e.prototype.clear=function(){this.context.clearRect(0,0,t.pixel(this.width),t.pixel(this.height))};e.prototype.draw=function(e,n,i){const r=(new Date).getTime();const s=this;e=e||false;const o=this.context;const a=this.scale;this.clear();if(this.axis_y_grid)this.draw_grid_lines("y");if(this.axis_x_grid)this.draw_grid_lines("x");this.spectra().forEach(function(t){t.compounds().draw(o,a,e,n,i);t.clusters().draw(o,a,e,n,i);t.peaks().draw(o,a,e,true,i);t.draw(o,a,e,n,i)});this.selection.draw(o,a,e,n,i);this.zoombox.set_zoom_area(this.scale);this.annotation.draw();if(this.legend_show)this.legend.draw();this.draw_axes();this.selection.draw_bounds(o,a);this.selection.draw_indicators(o,a);if(this.debug){this.debug_data.time["draw"]=t.elapsed_time(r);this.draw_debug(this.legend.bottom())}};e.prototype.full_draw=function(){const t=this.scale.x.domain()[1]-this.scale.x.domain()[0];const e=this.points_per_ppm*t;const n=Math.abs(this.scale.x.range()[1]-this.scale.x.range()[0]);n/e>3?this.draw(false,true,1):this.draw(false,false)};e.prototype.calc_draw=function(){this.draw(false,true,1)};e.prototype.fast_calc_draw=function(){this.draw(false,true,2)};e.prototype.fast_draw=function(){this.zoom_x<10?this.draw(true):this.draw()};e.prototype.flash=function(e){this.context.font=this.adjust_font(1.5);this.context.textAlign="center";this.context.textBaseline="center";const n=t.pixel(this.width)/2;const i=t.pixel(this.height)/2;this.context.fillText(e,n,i)};e.prototype.draw_debug=function(e){if(!this.debug)return;const n=this.context;const i=this.debug_data;n.font=this.adjust_font(1,"monospace");n.fillStyle="black";const r=t.pixel(18);e=e||0;let s;if(this.axis_x_reverse){s=t.pixel(10);n.textAlign="left"}else{s=t.pixel(this.width-10);n.textAlign="right"}const o=this.debug===true?Object.keys(i):this.debug;let a=0;o.forEach(function(t){const o=Object.keys(i[t]);o.forEach(function(o){n.fillText(t+"|"+o+": "+i[t][o],s,e+r*a);a+=1})})};e.prototype.adjust_font=function(e,n,i){e=e||1;n=n||"Sans-Serif";i=i||"";let r=9/1400*e;let s=r*t.pixel(this.width)+t.pixel(5);return i+" "+s+"pt "+n};e.prototype.get_font_size=function(e){let n=9/1400*e;return n*t.pixel(this.width)+t.pixel(5)};e.prototype.draw_axes=function(){const e=this.scale;this.context.strokeStyle="black";this.context.lineWidth=1;this.context.setLineDash([1,0]);const n=t.pixel(this.axis_y_gutter);const i=t.pixel(this.axis_x_gutter);this.context.clearRect(e.x.range_min(),e.y.range_max(),e.x.range_max()+n,i);const r=this.axis_x_reverse?e.x.range_max():0;this.context.clearRect(r,e.y.range_min(),n,e.y.range_max()+i);this.context.fillStyle="black";if(this.axis_y_show)this.draw_y_axis();if(this.axis_x_show)this.draw_x_axis()};e.prototype.draw_x_axis=function(){const e=this;const n=t.pixel(this.tick_length);const i=this.context;const r=this.scale;i.beginPath();i.moveTo(r.x.range()[1],r.y.range()[0]);i.lineTo(r.x.range()[0],r.y.range()[0]);i.stroke();i.textAlign="center";i.textBaseline="top";i.font=this.font;r.x.ticks(this.x_tick_count).forEach(function(t){i.beginPath();i.moveTo(r.x(t),r.y.range()[0]);i.lineTo(r.x(t),r.y.range()[0]+n);i.stroke();const s=parseFloat(t.toFixed(e.tick_precision));i.fillText(s,r.x(t),r.y.range()[0]+n)});if(this.axis_x_title){i.font=this.axis_title_font;const t=r.x.range_diff()/2;const e=r.y.range()[0]+3*n;i.fillText(this.axis_x_title,t,e)}};e.prototype.draw_y_axis=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=this.axis_x_reverse?1:-1;const o=s*t.pixel(this.tick_length);const a=i.x.range()[0]+s*t.pixel(this.tick_length+r);const l=10;n.beginPath();n.moveTo(i.x.range()[0],i.y.range()[1]-l);n.lineTo(i.x.range()[0],i.y.range()[0]-l);n.stroke();n.textAlign=this.axis_x_reverse?"left":"right";n.textBaseline="middle";n.font=this.font;
444let c=0;i.y.ticks(this.tick_count).forEach(function(t){n.beginPath();n.moveTo(i.x.range()[0],i.y(t)-l);n.lineTo(i.x.range()[0]+o,i.y(t)-l);n.stroke();n.fillText(e.axis_y_tick_format(t),a,i.y(t)-l);if(e.axis_y_title){const e=Number(n.measureText(t).width);if(e>c)c=e}});if(this.axis_y_title){const e=t.pixel(4);const a=t.pixel(this.axis_y_gutter);const l=/(\d+\.?\d*)pt/.exec(this.axis_title_font)[1];const u=c+Math.abs(o)+Number(l)+e+r;if(u<a){n.save();n.textAlign="center";n.textBaseline="middle";n.font=this.axis_title_font;const t=i.x.range()[0]+(a-e-Number(l)/2)*s;const r=i.y.range()[0]/2;n.translate(t,r);n.rotate(s*Math.PI/2);n.translate(-t,-r);n.fillText(this.axis_y_title,t,r);n.restore()}}};e.prototype.draw_grid_lines=function(e){const n=this;const i=this.context;const r=i;const s=this.scale;s[e].ticks(this.tick_count).forEach(function(n){i.beginPath();if(e=="y"){i.moveTo(s.x.range()[0],s.y(n));i.lineTo(s.x.range()[1],s.y(n))}else if(e=="x"){i.moveTo(s.x(n),s.y.range()[0]);i.lineTo(s.x(n),s.y.range()[1])}i.strokeStyle="rgb(210,210,210)";i.lineWidth=t.pixel(.5);i.stroke()});this.context=r};e.prototype.draw_y_axis2=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=d3v7.min(i.x.range());const o=d3v7.max(i.x.range());const a=d3v7.min(i.y.range());const l=d3v7.max(i.y.range());let c,u,h;if(this.axis_y_left){c=s;u=c-t.pixel(this.tick_length+r);n.textAlign="right";h=-t.pixel(this.tick_length)}else{c=o;u=c+t.pixel(this.tick_length+r);n.textAlign="left";h=t.pixel(this.tick_length)}n.beginPath();n.moveTo(c,a);n.lineTo(c,l);n.stroke();n.textBaseline="middle";n.font=this.font;let f=0;i.y.ticks(this.tick_count).forEach(function(t){n.beginPath();n.moveTo(c,i.y(t));n.lineTo(c+h,i.y(t));n.stroke();n.fillText(t,u,i.y(t));if(e.axis_y_title){const e=Number(n.measureText(t).width);if(e>f)f=e}});if(this.axis_y_title){const e=t.pixel(4);const r=t.pixel(this.axis_y_gutter);const s=/(\d+)pt/.exec(this.axis_title_font)[1];const o=f+h+Number(s)+e;if(o<r){n.save();n.textAlign="center";n.textBaseline="hanging";n.font=this.axis_title_font;n.rotate(Math.PI/2);const t=-i.x.range()[0]-r+e;const s=i.y.range()[0]/2;n.fillText(this.axis_y_title,s,t);n.restore()}}};e.prototype.get_peak_domains=function(e,n){const i=.1;let r=e[0];let s=e[0];let o,a;for(let t=1;t<e.length;t++){const n=e[t];if(n.center<r.center)r=n;if(n.center>s.center)s=n}const l=t.xy_from_peaks(e,1e3,r.center,s.center);let c=d3v7.max(l.y);if(n){o=r.center-r.width/2;a=s.center+s.width/2}else{o=r.center-r.width;a=s.center+s.width;const t=(a-o)*i;o-=t;a+=t;c+=c*i}return[[o,a],[0,c]]};e.prototype.move_to_compound=function(t,e,n){const i=this.spectra(t);const r=i&&i.compounds(e);this.move_to_peaks(r.peaks(),n)};e.prototype.move_to_peaks=function(t,e,n){n=n||1;const i=this.get_peak_domains(t);i[1][1]=i[1][1]*n;const r=Math.abs(i[0][1]-i[0][0]);i[0][0]=i[0][0]-(r-r/n);i[0][1]=i[0][1]+(r-r/n);this.move_to(i,e)};e.prototype.set_domain_to_brush_extent=function(t,e){const n=this.domains_from_brush_extent(t,e);this.set_domain("x",n[0]);this.set_domain("y",n[1])};e.prototype.domains_from_brush_extent=function(t,e){const n=[t[0][0],t[1][0]];const i=[t[0][1],t[1][1]];return[n,i]};e.prototype.elements=function(e,n,i,r){const s=this;let o=i;if(!i){n=t.default_for(n,s);if(typeof n=="string"){n=s.spectra(n)}if(!n){o=new t.SVSet}else if(e=="peak"){o=n.peaks()}
444else if(e=="cluster"){o=n.clusters()}else if(e=="compound"){o=n.compounds()}else if(e=="spectrum"){o=n.spectra()}else{o=new t.SVSet}}if(r){o=new t.SVSet(o.filter(function(t){return t.visible}))}return o};e.prototype.find_element_mouse_over=function(e,n,i,r){const s=this;let o;elements=s.elements(e,n,i,r);elements.forEach(function(e){e.y_for_mouse_x=t.sum_of_peaks(s.mx,e.peaks())});elements.order_by("y_for_mouse_x");for(let t=0;t<elements.length;t++){if(s.my<=elements[t].y_for_mouse_x&&s.my>=0){o=elements[t];break}}return o};e.prototype.max_y_in_range=function(t,e){};e.prototype.image=function(e,n){e=e||this.width;n=n||this.height;const i=this.context;const r=this.zoombox.visible;const s=d3v7.select("body").append("canvas").attr("width",e).attr("height",n).node();t.scale_resolution(s,t.pixel_ratio);this.context=s.getContext("2d");const o=t.pixel(n-this.axis_x_gutter);this.scale.x.range(this.x_range(e));this.scale.y.range([o,0]);this.zoombox.visible=false;this.full_draw();image=s.toDataURL();this.scale.x.range(this.x_range());this.scale.y.range([this.scaled_height,0]);this.context=i;this.zoombox.visible=r;d3v7.select(s).remove();return image};e.prototype.initial_settings=function(){const e=this;this.settings=new t.SVSettings(this,{title:"JSV Settings",width:"250",height:"210",settings:[{label:"Grid lines [y-axis]",property:"axis_y_grid",type:"boolean"},{label:"Grid lines [x-axis]",property:"axis_x_grid",type:"boolean"},{label:"Show Zoombox",property:function(t){if(arguments.length==0)return e.zoombox.visible;e.zoombox.visible=t},type:"boolean"},{label:"Show Legend",property:"legend_show",type:"boolean"}]})};t.SpectraViewer=e})(JSpectraViewer);(function(t){const e=function(e,n){let i=this;this.container=d3v7.select(e);n=n||{};this.title=n.title;this.width=t.default_for(n.width,800);this.height=t.default_for(n.height,400);this.tick_count=t.default_for(n.tick_count,10);this.x_tick_count=t.default_for(n.x_tick_count,10);this.tick_length=t.default_for(n.tick_length,10);this.tick_precision=t.default_for(n.tick_precision,3);this.axis_x_tick_format=d3v7.format(t.default_for(n.axis_x_tick_format,"~g"));this.axis_y_tick_format=d3v7.format(t.default_for(n.axis_y_tick_format,"~g"));this.axis_x_title=t.default_for(n.axis_x_title,"ppm");this.axis_y_title=t.default_for(n.axis_y_title,"ppm");this.axis_y_show=t.default_for(n.axis_y_show,"ppm");this.axis_x_show=t.default_for(n.axis_x_show,true);this.axis_y_grid=t.default_for(n.axis_y_grid,false);this.axis_x_grid=t.default_for(n.axis_x_grid,false);this.axis_y_reverse=t.default_for(n.axis_y_reverse,false);this.axis_x_reverse=t.default_for(n.axis_x_reverse,true);this.axis_y_lock=t.default_for(n.axis_y_lock,false);this.min_boundaries=n.min_boundaries;this.zoom_max=t.default_for(n.zoom_max,25);this.zoom_min=t.default_for(n.zoom_min,.25);this.simplify_tolerance=n.simplify_tolerance;this.debug=t.default_for(n.debug,false);this.debug_data={time:{},data:{},drag:{},zoom:{},zbox:{}};const r=t.viewers().map(function(t){return t.id});this.id=t.default_for(n.id,t.unique_id("jsv-",1,r));this.axis_y_gutter=this.axis_y_show?t.default_for(n.axis_y_gutter,.14*this.width):0;this.axis_x_gutter=this.axis_x_show?t.default_for(n.axis_x_gutter,150):0;this.threshold=1;const s=this.title?"<h3>"+this.title+"</h3>":"";this.container.html(s).style("width",this.width+2+"px");this.sv_wrapper=this.container.append("div").attr("class","sv-wrapper").style("position","relative");this.container.append("div").attr("class","sv-key-down").style("display","none");this.canvas=this.sv_wrapper.append("canvas").attr("id",this.container.attr("id")).attr("class","spectra-viewer "+this["class"]).style("border","1px solid #DDD").attr("width",this.width).attr("height",this.height).node();if(!this.canvas.getContext){this.container.html("<h3>Spectra Viewer requires Canvas, which is not supported by this browser.</h3>");throw"Canvas not supported"}t.pixel_ratio=t.get_pixel_ratio(this.canvas);t.scale_resolution(this.canvas,t.pixel_ratio);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.context=this.canvas.getContext("2d");if(!this.context.setLineDash){this.context.setLineDash=function(){}}this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale=new t.SVScale;this.scale.y.range([0,this.scaled_height]);this.scale.x.range(this.x_range());this.boundary=new t.SVScale;this.boundary.x.range(this.x_range());this.boundary.y.range([this.scaled_height,0]);this.boundary.clamp(true);if(this.min_boundaries){this.boundary.update(this.min_boundaries);this.scale.update(this.min_boundaries)}this._spectra=new t.SVSet;this.shift_plot();this.svg=this.sv_wrapper.append("svg").attr("width",this.width).attr("height",this.height).attr("class","svg-viewer").style("position","absolute").style("top",0).style("left",0);this.svg.style("cursor","crosshair");this.svg.append("text").attr("id","crosshairs_label").attr("x","0.35em").attr("y","1em");this.svg.append("line").attr("id","crosshair_x").style("stroke","blue").style("stroke-width",1);this.svg.append("line").attr("id","crosshair_y").style("stroke","blue").style("stroke-width",1);this.svg.on("mousemove",function(e){const n=d3v7.pointer(e,this);i.mx=i.scale.x.invert(t.pixel(n[0]));i.my=i.scale.y.invert(t.pixel(n[1]));i.annotation.check_hover();d3v7.select("#crosshair_x").attr("x1",0).attr("y1",n[1]).attr("x2",i.width).attr("y2",n[1]);d3v7.select("#crosshair_y").attr("x1",n[0]).attr("y1",0).attr("x2",n[0]).attr("y2",i.height);if(i.debug)d3v7.select("#crosshairs_label").text("x: "+i.mx+" y: "+i.my)});this.zoom_rect={r:null,origin:null,translated_origin:null};i.svg.call(d3v7.drag().on("start",this.drag_zoom().start).on("drag",this.drag_zoom().drag).on("end",this.drag_zoom().end));this.initialize_zooming();d3v7.select(window).on("keydown",i.keydown).on("keyup",i.keyup);this.svg.on("mouseover",function(){i.contains_mouse=true;document.activeElement.blur()});this.svg.on("mouseout",function(){i.contains_mouse=false});this.handlers=new t.SVEvents;this.on=this.handlers.on;this.off=this.handlers.off;this.trigger=this.handlers.trigger;this.selection=new t.SVSelection(this,t.default_for(n.select,{}));this.annotation=new t.SVAnnotation(i);this.menu=new t.SVMenu(i);this.help=new t.SVHelp(i);this.cluster_navigation_id=n.cluster_navigation_id;if(n.structure){this.structure=new t.SVStructure(n.structure)}if(n.assignment_table){console.log("Assignment Table 2D set to",this.assignment_table);this.assignment_table=new t.SVAssignments2D(i,n.assignment_table)}t._viewers.push(this);this.draw()};e.prototype.toString=function(){return"SpectraViewer2D"};Object.defineProperties(e.prototype,{cluster_navigation_id:{get:function(){return this._cluster_navigation_id},set:function(e){console.log("Setting cluster_navigation_id",e);this._cluster_navigation_id=e;if(this._cluster_navigation_id){this._cluster_navigation=new t.SVClusterNavigator(this,e)}else{if(this._cluster_navigation){this._cluster_navigation.detach();this._cluster_navigation=undefined}}}},structure_viewer_id:{get:function(){return this._structure_viewer_id},set:function(e){this._structure_viewer_id=e;if(this._structure_viewer_id){this._structure_viewer=new t.SVStructure(this,e)}else{if(this._structure_viewer){this._structure_viewer.detach();this._structure_viewer=undefined}}}}});e.prototype.x_range=function(e){e=e||this.width;const n=t.pixel(e-this.axis_y_gutter);return this.axis_x_reverse?[n,0]:[t.pixel(this.axis_y_gutter),t.pixel(e)]};e.prototype.resize=function(e,n,i){this.shift_plot(true);this.width=e||this.width;this.height=n||this.height;this.container.style("width",this.width+"px");d3v7.select(this.canvas).attr("width",this.width).attr("height",this.height);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale.y.range([0,this.scaled_height]);this.boundary.y.range([this.scaled_height,0]);this.scale.x.range(this.x_range());this.boundary.x.range(this.x_range());this.svg.attr("width",this.width).attr("height",this.height);t.scale_resolution(this.canvas,t.pixel_ratio);this.shift_plot();this.draw()};e.prototype.keyval=function(){return d3v7.select(".sv-key-down").html()};d3v7.selection.prototype.moveToFront=function(){return this.each(function(){this.parentNode.appendChild(this)})};e.prototype.keydown=function(t){if(t[this.zoom_brush_key]){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","crosshair")}d3v7.selectAll(".sv-key-down").html(t.keyCode)};e.prototype.keyup=function(t){if(t.keyCode==16){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","all-scroll")}d3v7.selectAll(".sv-key-down").html("")};e.prototype.pixels_to_units_of_axis=function(e,n){const i=this;return i.scale[e].invert(t.pixel(n))-i.scale[e].invert(0)};e.prototype.set_zoom_axis=function(t){if(t){if(this.zoom_axis!="y"){this.zoom_axis="y";this.zoom_behavior.scale(this.zoom_y);this.set_zoom_cursor(t)}}else{if(this.zoom_axis!="x"){this.zoom_axis="x";this.zoom_behavior.scale(this.zoom_x);this.set_zoom_cursor(t)}}};e.prototype.set_zoom_cursor=function(t){if(t){this.svg.style("cursor","ns-resize")}else{this.svg.style("cursor","ew-resize")}};e.prototype.scale_axis=function(e,n){const i=Math.abs(this.boundary[e].domain()[0]-this.boundary[e].domain()[1])/n;const r=e==="x"?0:1;let s=this.scale[e].invert(this.mouse(this.canvas)[r]);let o=(s-this.scale[e].domain()[0])/Math.abs(this.scale[e].domain()[0]-this.scale[e].domain()[1]);if(e=="y"){o=0;s=this.scale.y.domain()[0]}const a=[s-i*o,s+i*(1-o)];this.scale[e].domain(a);this.set_domain(e,a);if(this.debug){e=e.toUpperCase();this.debug_data.zoom["d"+e]=t.round(i);this.debug_data.zoom["v"+e]=t.round(s);this.debug_data.zoom["r"+e]=t.round(o)}};e.prototype.mouse=function(e){return d3v7.mouse(e).map(function(e){return t.pixel(e)})};e.prototype.translate_axis=function(e,n){const i=this.scale[e].range().map(function(e){return e-t.pixel(n)}).map(this.scale[e].invert);this.set_domain(e,i)};e.prototype.shift_plot=function(t=false){if(t){this.context.translate(-this.x_range()[0]*.08,-this.scaled_height*.12)}
444else{this.context.translate(this.x_range()[0]*.08,this.scaled_height*.12)}};e.prototype.absolute_to_translated_context=function(t,e){let n=this.x_range()[0]*.08;let i=this.scaled_height*.12;let r=this.scale.x.range()[1];let s=this.scale.x.range()[0];let o=this.scale.y.range()[0];let a=this.scale.y.range()[1];t=t-n;e=e-i;t=Math.max(r,Math.min(s,t));e=Math.max(o,Math.min(a,e));return[this.scale.x.invert(t),this.scale.y.invert(e)]};e.prototype.move_to=function(t,e){const n=this;e=e||500;if(this.axis_y_lock!==false){t[1][0]=this.axis_y_lock_value(t[1])}let i=[];let r=[];i=i.concat.apply(i,t);r=r.concat.apply(r,[n.scale.x.domain(),n.scale.y.domain()]);d3v7.select(this.canvas).transition().duration(e).tween("move",function(){const t=d3v7.interpolateArray(r,i);return function(e){n.set_domain("x",[t(e)[0],t(e)[1]]);n.set_domain("y",[t(e)[2],t(e)[3]]);n.fast_draw()}}).on("end",function(){n.full_draw()});n.zoom_axis=""};e.prototype.set_domain=function(e,n){const i=this.scale;const r=this.boundary;const s=Math.abs(r[e].domain()[1]-r[e].domain()[0]);let o=Math.abs(n[1]-n[0]);if(e=="y"&&this["axis_y_lock"]!==false){n[0]=this.axis_y_lock_value(n);n[1]=n[0]+o}let a=s/o;if(a>this.zoom_max){a=this.zoom_max;const i=o;o=s/a;const r=(n[0]+n[1])/2;n[0]=r-o/2;n[1]=n[0]+o;if(this.debug){this.debug_data.zoom["center-"+e]=t.round(r);this.debug_data.zoom["domain-diff-"+e]=t.round(o)}}if(a<1){a=1;o=s/a;n[0]=r[e].min();n[1]=r[e].max()}if(this["zoom_"+e]!=a){this["zoom_"+e]=a;this.trigger("zoom")}if(n[0]<r[e].domain()[0]){n[0]=r[e].domain()[0];n[1]=n[0]+o}else if(n[1]>r[e].domain()[1]){n[1]=r[e].domain()[1];n[0]=n[1]-o}this.scale[e].domain(n);this.trigger("domain-change")};e.prototype.axis_y_lock_value=function(t){if(this.axis_y_lock===true){return this.boundary.y.domain()[0]}else{const e=Math.abs(t[1]-t[0]);return 0-e*this.axis_y_lock}};e.prototype.zoom_out_completely=function(){this.move_to([this.boundary.x.domain(),this.boundary.y.domain()]);this.scale.x.domain(this.boundary.x.domain());this.scale.y.domain(this.boundary.y.domain());this.zoom_x=1;this.zoom_y=1};e.prototype.add_spectrum_2d=function(e,n,i){let r=e.json_data.y.map(t=>e.json_data.y[0]-t);let s=Math.floor(Math.min(...e.json_data.x));let o=Math.ceil(Math.max(...e.json_data.x));let a=Math.floor(Math.min(...r));let l=Math.ceil(Math.max(...r));this.min_boundaries={x:[s,o],y:[a,l]};this.boundary.update(this.min_boundaries);this.scale.update(this.min_boundaries);e.min_x=t.default_for(e.min_x,this.boundary.x.domain()[0]);e.max_x=t.default_for(e.max_x,this.boundary.x.domain()[1]);const c=this.all_spectra().map(function(t){return t.name});e.id=t.default_for(e.id,t.unique_id("Spectrum2D_",1,c));const u=e.toString()=="Spectrum2D"?e:new t.Spectrum2D(e,n,i);u._sv=this;this._spectra.push(u);this.boundary.update(u.xyz_data);this.scale.update(u.xyz_data);this.draw()};e.prototype.add_nmrml_data=function(e){let n=this;if(!window.X2JS){console.error("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const i={x:/<spectrumDataArray2dDirectDimensionF2.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dDirectDimensionF2>/,y:/<spectrumDataArray2dIndirectDimensionF1.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dIndirectDimensionF1>/,z:/<spectrumDataArray2dIntensities.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dIntensities>/};let r={};Object.entries(i).forEach(function([n,i]){const s=e.match(i);if(s){let e=s[1]==="true";let i=s[2];r[n]=Array.from(t.convert_base64_to_float64(i,e))}else{console.error(`${n} data array not found`)}});if(Object.keys(i).every(t=>t in r)){n.add_spectrum_2d({json_data:r});const t=e.match(/<atomAssignment[^]*<\/atomAssignment>/);let i;if(t){i=t[0]}else{console.log("Could not read nmrML (2). No <atomAssignment> tag found.");return}const s=i.match(/<structure[^]*<\/structure>/);if(n.structure&&s){const t=i.match(/<identifier.*name="(.*?)"/);if(t){n.structure.title=t[1]}n.structure.read_nmrml(s[0])}const o=new X2JS;const a=o.xml_str2json(i);const l={name:a.atomAssignment.chemicalCompound.identifierList.identifier._name};const c=[];let u=a.atomAssignment.atomAssignmentList.multiplet;if(u){u=Array.isArray(u)?u:[u];u.forEach(function(t,e){const n=[t._dir_dim_center,t._indir_dim_center];c.push({peaks:n,meta:{nmrml_cluster_index:e}})});l.clusters=c;if(n.structure&&u){const t=n.compounds(n.compounds().length).cluster
444s();u.forEach((e,i)=>{const r=t.find(t=>{return t.meta.nmrml_cluster_index===i});if(e.atoms&&r){let t=[];let i=[];const s=e.atoms._dir_dim_atomRefs;const o=e.atoms._indir_dim_atomRefs;if(s&&s.match(/\w/)&&o&&o.match(/\w/)){t=s.trim().split(/\s+/);i=o.trim().split(/\s+/)}t.forEach((e,n)=>{t[n]=e.replace(/\D/g,"")});i.forEach((t,e)=>{i[e]=t.replace(/\D/g,"")});r.dir_dim_atom_refs=t;r.indir_dim_atom_refs=o;const a=t.concat(i.filter(e=>t.indexOf(e)<0));r._atoms.merge(n.structure.atoms(a));switch(e.multiplicity._name.toLowerCase()){case"singlet feature":r.multiplet_type="s";break;case"doublet feature":r.multiplet_type="d";break;case"triplet feature":r.multiplet_type="t";break;case"quartet feature":r.multiplet_type="q";break;case"doublet of doublets feature":r.multiplet_type="dd";break;case"doublet of doublet of doublets feature":r.multiplet_type="ddd";break;case"doublet of doublet of doublets of doublets feature":r.multiplet_type="dddd";break;case"triplet of doublets feature":r.multiplet_type="td";break;case"doublet of triplets feature":r.multiplet_type="dt";break;case"triplet of triplets feature":r.multiplet_type="tt";break;case"doublet of quartets feature":r.multiplet_type="dq";break;case"doublet of doublet of triplets feature":r.multiplet_type="ddt";break;case"doublet of triplet of doublets feature":r.multiplet_type="dtd";break;case"triplet of doublets of doublets feature":r.multiplet_type="tdd";break;case"quintet feature":r.multiplet_type="quint";break;case"multiplet feature":r.multiplet_type="m";break}if(!r.hasOwnProperty("multiplet_type")){switch(e.multiplicity._accession){case"NMR:1000194":r.multiplet_type="s";break;case"NMR:1000184":r.multiplet_type="d";break;case"NMR:1000185":r.multiplet_type="t";break;case"NMR:1000186":r.multiplet_type="q";break;case"NMR:1000192":r.multiplet_type="dd";break;case"NMR:1000195":r.multiplet_type="qunit";break;case"NMR:1000196":r.multiplet_type="dt";break;case"NMR:1000197":r.multiplet_type="td";break;case"NMR:1400305":r.multiplet_type="m";break}}}})}}n.trigger("adjust-end")}else{console.error("Could not read in Spectrum Data")}};e.prototype.remove_spectra=function(e){this._spectra=new t.SVSet(this._spectra.filter(function(t){return t.id!=e}))};e.prototype.remove_all_spectra=function(){const t=this;t.selection.clear();this.all_spectra().forEach(function(e){t.remove_spectra(e.id)});t.reset_boundaries()};e.prototype.reset_boundaries=function(){const t=this;t.selection.clear();t.boundary.initialized=false;t.scale.initialized=false;if(t.min_boundaries){t.boundary.update(t.min_boundaries);t.scale.update(t.min_boundaries)}else{t.boundary.update({x:[0,1],y:[0,1]});t.scale.update({x:[0,1],y:[0,1]})}};e.prototype.spectra=function(e){if(e)return this._spectra.get(e);const n=new t.SVSet(this._spectra.filter(function(t){return t.active}));return n.get(e)};e.prototype.all_spectra=function(t){return this._spectra.get(t)};e.prototype.compounds=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].compounds())}return n.get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){console.log("Merging Clusters",this._spectra[i],typeof this._spectra[i]);console.log("Prototype",Object.getPrototypeOf(this._spectra[i]));n.merge(this._spectra[i].clusters())}return n.get(e)};e.prototype.clear=function(e=false){if(e){this.context.clearRect(0,-1,t.pixel(this.width),t.pixel(this.height)+1);this.context.clearRect(-this.x_range()[0]*.08,t.pixel(this.height)-t.pixel(this.axis_x_gutter),t.pixel(this.width),t.pixel(this.height))}else{this.shift_plot(true);this.context.clearRect(0,0,t.pixel(this.width),t.pixel(this.height));this.shift_plot()}};e.prototype.draw=function(e,n,i){const r=(new Date).getTime();const s=this;e=e||false;const o=this.context;const a=this.scale;this.clear(e);if(this.axis_y_grid)this.draw_grid_lines("y");if(this.axis_x_grid)this.draw_grid_lines("x");this.spectra().forEach(function(t){t.draw(o,a,e,s.scaled_height,s.x_range(),s.threshold)});this.draw_axes();if(this.debug){this.debug_data.time["draw"]=t.elapsed_time(r)}} 445;e.prototype.full_draw=function(){const t=this.scale.x.domain()[1]-this.scale.x.domain()[0];const e=this.points_per_ppm*t;const n=Math.abs(this.scale.x.range()[1]-this.scale.x.range()[0]);n/e>3?this.draw(false,true,1):this.draw(false,false)};e.prototype.calc_draw=function(){this.draw(false,true,1)};e.prototype.fast_calc_draw=function(){this.draw(false,true,2)};e.prototype.fast_draw=function(){this.draw(true)};e.prototype.flash=function(e){this.context.font=this.adjust_font(1.5);this.context.textAlign="center";this.context.textBaseline="center";const n=t.pixel(this.width)/2;const i=t.pixel(this.height)/2;this.context.fillText(e,n,i)};e.prototype.draw_debug=function(e){if(!this.debug)return;const n=this.context;const i=this.debug_data;n.font=this.adjust_font(1,"monospace");n.fillStyle="black";const r=t.pixel(18);e=e||0;let s;if(this.axis_x_reverse){s=t.pixel(10);n.textAlign="left"}else{s=t.pixel(this.width-10);n.textAlign="right"}const o=this.debug===true?Object.keys(i):this.debug;let a=0;o.forEach(function(t){const o=Object.keys(i[t]);o.forEach(function(o){n.fillText(t+"|"+o+": 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r=this.scale;i.beginPath();i.moveTo(r.x.range()[1],r.y.range()[1]);i.lineTo(r.x.range()[0],r.y.range()[1]);i.stroke();i.textAlign="center";i.textBaseline="top";i.font=this.font;r.x.ticks(this.x_tick_count).forEach(function(t){i.beginPath();i.moveTo(r.x(t),r.y.range()[1]);i.lineTo(r.x(t),r.y.range()[1]+n);i.stroke();let s=+t.toFixed(e.tick_precision);i.fillText(e.axis_x_tick_format(s),r.x(t),r.y.range()[1]+n)});if(this.axis_x_title){i.font=this.axis_title_font;const t=r.x.range_diff()/2;const e=r.y.range()[1]+3*n;i.fillText(this.axis_x_title,t,e)}};e.prototype.draw_y_axis=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=this.axis_x_reverse?1:-1;const o=s*t.pixel(this.tick_length);const a=i.x.range()[0]+s*t.pixel(this.tick_length+r);n.beginPath();n.moveTo(i.x.range()[0],i.y.range()[1]);n.lineTo(i.x.range()[0],i.y.range()[0]);n.stroke();
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n(t){e.drag_event=true;t.sourceEvent.preventDefault();e.svg.style("cursor","all-scroll");e.trigger("drag-start")}function i(n){const i=(new Date).getTime();e.translate_axis("x",n.dx);e.translate_axis("y",n.dy);e.trigger("drag");e.fast_draw();if(e.debug){console.log("dragging");e.debug_data.time["drag"]=t.elapsed_time(i);e.debug_data.drag["dX"]=t.round(n.dx);e.debug_data.drag["dY"]=t.round(n.dy);e.debug_data.drag["zX"]=t.round(e.zoom_x);e.debug_data.drag["zY"]=t.round(e.zoom_y)}}function r(){e.drag_event=false;e.trigger("drag-end");e.full_draw()}};t.SpectraViewer.prototype.initialize_zooming=function(){const e=this;e.zoom_behavior=d3v7.zoom().scaleExtent([1,e.zoom_max]).on("start",n).on("zoom",i).on("end",r);e.svg.call(e.zoom_behavior).on("mousedown.zoom",null).on("dblclick.zoom",null);e.zoom_x=1;e.zoom_y=1;e.zoom_axis="x";e.zoom_y_key="altKey";function n(t){if(e.drag_event)return;const n=t.sourceEvent[e.zoom_y_key];e.set_zoom_axis(n,t);e.set_zoom_cursor(n);e.trigger("zoom-start")}function i(n){if(e.drag_event)return;const i=(new Date).getTime();e.set_zoom_axis(n.sourceEvent[e.zoom_y_key],n);e.scale_axis(e.zoom_axis,n.transform.k,n);e.fast_draw();if(e.debug){console.log("zooming");e.debug_data.time["zoom"]=t.elapsed_time(i);e.debug_data.zoom["zX"]=t.round(e.zoom_x);e.debug_data.zoom["zY"]=t.round(e.zoom_y)}}function r(){if(e.drag_event)return;e.svg.style("cursor","all-scroll");e.trigger("zoom-end");e.full_draw()}};t.SpectraViewer.prototype.initialize_drag_drop_load=function(){const t=this;this.svg.on("dragleave.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw()});this.svg.on("dragover.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw();t.flash("Drop Bayesil JSON File...")});this.svg.on("drop.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw();const n=e.dataTransfer.files[0];t.flash('Loading 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i=i=>{e.zoom_rect.origin=[i.x,i.y];e.zoom_rect.translated_origin=e.absolute_to_translated_context(t.pixel(e.zoom_rect.origin[0]),t.pixel(e.zoom_rect.origin[1]));e.zoom_rect.r=n.append("rect").attr("id","zoom-rect").attr("style","fill:blue;fill-opacity:0.1;").attr("x",e.zoom_rect.origin[0]).attr("y",e.zoom_rect.origin[1]).attr("width",1).attr("height",1)};const r=t=>{e.zoom_rect.r.attr("x",Math.min(e.zoom_rect.origin[0],t.x)).attr("y",Math.min(e.zoom_rect.origin[1],t.y)).attr("width",Math.abs(t.x-e.zoom_rect.origin[0])).attr("height",Math.abs(t.y-e.zoom_rect.origin[1]))};const s=n=>{const i=(t,e)=>{return t-e};const r=e.absolute_to_translated_context(t.pixel(n.x),t.pixel(n.y));if(n.x!==e.zoom_rect.origin[0]&&n.y!==e.zoom_rect.origin[1]){e.move_to([[e.zoom_rect.translated_origin[0],r[0]].sort(i),[e.zoom_rect.translated_origin[1],r[1]].sort(i)],500)}e.zoom_rect.r.remove()};return{start:i,drag:r,end:s}}})(JSpectraViewer);(function(t){const e=function(){const 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o=Number.POSITIVE_INFINITY;t.x.concat(e).forEach(t=>{if(t>i)i=t});t.x.forEach(t=>{if(t<r)r=t});t.y.concat(e).forEach(t=>{if(t>s)s=t});
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e=function(t){if(t===undefined){t={x:[],y:[],z:[]}}if(t instanceof Array){t=n(t)}if(t.z.length!=t.x.length*t.y.length){throw new Error("z length must be divisible by x and y length!")}this.x=t.x;this.y=t.y;this.z=t.z};e.prototype.length=function(){return this.x.length};e.prototype.asArray=function(){let t=[];let e;for(let n=0,i=this.length();n<i;n++){e={x:this.x[n],y:this.y[n],z:this.z[n]};t.push(e)}return t};let n=function(t){let e=[],n=[],i=[];let r=0;const s=t.length;for(;r<s;r++){e.push(t[r].x);n.push(t[r].y);i.push(t[r].z)}let o={x:e,y:n,z:i};return o};t.SVData2D=e})(JSpectraViewer);(function(t){path_id=0;const e=function(e,n){e=e||{};this.meta=n||{};this.lineWidth=t.default_for(e.lineWidth,1);this.color=t.default_for(e.color,"black");this.visible=t.default_for(e.visible,true);this.dash=t.default_for(e.dash,[]);this.fill=e.fill;this.path_id()};e.prototype.peaks=function(){return new t.SVSet};e.prototype.path_id=function(){const t=n();this.path_id=function(){return t};return t};const n=function(){return"path-id-"+path_id++};e.prototype.attr=function(t){const e=Object.keys(t);for(let n=0,i=e.length;n<i;n++){this[e[n]]=t[e[n]]}return this};e.prototype.display_settings=function(t){if(t){return this.attr(t)}else{return{color:this.color,fill:this.fill,lineWidth:this.lineWidth,visible:this.visible,dash:this.dash}}};e.prototype.data_for_draw=function(e,n,i,r){let s;const o=this.xy_data!=undefined;if(this.phasing&&o&&this.xy_data.yi!=undefined){let t;const e=[];const n=this.xy_data.length();for(let i=0;i<n;i++){t=Math.PI*(1*this.ph0+1*(n-i-1)*this.ph1/n)/180;e.push(Math.cos(t)*this.xy_data.y[i]+Math.sin(t)*this.xy_data.yi[i])}s={x:this.xy_data.x,y:e}}else if(i&&this.peaks().length>0||!o&&this.peaks().length>0){if(!r)r=1;const n=e.x.range_diff()/t.pixel_ratio/r;const i=r>1;s=t.xy_from_peaks(this.peaks(),n,e.x.domain()[0],e.x.domain()[1],i)}else if(o){s=n?this.simple_xy_data:this.xy_data}else{s={x:[0],y:[0]};console.error("No data or Peaks for SVPath:")}return s};e.prototype.draw=function(e,n,i,r,s){if(this.visible){const o=this.data_for_draw(n,i,r,s);const a=10;const l=t.index_of_value(o.x,n.x.domain()[0],false);const c=t.index_of_value(o.x,n.x.domain()[1],true);e.translate(.5,.5);e.beginPath();const u=this.fill?n.y(0)-a:n.y(o.y[l])-a;e.moveTo(n.x(o.x[l]),u);for(let t=l;t<=c;t++){e.lineTo(n.x(o.x[t]),n.y(o.y[t])-a)}if(this.fill){e.lineTo(n.x(o.x[c]),n.y(0)-a);e.fillStyle=this.fill;e.fill()}e.lineWidth=t.default_for(this.lineWidth,1);e.strokeStyle=this.color;e.setLineDash(this.dash);e.stroke();e.translate(-.5,-.5)}};t.SVPath=e})(JSpectraViewer);(function(t){plot_id=0;const e=function(e,n){e=e||{};this.meta=n||{};this.dotSize=t.default_for(e.dotSize,1);this.color=t.default_for(e.color,"black");this.visible=t.default_for(e.visible,true);this.plot_id()};e.prototype.plot_id=function(){let t=n();this.path_id=function(){return t};return t};const n=function(){return"plot-id-"+plot_id++};e.prototype.attr=function(t){const e=Object.keys(t);let n=0;const i=e.length;for(;n<i;n++){this[e[n]]=t[e[n]]}return this};e.prototype.display_settings=function(t){if(t){return this.attr(t)}else{return{color:this.color,fill:this.fill,lineWidth:this.lineWidth,visible:this.visible,dash:this.dash}}};e.prototype.sum=function(t){return t.reduce((t,e)=>t+e)};e.prototype.mean=function(t){return this.sum(t)/t.length};e.prototype.stddev=function(t){const e=this.mean(t);const n=function(t,n){return t+(n-e)*(n-e)};return Math.sqrt(t.reduce(n,0)/t.length)};e.prototype.find_peaks=function(t,e){const n=Array(t.length).fill(0);let i=this.stddev(t);let r=this.mean(t);for(let s=0;s<t.length;s++){if(t[s]>r+i*e){n[s]=1}else if(t[s]<r-i*e){n[s]=-1}}return n};e.prototype.data_for_draw=function(){let t;const e=this.xyz_data!=undefined;if(e){return{x:this.xyz_data.x,y:this.xyz_data.y,z:this.xyz_data.z}}else{t={x:[0],y:[0],z:[0]};console.log("No data or Peaks for SVPath:");console.log(this);return t}};e.prototype.draw=function(e,n,i,r,s,o){let a=t=>{t.forEach(t=>{if(t.coordinates.length==0)return;
445t.coordinates.forEach(t=>{e.beginPath();t.forEach(t=>{t.forEach(t=>{const i=n.x.range();const r=n.y.range();let s=n.x(this.original_scale.x.invert(t[0]));let o=n.y(this.original_scale.y.invert(t[1]));if(s<i[1]){s=i[1]}else if(s>i[0]){s=i[0]}if(o<r[0]){o=r[0]}else if(o>r[1]){o=r[1]}e.lineTo(s,o)})});e.stroke()})})};if(this.visible){let l=this;let c=this.data_for_draw();if(!this.original_scale){this.original_scale=new t.SVScale;this.original_scale.x.domain(n.x.domain());this.original_scale.y.domain(n.y.domain());this.original_scale.x.range(n.x.range());this.original_scale.y.range(n.y.range())}if(!this.old_threshold||this.old_threshold!=o){this.old_threshold=o;const t=l.find_peaks(c.z,o);let e=[];let i=[];for(let r=0;r<c.y.length;r++){for(let s=0;s<c.x.length;s++){if(t[c.x.length*r+s]===-1){i.push([n.x(c.x[s]),n.y(c.y[r])])}else if(t[c.x.length*r+s]===1){e.push([this.original_scale.x(c.x[s]),this.original_scale.y(c.y[r])])}}}this.posContours=d3v7.contourDensity().size([c.x.length*3,c.y.length*3]).bandwidth(10)(e);this.negContours=d3v7.contourDensity().size([c.x.length*3,c.y.length*3]).bandwidth(10)(i)}e.strokeStyle="blue";a(this.posContours);e.strokeStyle="red";a(this.negContours);if(!i){let t={};let i={};for(let e=0;e<c.y.length;e++){let n=c.y[e];for(let r=0;r<c.x.length;r++){let s=c.x[r];let o=c.z[c.x.length*e+r];if(t[s]===undefined){t[s]=0}if(i[n]===undefined){i[n]=0}t[s]+=o;i[n]+=o}}let o=Object.values(i);let a=Object.values(t);let l=Math.max(...a);let u=Math.min(...a);let h=Math.max(...o);let f=Math.min(...o);const d=l-u;const p=h-f;Object.keys(t).map(function(e,n){t[e]=(t[e]-u)/d});Object.keys(i).map(function(t,e){i[t]=(i[t]-f)/p});let m=d3v7.scaleLinear().domain([u,l]).range([0,-(r*.12)+10]);let g=d3v7.scaleLinear().domain([f,h]).range([0,-(s[0]*.08)+10]);e.lineWidth=1;e.strokeStyle="blue";e.beginPath();for(let t=0;t<=c.x.length;t++){const i=n.x(c.x[t]);const r=n.x.range();if(i>=r[1]&&i<=r[0]){e.lineTo(i,m(a[t]))}}e.stroke();e.beginPath();for(let t=0;t<=c.y.length;t++){const i=n.y(c.y[t]);const r=n.y.range();if(i>=r[0]&&i<=r[1]){e.lineTo(g(o[t]),n.y(c.y[t]))}}e.stroke()}}};t.SVDot=e})(JSpectraViewer);(function(t){function e(t,e,n,i){this.x=t;this.y=e;this.width=n;this.height=i}e.prototype.contains_pt=function(t,e){return t>=this.x&&t<=this.x+this.width&&e>=this.y&&e<=this.y+this.height};function n(e){const n=this;this.sv=e;this.max_label_length=0;this.margin_top=t.pixel(5);this.margin_side=t.pixel(10);this.key_label_space=t.pixel(5);this.key_width=t.pixel(10);this.line_width=t.pixel(3);this.text_height=t.pixel(18);this.items=[];e.svg.on("click.legend",function(t){let i=e.mouse(t,e.canvas);for(let t=0,r=n.items.length;t<r;t++){let r=n.items[t];if(r.rect.contains_pt(i[0],i[1])&&e.legend_show){r.path.visible=!r.path.visible;e.full_draw()}}})}n.prototype.bottom=function(){const e=(this.sv.zoombox.visible?t.pixel(this.sv.zoombox.height):0)+this.margin_top;return this.sv.legend_show?this.offset_y:e};n.prototype.update=function(){const n=this.sv;const i=n.context;this.offset_y=(n.zoombox.visible?t.pixel(n.zoombox.height):0)+this.margin_top;const r=this.margin_side;i.font=n.adjust_font(1,"monospace");this.items=[];for(let s=0;s<n.spectra().length;s++){const o=n.spectra()[s];const a=new t.SVLegendItem(this);const l=new e;l.y=this.offset_y;l.height=this.text_height;l.width=this.key_width+this.key_label_space+i.measureText(o.name).width;l.x=n.axis_x_reverse?r:t.pixel(n.width)-r-l.width;a.rect=l;a.path=o;this.offset_y+=this.text_height;this.items.push(a);this.max_label_length=Math.max(a.path.name.length,this.max_label_length)}};n.prototype.draw=function(){const t=this.sv;const e=t.context;e.save();e.textAlign="left";e.textBaseline="middle";e.font=t.adjust_font(1,"monospace");for(let t=0;t<this.items.length;t++){this.items[t].draw(this.max_label_length)}e.restore()};function i(t,e,n){this.legend=t;this.sv=t.sv;this.path=e;this.rect=n}i.prototype.key_x1=function(){return this.sv.axis_x_reverse?this.rect.x:this.rect.x+this.rect.width-this.legend.key_width};i.prototype.key_x2=function(){return this.key_x1()+this.legend.key_width};i.prototype.key_y=function(){return this.rect.y+this.rect.height/2};i.prototype.label_x=function(){return this.sv.axis_x_reverse?this.rect.x+this.legend.key_width+this.legend.key_label_space:this.rect.x};i.prototype.draw=function(t){let e=this.rect;this.sv.context.clearRect(e.x,e.y,e.width,e.height);if(this.path.visible)this.draw_key();this.draw_label(t)};i.prototype.draw_key=function(){let t=this.sv.context;t.beginPath();t.moveTo(this.key_x1(),this.key_y());t.lineTo(this.key_x2(),this.key_y());t.lineWidth=this.legend.line_width;t.strokeStyle=this.path.color;t.setLineDash(this.path.dash);t.stroke()};i.prototype.draw_label=function(t){this.sv.context.fillStyle=this.path.visible?"black":"#999";let e=this.path.visible?"\u2612":"\u2610";let n=`${this.path.name.padEnd(t)} ${e}`;this.sv.context.fillText(n,this.label_x(),this.key_y())};t.SVLegend=n;t.SVLegendItem=i})(JSpectraViewer);(function(t){function e(e,n={}){const i=this;this.sv=e;this.highlighted_label;this.point_gap=t.default_for(n.point_gap,t.pixel(12));this.label_color=t.default_for(n.label_color,"#5555DD");this.visible=t.default_for(n.visible,true);this.hover=t.default_for(n.hover,true);this.labels=new t.SVSet;this.visible_labels=new t.SVSet;e.svg.on("mousedown.label",function(){if(i.highlighted_label&&i.hover){e.trigger("label-click",i.highlighted_label)}})}e.prototype.get=function(t){return this.labels.get(t)};e.prototype.update=function(){const e=this.sv;const n=e.labels?e.labels.get():new t.SVSet;
445e.spectra().forEach(function(t){if(t.visible&&t.active&&t.labels){n.push.apply(n,t.labels.get())}});this.labels=n;let i=this.reduce_labels_by_view();i=this.reduce_labels_by_height(i);i=this.adjust_labels(i);this.visible_labels=i};e.prototype.rect_for_label=function(e){const n=this.sv;let i,r,o;const a=n.scale.x(e.x);const l=n.scale.y(e.y);const c=n.context.measureText(e.text).width;const u=t.pixel(e.font_size);if(e.vertical){r=a-u/2;o=l-c-this.point_gap;i=new s(r,o,u,c)}else{r=a-c/2;o=l-u-this.point_gap;i=new s(r,o,u,c)}return i};e.prototype.reduce_labels_by_view=function(t){if(!t)t=this.labels;const e=this.sv.scale;return t.filter(function(t){return t.x>e.x.min()&&t.x<e.x.max()&&t.y<e.y.max()})};e.prototype.reduce_labels_by_height=function(e){if(!e)e=this.labels;const n=this.sv.scale;const i=6;const r=new t.SVSet;let s=0;const o=e.length;for(;s<o;s++){label=e[s];label.font_size=i;label.rect=this.rect_for_label(label);label.adjust_rect(r);if(label.stack_level<3){r.push(label)}}return r};e.prototype.adjust_labels=function(e){const n=this.sv;let i,r,s,o;const a=1;const l=t.pixel(2);const c=t.pixel(12);const u=13;const h=8;const f=u-h;let d=u;let p=h;const m=n.scale;const g=n.context;g.save();let _=true;while(_){_=false;adjusted_labels=new t.SVSet;g.font=t.pixel(d)+"px Arial";p=h+Math.round(f*n.zoom_x/n.zoom_max);let i=0;const s=e.length;for(;i<s;i++){r=e[i];r.font_size=d;r.rect=this.rect_for_label(r);r.adjust_rect(adjusted_labels);if(r.stack_level>a&&d>p){_=true;d-=1;break}else{adjusted_labels.push(r)}}}return e};e.prototype.label_over_spectra=function(e,n,i){const r=this.sv;const s=[];for(let t=0,n=e.rect.width;t<n;t++){s.push(r.scale.x.invert(e.rect.x+t))}const o=r.scale.y.invert(e.rect.bottom());let a=false;for(let e=0,i=s.length;e<i;e++){if(o<t.sum_of_peaks(s[e],n)){a=true;break}}return a};e.prototype.draw=function(){if(!this.visible){return}const e=this.sv;const n=e.context;const i=e.scale;let r;const s=t.pixel(2);n.save();this.update();const o=this.visible_labels;for(let e=0,a=o.length;e<a;e++){r=o[e];const a=i.x(r.x);const l=i.y(r.y)-s;const c=r.rect.bottom()+s;n.beginPath();n.moveTo(a,l);n.lineTo(a,c);n.strokeStyle="#999999";n.lineWidth=t.pixel(.5);n.stroke()}n.fillStyle=this.label_color;for(let t=0,e=o.length;t<e;t++){r=o[t];if(r===this.highlighted_label){n.font="bold "+n.font}else{n.font=n.font.replace("bold ","")}n.textBaseline="top";if(r.vertical){n.textAlign="right";n.save();n.translate(r.rect.x,r.rect.y);n.rotate(-Math.PI/2);n.fillText(r.text,0,0);n.restore()}else{n.textAlign="left";n.fillText(r.text,r.rect.x,r.rect.y)}}n.restore()};e.prototype.check_hover=function(){const t=this.sv;let e;if(this.hover){const n=t.scale.x(t.mx);const i=t.scale.y(t.my);const r=this.highlighted_label;let s;let o=0;const a=this.visible_labels.length;for(;o<a;o++){e=this.visible_labels[o];if(e.rect.contains_pt(n,i)){s=e;break}}if(r!=s){this.highlighted_label=s;this.sv.trigger("click-start");t.full_draw()}if(this.highlighted_label){t.svg.style("cursor","pointer")}else{t.svg.style("cursor","move")}}};function n(e){e=e||{};this.spectrum=e.spectrum;this.labels=new t.SVSet}n.prototype.get=function(t){return this.labels.get(t)};n.prototype.add=function(t,e,n){this.labels.push(new i(this,t,e,n))};n.prototype.add_peaks=function(){if(this.spectrum){const e=this.spectrum.peaks();let n=0;const i=e.length;for(;n<i;n++){const i=e[n];const r=t.sum_of_peaks(i.center,i.spectrum().peaks());this.add({x:i.center,y:r,text:i.label()})}}};n.prototype.update_peaks=function(){if(this.spectrum){this.labels=new t.SVSet;this.add_peaks()}};label_id=0;function i(e,n,i,r){n=n||{};display_defaults={vertical:true,font_size:12};i=t.merge(display_defaults,n.display,i);this.meta=t.merge(n.meta,r);this.label_set=e;this.vertical=i.vertical;this.font_size=i.font_size;this.text=n.text;this.x=n.x;this.y=n.y;this.stack_level=0;this.label_id()}i.prototype.label_id=function(){const t=r();this.label_id=function(){return t};return t};const r=function(){return"label-id-"+label_id++};i.prototype.adjust_rect=function(e){const n=true;let i=0;while(this.overlap(e)){this.rect.y-=t.pixel(this.font_size)*2;i+=1}this.stack_level=i};i.prototype.overlap=function(t){return this.rect.overlap(t.map(function(t){return t.rect}))};function s(t,e,n,i){this.x=t;this.y=e;this.width=n;this.height=i}s.prototype.bottom=function(){return this.y+this.height};s.prototype.top=function(){return this.y};s.prototype.left=function(){return this.x};s.prototype.right=function(){return this.x+this.width};s.prototype.overlap=function(e){const n=t.pixel(4);const i=this;let r=false;let s=0;const o=e.length;for(;s<o;s++){const t=e[s];if(i.x<=t.right()&&t.x<=i.right()+n&&i.y<=t.bottom()&&t.y<=i.bottom()){r=true;break}else{r=false}}return r};s.prototype.contains_pt=function(t,e){return t>=this.x&&t<=this.x+this.width&&e>=this.y&&e<=this.y+this.height};t.SVAnnotation=e;t.SVLabelSet=n;t.SVLabel=i})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this.id=e.id;this.name=e.name||this.id;this.tolerance=e.tolerance;this.noise;this.active=true;this.xy_data=new t.SVData;this.simple_xy_data=new t.SVData;this.labels=new t.SVLabelSet({spectrum:this});this._compounds=new t.SVSet;if(e.compounds){e.compounds.forEach(function(e){r.add_compound(new t.Compound(e))})}else if(e.peak_list){const n={clusters:[{peaks:e.peak_list}]};r.add_compound(new t.Compound(n))}if(r.compounds().present()){const n=t.default_for(e.number_of_points,1e4);const i=t.default_for(e.min_x,-1);const s=t.default_for(e.max_x,10);if(!e.xy_line){const e=t.xy_from_peaks(r.peaks(),n,i,s);r.add_xy_line(e)}}if(e.xy_line){r.add_xy_line(e.xy_line)}
445if(e.labels){e.labels.forEach(function(t){r.labels.add(t)})}}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Spectrum"};e.prototype.add_compound=function(t){this._compounds.push(t);t._spectrum=this};e.prototype.update=function(){const e=this._sv;const n=t.xy_from_peaks(this.peaks(),this.xy_data.length(),e.boundary.x.min(),e.boundary.x.max());this.add_xy_line(n);e.zoombox.update()};e.prototype.compounds=function(t){return this._compounds.get(t)};e.prototype.add_xy_line=function(e){this.xy_data=new t.SVData(e);this.noise=this.calculate_noise();const n=this.tolerance||this.noise;this.simple_xy_data=this.xy_data.simplify(n,true)};e.prototype.calculate_noise=function(){const t=[-.05,-.04];const e=this.xy_data.index_of(t[0]);const n=this.xy_data.index_of(t[1]);const i=this.xy_data.y.slice(e,n);return(d3v7.max(i)-d3v7.min(i)).toPrecision(2)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._compounds.length;for(;i<r;i++){n.merge(this._compounds[i].clusters())}return n.get(e)};e.prototype.peaks=function(e){const n=new t.SVSet;this.compounds().forEach(function(t){t.clusters().forEach(function(t){n.merge(t.peaks())})});return n.get(e)};Object.defineProperties(e.prototype,{active:{get:function(){return this._active},set:function(t){this._active=t;const e=this._sv;if(e){e.reset_boundaries();e.all_spectra().each(function(){if(this.active){e.boundary.update(this.xy_data);e.scale.update(this.xy_data)}});e.zoombox.update();e.legend.update()}}}});t.Spectrum=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVDot.call(this,n,i);this._compounds=new t.SVSet;this.id=e.id;this.name=e.name||this.id;this.active=true;this.xyz_data=new t.SVData2D;if(e.compounds){e.compounds}r.add_xyz_plot(e.json_data);if(e.labels){e.labels.forEach(function(t){r.labels.add(t)})}}t.inherits(e,t.SVDot);e.prototype.toString=function(){return"Spectrum2D"};e.prototype.add_compound=function(t){this._compounds.push(t);t._spectrum=this};e.prototype.add_xyz_plot=function(e){this.xyz_data=new t.SVData2D(e)};e.prototype.compounds=function(t){return this._compounds.get(t)};Object.defineProperties(e.prototype,{active:{get:function(){return this._active},set:function(t){this._active=t;const e=this._sv;if(e){e.reset_boundaries();e.all_spectra().each(function(){if(this.active){e.boundary.update(this.xy_data);e.scale.update(this.xy_data)}});e.zoombox.update();e.legend.update()}}}});t.Spectrum2D=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this._clusters=new t.SVSet;if(e){this.id=e.id;this.name=e.name;this.concentration=e.concentration 446;this.original_concentration=e.concentration;if(e.clusters){e.clusters.forEach(function(e){r.add_cluster(new t.Cluster(e))})}}this.update()}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Compound"};e.prototype.add_cluster=function(t){this._clusters.push(t);t._compound=this};e.prototype.update=function(){this.x_min=t.peak_min(this.peaks());this.x_max=t.peak_max(this.peaks());this.xy_data=new t.SVData(t.xy_from_peaks(this.peaks(),5e3,this.x_min,this.x_max));this.simple_xy_data=this.xy_data.simplify(5e-4,true);this._clusters.order_by("center")};e.prototype.clusters=function(t){return this._clusters.get(t)};e.prototype.peaks=function(e){const n=new t.SVSet;this._clusters.forEach(function(t){n.merge(t.peaks())});return n.get(e)};e.prototype.spectrum=function(){return this._spectrum};e.prototype.intersect=function(e,n,i){const r=t.sum_of_peaks(e,this.peaks());return n<=r&&n>=0};e.prototype.display_concentration=function(){return t.round(this.concentration,1)+" \u03bcM"};e.prototype.center=function(){let t;if(this.peaks().present()){t=d3v7.mean(this.peaks(),function(t){return t.center})}return t};e.prototype.atom_assignment_nmrml=function(){if(!window.X2JS){console.log("X2JS needs to be installed to create nmrML: https://github.com/abdmob/x2js");return}const t=d3v7.format(".2f");const e=new X2JS;const n={atomAssignmentList:{multiplet:[]}};
446this.clusters().forEach(function(e){const i=[];e.peaks().forEach(function(t){i.push({_center:t.center,_amplitude:t.amplitude,_width:t.width})});const r={_center:t(e.center()),atoms:{_atomRefs:e.atom_refs.join(" ")},multiplicity:e.nmrml_multiplet_json(),peakList:{peak:i}};n.atomAssignmentList.multiplet.push(r)});let i=e.json2xml_str(n);i=i.replace(/><\/peak>/g,"/>");return i};t.Compound=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this._peaks=new t.SVSet;this._atoms=new t.SVSet;this.lower_bound=t.number(e.lower_bound);this.upper_bound=t.number(e.upper_bound);this.weight=t.number(e.weight);this.protons=t.number(e.protons);if(e.peaks){e.peaks.forEach(function(e){r.add_peak(new t.Peak(e))})}}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Cluster"};e.prototype.add_peak=function(t){this._peaks.push(t);this.multiplet_type=undefined;t._cluster=this};e.prototype.update=function(){this._peaks.order_by("center")};e.prototype.peaks=function(t){return this._peaks.get(t)};e.prototype.compound=function(){return this._compound};e.prototype.spectrum=function(){return this.compound().spectrum()};e.prototype.center=function(){let t;if(this.peaks().present()){t=d3v7.mean(this.peaks(),function(t){return t.center})}return t};e.prototype.atoms=function(t){return this._atoms.get(t)};e.prototype.determine_multiplet_type=function(){const t=this;const e=t.peaks();let r="m";if(e.length==1){r="s"}else if(e.length==2){r="d"}else if(e.length==3){r="t"}else if(e.length==4){if(n(e)){r="dd"}else{r="q"}}else if(e.length==5){r="quint"}else if(e.length==6){if(i(e)){r="td"}else{r="dt"}}return r};const n=function(t){const e=.1;const n=t.map(function(t){return t.amplitude});const i=d3v7.max(n);const r=i*(1-e);const s=i*(1+e);return n.every(function(t){return t>=r&&t<=s})};const i=function(t){const e=t.map(function(t){return t.amplitude});const n=d3v7.min(e.slice(2,3));const i=e.slice(0,1).concat(e.slice(4,5));return i.every(function(t){return t<=n})};e.prototype.nmrml_multiplet_json=function(){let t;switch(this.multiplet_type){case"s":t={_cvRef:"NMRCV",_accession:"NMR:1000194",_name:"singlet feature"};break;case"d":t={_cvRef:"NMRCV",_accession:"NMR:1000184",_name:"doublet feature"};break;case"t":t={_cvRef:"NMRCV",_accession:"NMR:1000185",_name:"triplet feature"};break;case"q":t={_cvRef:"NMRCV",_accession:"NMR:1000186",_name:"quatruplet feature"};break;case"dd":t={_cvRef:"NMRCV",_accession:"NMR:1000192",_name:"doublet of doublets feature"};break;case"quint":t={_cvRef:"NMRCV",_accession:"NMR:1000195",_name:"quintet feature"};break;case"dt":t={_cvRef:"NMRCV",_accession:"NMR:1000196",_name:"doublet of triplets feature"};break;case"td":t={_cvRef:"NMRCV",_accession:"NMR:1000197",_name:"triplet of doublets feature"};break;case"m":t={_cvRef:"NMRCV",_accession:"NMR:1400305",_name:"multiplet feature"};break;default:t={_cvRef:"NMRCV",_accession:"NMR:1400305",_name:"multiplet feature"}}return t};Object.defineProperties(e.prototype,{multiplet_type:{get:function(){if(!this._multiplet_type){this._multiplet_type=this.determine_multiplet_type()}return this._multiplet_type},set:function(t){this._multiplet_type=t}},atom_refs:{get:function(){if(this.atoms().length>0){return this.atoms().map(function(t){return t.id})}else{return this._atom_refs||[]}},set:function(t){this._atom_refs=t}},dir_dim_atom_refs:{get:function(){return this.dir_dim_atom_refs},set:function(t){this._dir_dim_atom_refs=t}},indir_dim_atom_refs:{get:function(){return this.indir_dim_atom_refs},set:function(t){this._indir_dim_atom_refs=t}}});t.Cluster=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this.center=t.number(e.center);this.original_amplitude=t.number(e.original_amplitude);this.amplitude=t.number(e.amplitude);this.width=t.number(e.width)}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Peak"};e.prototype.set_amplitude=function(t){if(t<=0)t=1e-5;this.amplitude=t};e.prototype.set_center=function(t){this.center=t};e.prototype.update=function(){};e.prototype["delete"]=function(){const e=this;const n=this.cluster();const i=this.compound();const r=this.spectrum();const s=r._sv;const o=n._peaks.filter(function(t){return t!=e});n._peaks=new t.SVSet(o);n.multiplet_type=undefined;
446if(n.peaks().empty()){const e=i._clusters.filter(function(t){return t!=n});i._clusters=new t.SVSet(e)}if(i.peaks().empty()){const e=r._compounds.filter(function(t){return t!=i});r._compounds=new t.SVSet(e)}if(r.peaks().empty()){const e=s._spectra.filter(function(t){return t!=r});s._spectra=new t.SVSet(e)}};e.prototype.peaks=function(){return new t.SVSet(this)};e.prototype.cluster=function(){return this._cluster};e.prototype.compound=function(){return this.cluster().compound()};e.prototype.spectrum=function(){return this.compound().spectrum()};e.prototype.label=function(){return this.center.toFixed(3)};t.Peak=e})(JSpectraViewer);(function(t){function e(n,i){t.SVPath.call(this);const r=this;this.sv=n;this.element_type=i.element_type;this.allow_multiselect=t.default_for(i.allow_multiselect,true);this.allow_adjust=t.default_for(i.allow_adjust,true);this.allow_width_adjust=t.default_for(i.allow_width_adjust,true);this.allow_peak_creation=t.default_for(i.allow_peak_creation,false);this.show_bounds=t.default_for(i.show_bounds,true);this.show_indicators=t.default_for(i.show_indicators,false);this.display_info=t.default_for(i.display_info,true);this.constrain_adjust=i.constrain_adjust;this.restriction_spectrum_id=i.restriction_spectrum_id;this.possible_elements=i.possible_elements;display_defaults={fill:"rgba(150, 150, 150, 0.2)",visible:true};this.display_settings(t.merge(display_defaults,i.display));this.handle_spacer=t.pixel(10);this.handle_size=t.pixel(15);this._elements=new t.SVSet;this.initialize_selection_events();this.popup_box=this.sv.sv_wrapper.append("div").attr("class","jsv-select-popup-box").style("visibility","hidden");this.text_container=this.popup_box.append("div").attr("class","jsv-select-text-container");this.draw=function(){if(r.present()){e.prototype.draw.apply(this,arguments);r.draw_adjust_handles(arguments[0],arguments[1])}r.present()&&r.display_info?r.show_popup_box():r.hide_popup_box()}}t.inherits(e,t.SVPath);e.prototype.peaks=function(e){const n=new t.SVSet;let i=0;const r=this._elements.length;for(;i<r;i++){n.merge(this._elements[i].peaks())}return n.get(e)};e.prototype.elements=function(t){return this._elements.get(t)};e.prototype.clear=function(){this.sv.trigger("selection-clear");this._elements=new t.SVSet;this.sv.trigger("selection-empty");return this};e.prototype.add_element=function(t){this._elements.push(t);this.sv.highlight.remove();this.sv.trigger("selection-add");return this};e.prototype.remove_element=function(e){this._elements=new t.SVSet(this._elements.filter(function(t){return t!=e}));this.sv.trigger("selection-remove");if(this.empty())this.sv.trigger("selection-empty");return this};e.prototype.size=function(){return this._elements.length};e.prototype.present=function(){return this._elements.length>0};e.prototype.empty=function(){return this._elements.length==0};e.prototype.contains=function(t){return this._elements.contains(t)};e.prototype["delete"]=function(){this.peaks().each(function(){this["delete"]()});this.update();this.clear();this.sv.trigger("adjust-end");this.sv.full_draw()};e.prototype.hide_popup_box=function(){this.popup_box.style("visibility","hidden")};e.prototype.show_popup_box=function(){const e=this.highlighted_element;this.popup_box.style("width","100%");const n=this.sv.axis_x_reverse?"right":"left";this.popup_box.style(n,this.sv.axis_y_gutter+t.pixel(2)+"px");this.text_container.html(this.info_text());const i=this.text_container.node().offsetWidth+20;this.popup_box.style("visibility","visible").style("width",i+"px")};e.prototype.info_text=function(){let t="",e="",n="";const i=this.compounds();
446const r=this.clusters();const s=this.peaks();if(i.length==1){const e=i[0];t=e.name;if(e.concentration!==undefined){t+" ["+e.display_concentration()+"]"}}else{t=i.length+" compounds"}if(r.length==1){const t=r[0];e="cluster: "+t.center().toFixed(3)+" ppm"}else{e=r.length+" clusters"}if(s.length==1){const t=s[0];n="peak: "+t.center.toFixed(3)+" ppm"}else{n=s.length+" peaks"}text="<p>"+t+"</p><p>"+e+"</p><p>"+n+"</p>";return text};e.prototype.compounds=function(e){const n=new t.SVSet;this.peaks().forEach(function(t){n.push(t.compound())});return n.unique().get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;this.peaks().forEach(function(t){n.push(t.cluster())});return n.unique().get(e)};e.prototype.adjust_concentration=function(){return this.element_type=="compound"||this.constrain_adjust=="compound"};e.prototype.draw_adjust_handles=function(t,e){const n=this;const i=this.sv;let r;if(n.allow_adjust&&n.allow_width_adjust&&n.present()){const s=this.handle_spacer;const o=this.handle_size;const a=i.get_peak_domains(n.peaks(),true);const l=e.x(d3v7.min(a[0]));const c=e.x(d3v7.max(a[0]));if(i.axis_x_reverse){this.handle_min_x=l+s;this.handle_max_x=c-s-o;r=-1}else{this.handle_min_x=l-s-o;this.handle_max_x=c+s;r=1}const u=e.y(d3v7.max(a[1])/2);this.handle_y=u-o/2;t.translate(.5,.5);t.beginPath();t.strokeStyle="rgba(50, 50, 50, 0.9)";t.rect(this.handle_min_x,this.handle_y,o,o);t.rect(this.handle_max_x,this.handle_y,o,o);t.stroke();t.beginPath();t.strokeStyle="rgba(150, 150, 150, 0.5)";t.moveTo(l,u);t.lineTo(l-s*r,u);t.moveTo(c,u);t.lineTo(c+s*r,u);t.stroke();t.translate(-.5,-.5)}};e.prototype.draw_bounds=function(e,n){const i=this;const r=t.pixel(10);const s=this.sv;if(o()){const t=this.elements(1);const o=s.get_peak_domains(i.peaks(),true);const a=n.y.range()[0];const l=n.x(t.lower_bound);const c=n.x(t.upper_bound);const u=n.x(t.center());e.save();e.translate(.5,.5);e.beginPath();e.lineWidth=2;if(t.center()<t.lower_bound||t.center()>t.upper_bound){e.strokeStyle="red";e.fillStyle="red"}else{e.strokeStyle="blue";e.fillStyle="white"}e.moveTo(l,a);e.lineTo(l+r,a-r);e.lineTo(l+r,a+r);e.lineTo(l,a);e.moveTo(c,a);e.lineTo(c-r,a-r);e.lineTo(c-r,a+r);e.lineTo(c,a);e.moveTo(u,a-r);e.lineTo(u,a+r);e.fill();e.stroke();e.translate(-.5,-.5);e.restore()}function o(){const e=i.elements(1);return i.show_bounds&&i.size()==1&&typeof e.center=="function"&&t.isNumeric(e.center())&&t.isNumeric(e.lower_bound)&&t.isNumeric(e.upper_bound)}};e.prototype.draw_indicators=function(e,n){const i=this;const r=t.pixel(10);const s=this.sv;if(i.show_indicators){const s=n.y.range()[0];e.save();e.translate(.5,.5);i.elements().forEach(function(i){let o;if(typeof i.center=="function"){o=i.center()}else{o=i.center}if(o!==undefined){o=n.x(o);e.beginPath();e.lineWidth=t.pixel(2);e.strokeStyle="green";e.fillStyle="green";e.moveTo(o,s-r);e.lineTo(o,s+r);e.fill();e.stroke()}});e.translate(-.5,-.5);e.restore()}};e.prototype.mouse_in_handle=function(){const t=this;const e=this.sv;let n;if(t.allow_adjust&&t.allow_width_adjust&&t.present()){const t=e.scale.x(e.mx);const i=e.scale.y(e.my);if(i>this.handle_y&&i<this.handle_y+this.handle_size){if(t>this.handle_max_x&&t<this.handle_max_x+this.handle_size)n="left";if(t>this.handle_min_x&&t<this.handle_min_x+this.handle_size)n="right"}}return n};e.prototype.mouse_in_selection=function(){const e=this;const n=this.sv;if(e.present()){const i=n.scale.x(n.mx);const r=n.scale.y(n.my);const s=t.sum_of_peaks(n.mx,e.peaks());return n.my<=s&&n.my>=0}};e.prototype.update=function(){const e=new t.SVSet;this.constrained_peaks().forEach(function(t){e.push(t,t.cluster(),t.compound(),t.spectrum())});e.unique().forEach(function(t){t.update()})};e.prototype.constrained_peaks=function(){const e=this;let n;if(e.constrain_adjust){n=new t.SVSet;e.peaks().forEach(function(t){if(t[e.constrain_adjust]){n.merge(t[e.constrain_adjust]().peaks())}});n=n.unique()}else{n=e.peaks()}return n};e.prototype.initialize_selection_events=function(){const e=this.sv;const n=this;let i,r,s,o,a,l,c;let u,h,f,d,p;let m,g;let _;e.svg.on("mousedown.selection",function(t){_=false;const i=t.x;const r=t.y;if(w(t)&&n.allow_adjust){k();e.svg.on("mousemove.fit",function(){S()});e.svg.on("mouseup.fit",function(){M();e.svg.on("mousemove.fit",null);
446e.svg.on("mouseup.fit",null)})}else if(b(t)&&n.allow_multiselect){T();e.svg.on("mousemove.fit",function(){C()});e.svg.on("mouseup.fit",function(){A();e.svg.on("mousemove.fit",null);e.svg.on("mouseup.fit",null)})}else{e.svg.on("mouseup.selection",function(t){if(i==t.x&&r==t.y){if(v(t)){E()}else if(!_){n.clear()}}e.svg.on("mouseup.selection",null)})}});function v(t){return n.allow_peak_creation&&(e.create_peak_mode||e.keyval()=="65"||t.metaKey)}function y(t){return n.allow_multiselect&&(e.keyval()=="83"||t.shiftKey)}function b(t){return y(t)&&!n.mouse_in_handle()&&!x()}function x(){return e.find_element_mouse_over(n.element_type,n.restriction_spectrum_id,n.possible_elements,n.visible_only)}function w(t){if(n.mouse_in_handle())return true;if(v(t))return false;let i;const r=x();const s=n.mouse_in_selection();if(r||s){if(y(t)){if(n.contains(r)){n.remove_element(r);i=false;_=true}else if(!s){n.add_element(r);i=true}}else if(!s){n.clear();n.add_element(r);i=true;_=true}else{i=true}e.fast_calc_draw()}else{i=false}return i}function k(){i=d3v7.event.x;r=d3v7.event.y;c=n.mouse_in_handle();e.svg.style("cursor","grabbing")}function S(){d3v7.event.stopPropagation();_=true;s=d3v7.event.x-i;o=d3v7.event.y-r;i=d3v7.event.x;r=d3v7.event.y;a=e.pixels_to_units_of_axis("x",s);l=e.pixels_to_units_of_axis("y",o);if(c){const t=c=="right"?1:-1;n.peaks().forEach(function(e){e.width=e.width-t*a*2;if(e.width<1e-5)e.width=1e-5})}else{if(n.adjust_concentration()){n.compounds().forEach(function(t){t.orig_amplitude=d3v7.max(t.peaks(),function(t){return t.amplitude})})}const t=n.constrained_peaks();m=d3v7.max(t,function(t){return t.amplitude});if(m<=0)m=1e-5;t.forEach(function(t){g=t.amplitude+l/m*t.amplitude;t.set_amplitude(g)});n.peaks().forEach(function(t){t.set_center(t.center+a)});if(n.adjust_concentration()){n.compounds().forEach(function(t){const e=d3v7.max(t.peaks(),function(t){return t.amplitude});t.concentration=t.concentration*e/t.orig_amplitude})}}e.trigger("adjust");e.fast_calc_draw()}function M(){n.update();e.svg.style("cursor","grab");e.trigger("adjust-end",n.compounds());e.full_draw()}function T(){h=new t.SVSet;const n=d3v7.mouse(e.canvas);d=n[0];p=n[1];u=e.svg.append("rect").attr("class","select-box").attr("x",d).attr("y",p).attr("width",0).attr("height",0)}function C(){d3v7.event.stopPropagation();_=true;const i=d3v7.mouse(e.canvas);x_new=i[0];y_new=i[1];const r=d3v7.min([d,x_new]);const s=d3v7.min([p,y_new]);const o=Math.abs(x_new-d);const a=Math.abs(y_new-p);u.attr("x",r).attr("y",s).attr("width",o).attr("height",a);const l=D(r,s,o,a);l.forEach(function(t){if(!n.contains(t)){n.add_element(t);h.push(t)}});h=new t.SVSet(h.filter(function(t){if(!l.contains(t)){n.remove_element(t);return false}return true}));e.fast_draw()}function A(){u.remove();e.full_draw()}function D(i,r,s,o){const a=new t.SVSet;let l;const c=e.scale.y.invert(t.pixel(r+o));const u=e.elements(n.element_type,n.restriction_spectrum_id,n.possible_elements,n.visible_only);let h=0;const f=u.length;for(;h<f;h++){const n=u[h];for(let r=0;r<s;r++){l=e.scale.x.invert(t.pixel(i+r));if(c<t.sum_of_peaks(l,n.peaks())){a.push(n);break}}}return a}function E(){let i,r;if(n.present()){i=n.peaks(1).cluster();r=d3v7.mean(n.peaks(),function(t){return t.width})}else{let s;if(n.restriction_spectrum_id){s=e.spectra(n.restriction_spectrum_id)}else{s=e.spectra().filter(function(t){return t.compounds().present()})[0]}i=new t.Cluster;s.compounds(1).add_cluster(i);if(s.peaks().present()){r=d3v7.mean(s.peaks(),function(t){return t.width})}else{r=.003}}const s=new t.Peak({width:r,center:0});i.add_peak(s);const o=e.mouse(e.canvas);s.set_center(e.scale.x.invert(o[0]));s.set_amplitude(e.scale.y.invert(o[1]));e.trigger("adjust-peak-created",s);if(n.element_type=="peak"){n.add_element(s)}else if(n.empty()&&n.element_type=="cluster"){n.add_element(i)}else if(n.empty()&&n.element_type=="compound"){n.add_element(i.compound())}M()}};t.SVSelection=e})(JSpectraViewer);(function(t){function e(e,n){this.sv=e;this.element_type=n.element_type;this.restriction_spectrum_id=n.restriction_spectrum_id;this.possible_elements=n.possible_elements;this.visible_only=t.default_for(n.visible_only,true);this.text_display=t.default_for(n.text_display,true);display_defaults={lineWidth:3,visible:true};this.display=t.merge(display_defaults,n.display);this.popup_box=this.sv.sv_wrapper.append("div").attr("class","jsv-highlight-popup-box").style("visibility","hidden");this.text_container=this.popup_box.append("div").attr("class","jsv-highlight-text-container")}e.prototype.hover=function(){const t=this.sv;if(this.element_type){const e=this.highlighted_element;let n=t.find_element_mouse_over(this.element_type,this.restriction_spectrum_id,this.possible_elements,this.visible_only);if(t.selection.mouse_in_selection()||t.selection.mouse_in_handle()){n=undefined}if(e!=n){this.highlighted_element=n;if(e){e.display_settings(this.saved_display_settings);this.hide_popup_box()}if(n){this.saved_display_settings=n.display_settings();n.display_settings(this.display);this.show_popup_box()}t.full_draw()}}};e.prototype.remove=function(){if(this.highlighted_element){this.highlighted_element.display_settings(this.saved_display_settings);this.highlighted_element=undefined;this.hide_popup_box()}};e.prototype.hide_popup_box=function(){this.sv.trigger("highlight-end");this.popup_box.style("visibility","hidden")};e.prototype.show_popup_box=function(){const t=this.highlighted_element;let e="";if(this.text_display===true){e=this.default_text()}else if(typeof this.text_display=="string"){e=this.parsed_text()}this.sv.trigger("highlight-start");if(this.text_display){this.popup_box.style("width","100%");this.text_container.html(e);const t=this.text_container.node().offsetWidth+20;const n=this.sv.menu.visible()?this.sv.menu.height()+5:15;this.popup_box.style("visibility","visible").style("top",n+"px").style("width",t+"px")}};e.prototype.default_text=function(){let t="";if(this.element_type=="peak"){t="Peak: "+this.highlighted_element.center.toFixed(3)+" ppm"}else if(this.element_type=="cluster"){t="Cluster: "+this.highlighted_element.center().toFixed(3)+" ppm"}else if(this.element_type=="compound"){t=this.highlighted_element.name}else if(this.element_type=="spectrum"){t=this.highlighted_element.name}return t};e.prototype.parsed_text=function(){const t=this.highlighted_element;const e=function(e,n,i){let r;if(n=="p"){r=t[i]}else if(n=="f"){r=t[i]()}else if(n=="m"){r=t.meta[i]}return r};return this.text_display.replace(/#\{(.):(.*?)\}/g,e)};t.SVHighlighter=e})(JSpectraViewer);(function(t){function e(t,e){const n=this;this.sv=t;this.id=e;this.speed=400;this.active_ids=[];this.container=d3v7.select(e);this.static_compounds;this.table=this.container.append("table").style("display","none").attr("class","jsv-cluster-navigator");this.thead=this.table.append("thead");this.tbody=this.table.append("tbody");t.on("selection-add.cluster-navigator",function(){n.table.style("display","block");n.update_table()});if(t.selection.present())t.trigger("selection-add.cluster-navigator");t.on("selection-remove.cluster-navigator",function(){n.update_table()});t.on("adjust-end.cluster-navigator",function(){n.update_table()});t.on("selection-empty.cluster-navigator",function(){if(!n.static_compounds){n.table.style("display","none")}});d3v7.select(".jsv-cluster-navigator").on("click",function(t){const e=d3v7.select(t.target);window.getSelection().removeAllRanges();if(e.classed("cluster-unit")){n.move_to_cluster(e.node())}
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Note that you must allow pop-ups!</div>'+'<div><label class="jsv-label">Width</label><div class="jsv-input-group">'+'<input class="jsv-input" id="jsv-save-width" type="text" value="'+t.width+'" /><div class="jsv-input-addon">px</div></div></div>'+'<div><label class="jsv-label">Height</label><div class="jsv-input-group">'+'<input class="jsv-input" id="jsv-save-height" type="text" value="'+t.height+'" /><div class="jsv-input-addon">px</div></div></div>'};const i=d3v7.line().x(function(t){return t.x}).y(function(t){return t.y}).curve(d3v7.curveLinear);const r=function(t,e,n,i,r,s){const o=t.append("g").attr("class","jsv-menu-button");o.append("rect").attr("x",0).attr("y",0).attr("width",i).attr("height",r).attr("rx",2).attr("ry",2).style("stroke-width",1);const a=s.remove();o.append("g").attr("class","jsv-button-image").append(function(){return a.node()});o.attr("transform","translate("+e+".5,"+n+".5)");return o};const s=function(t){const e=t.append("g");const n=3;e.append("line").attr("x1",10).attr("y1",0).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",6).attr("y1",7).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",14).attr("y1",7).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",2).attr("y1",16).attr("x2",18).attr("y2",16).attr("stroke-linecap","round").attr("stroke-width",n);return e};const o=function(t){const e=t.append("g");const n=4;e.append("circle").attr("cx",10).attr("cy",10).attr("r",7).style("fill","rgb(75, 75, 75");e.append("line").attr("x1",10).attr("y1",1).attr("x2",10).attr("y2",19).attr("stroke-width",n);e.append("line").attr("x1",1).attr("y1",10).attr("x2",19).attr("y2",10).attr("stroke-width",n);e.append("line").attr("x1",3.5).attr("y1",3.5).attr("x2",16.5).attr("y2",16.5).attr("stroke-width",n);e.append("line").attr("x1",16.5).attr("y1",3.5).attr("x2",3.5).attr("y2",16.5).attr("stroke-width",n);e.append("circle").attr("cx",10).attr("cy",10).attr("r",3).style("fill","white");return e};const a=function(t,e,n,i,r,s){const o=t.append("g");const a=1;const l=2;const c=n+l;const u=n+r-l;const h=2;const f=e+i/2;o.append("line").attr("x1",e).attr("y1",n).attr("x2",e+i).attr("y2",n).attr("stroke-width",a);o.append("line").attr("x1",e).attr("y1",n+r).attr("x2",e+i).attr("y2",n+r).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f).attr("y2",u).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f-h).attr("y2",c+h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f+h).attr("y2",c+h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",u).attr("x2",f-h).attr("y2",u-h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",u).attr("x2",f+h).attr("y2",u-h).attr("stroke-width",a);o.attr("stroke","rgb(150, 150, 150)").attr("transform","rotate("+s+","+e+","+n+")");return o};const l=function(t){return t.append("line").attr("x1",3).attr("y1",8).attr("x2",13).attr("y2",8).attr("stroke-width",3).attr("stroke","black")};const c=function(t){const e=t.append("g");e.append("line").attr("x1",3).attr("y1",8).attr("x2",13).attr("y2",8).attr("stroke-width",3).attr("stroke","black");e.append("line").attr("x1",8).attr("y1",3).attr("x2",8).attr("y2",13).attr("stroke-width",3).attr("stroke","black");return e};const u=function(t,e){return t.append("path").attr("d",i(e)).attr("stroke","black").attr("stroke-width",3).attr("fill","none")};const h=function(t,e,n,i){return setInterval(function(){t.translate_axis(e,n);t.fast_draw()},i)};function f(t){const e=this;this.sv=t;this.slide_time=500;this._visible=true;this.menu=t.sv_wrapper.append("div").style("visibility","visible").attr("class","jsv-menu").on("click",function(){window.getSelection().removeAllRanges()});this.menu_svg=this.menu.append("svg").attr("width",this.width()).attr("height",this.height());
446this.handle=t.sv_wrapper.append("div").attr("class","jsv-menu-handle").on("click",function(){if(e.opened()){e.close()}else{e.open()}}).on("mouseover",function(){e.handle_mouseover()}).on("mouseout",function(){e.handle_mouseout()});const n=40;const i=12;this.handle_svg=this.handle.append("svg").attr("width",n).attr("height",i);this.stroke_width=4;this.handle_data_closed=[{x:0,y:0},{x:n/2,y:i-this.stroke_width},{x:n,y:0}];this.handle_data_opened=[{x:0,y:i},{x:n/2,y:this.stroke_width},{x:n,y:i}];this.draw();t.trigger("domain-change.menu")}f.prototype.visible=function(t){if(arguments.length==0)return this._visible;if(t){this._visible=true;this.handle.style("visibility","visible");this.menu.style("visibility","visible")}else{this._visible=false;this.handle.style("visibility","hidden");this.menu.style("visibility","hidden")}};f.prototype.opened=function(){return this.menu.style("visibility")=="visible"};f.prototype.width=function(){return 300};f.prototype.height=function(){return 41};f.prototype.open=function(e){e=t.default_for(e,this.slide_time);this.menu.style("visibility","visible");this.menu.transition().duration(e).style("top","0px").style("opacity",1);this.handle_path.transition().duration(e).attr("d",i(this.handle_data_opened))};f.prototype.close=function(e){e=t.default_for(e,this.slide_time);this.menu.transition().duration(e).style("top","-50px").style("opacity",0).on("end",function(){d3v7.select(this).style("visibility","hidden")});this.handle_path.transition().duration(e).attr("d",i(this.handle_data_closed))};f.prototype.handle_mouseover=function(){this.handle_path.transition().duration(200).attr("stroke","black")};f.prototype.handle_mouseout=function(){this.handle_path.transition().duration(200).attr("stroke","grey")};f.prototype.draw=function(){const f=this.sv;const p=this;let m;let g=5;let _=4;this.handle_path=this.handle_svg.append("path").attr("d",i(this.handle_data_closed)).attr("stroke","grey").attr("stroke-width",this.stroke_width).attr("fill","none");if(this.sv.constructor.name==="SpectraViewer"){const t=[{x:11,y:4},{x:4,y:15},{x:11,y:26}];const e=[{x:4,y:4},{x:11,y:15},{x:4,y:26}];const n=u(this.menu_svg,t);const i=u(this.menu_svg,e);this.nav_group=this.menu_svg.append("g");this.scroll_left_button=r(this.nav_group,0,0,15,30,n);this.scroll_right_button=r(this.nav_group,17,0,15,30,i);this.nav_group.attr("transform","translate("+7+","+4+")");this.scroll_left_button.on("mousedown",function(){if(d3v7.select(this).classed("disabled"))return;m=h(f,"x",g,_);return false});this.scroll_right_button.on("mousedown",function(){if(d3v7.select(this).classed("disabled"))return;m=h(f,"x",-g,_);return false});$(document).mouseup(function(){if(m){clearInterval(m);f.full_draw()}})}else{this.reset_zoom_button=r(this.menu_svg,10,4,30,30,d(this.menu_svg));this.reset_zoom_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=[[-10,500],[-10,500]];f.move_to(t,1e3)})}this.zoom_group=this.menu_svg.append("g");this.zoom_y_minus_button=r(this.zoom_group,6,18,16,16,l(this.menu_svg));this.zoom_y_plus_button=r(this.zoom_group,6,0,16,16,c(this.menu_svg));this.zoom_x_minus_button=r(this.zoom_group,25,9,16,16,l(this.menu_svg));this.zoom_x_plus_button=r(this.zoom_group,43,9,16,16,c(this.menu_svg));a(this.zoom_group,0,.5,5,34,0);a(this.zoom_group,25.5,32,5,34,-90);this.zoom_group.attr("transform","translate("+55+","+2+")");this.zoom_x_minus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.x.diff()/2;const e=[[f.scale.x.min()-t,f.scale.x.max()+t],f.scale.y.domain()];f.move_to(e)});this.zoom_x_plus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.x.diff()/4;const e=[[f.scale.x.min()+t,f.scale.x.max()-t],f.scale.y.domain()];f.move_to(e)});this.zoom_y_minus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.y.diff()/2;const e=[f.scale.x.domain(),[f.scale.y.min()-t,f.scale.y.max()+t]];f.move_to(e)});this.zoom_y_plus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.y.diff()/4;const e=[f.scale.x.domain(),[f.scale.y.min()+t,f.scale.y.max()-t]];f.move_to(e)});f.on("domain-change.menu",function(){if(f.zoom_x==1){p.zoom_x_minus_button.classed("disabled",true)}else if(f.zoom_x>=f.zoom_max){p.zoom_x_plus_button.classed("disabled",true)}
446else{p.zoom_x_minus_button.classed("disabled",false);p.zoom_x_plus_button.classed("disabled",false)}if(f.zoom_y==1){p.zoom_y_minus_button.classed("disabled",true)}else if(f.zoom_y>=f.zoom_max){p.zoom_y_plus_button.classed("disabled",true)}else{p.zoom_y_minus_button.classed("disabled",false);p.zoom_y_plus_button.classed("disabled",false)}if(f.constructor.name==="SpectraViewer"){if(f.scale.x.min()==f.boundary.x.min()){p.scroll_right_button.classed("disabled",true)}else{p.scroll_right_button.classed("disabled",false)} 447if(f.scale.x.max()==f.boundary.x.max()){p.scroll_left_button.classed("disabled",true)}else{p.scroll_left_button.classed("disabled",false)}}else if(f.zoom_y===1&&f.zoom_x===1){p.reset_zoom_button.classed("disabled",true)}else{p.reset_zoom_button.classed("disabled",false)}});const v=this.menu_svg.append("text").attr("x",15).attr("y",24).attr("font-family","sans-serif").attr("font-size","26px").attr("stroke-width",1).attr("fill","black").attr("class","jsv-button-text").style("text-anchor","middle").text("?");this.help_button=r(this.menu_svg,260,4,30,30,v);this.help_button.on("click",function(){f.help.dialog.open()});const y=s(this.menu_svg).attr("transform","translate(5,7)");this.download_button=r(this.menu_svg,220,4,30,30,y);this.download_dialog=new t.SVDialog(f,{header_text:"Save Image",content_text:n(f),buttons:{Cancel:function(){this.close()},Generate:function(){e(f,this)}},width:400,height:250});this.download_button.on("click",function(){p.download_dialog.open()});const b=o(this.menu_svg).attr("transform","translate(5,5)");this.settings_button=r(this.menu_svg,180,4,30,30,b);this.settings_button.on("click",function(){f.settings.open()});const x=this.menu_svg.append("text").attr("x",149).attr("y",32).attr("font-family","sans-serif").attr("font-size","16px").attr("stroke-width",1).attr("fill","grey").attr("class","jsv-button-text").style("text-anchor","middle").text("JSV")};let d=function(t){let e=t.append("g");e.append("circle").attr("cx",13).attr("cy",12).attr("r",9).style("fill","grey");e.append("circle").attr("cx",13).attr("cy",12).attr("r",7).style("fill","white");e.append("line").attr("x1",17).attr("y1",17).attr("x2",25).attr("y2",25).attr("stroke-width",3).attr("stroke","black");e.append("line").attr("x1",9).attr("y1",12).attr("x2",17).attr("y2",12).attr("stroke-width",3).attr("stroke","black");return e};t.SVMenu=f})(JSpectraViewer);(function(t){function e(e){this.sv=e;const r=e.toString()==="SpectraViewer"?n:i;this.dialog=new t.SVDialog(e,{header_text:"JSpectraViewer (JSV) Help",content_text:r,width:700,height:350})}let n=""+"The view of the spectra can be scrolled around or scaled using the controls in the menu or by using the various mouse and keyboard shortcuts:"+"<h3>Viewer Controls</h3>"+'<table class="jsv-table">'+"<thead><tr><th>Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Zoom In/Out X Axis</td><td>Scroll wheel</td></tr>"+"<tr><td>Zoom In/Out Y Axis</td><td>Option/Alt Key + Scroll wheel</td></tr>"+"<tr><td>Zoom In on Area</td><td>Option/Alt Key + Click and Drag around area</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Option/Alt Key + Click once anywhere on viewer </td></tr>"+"<tr><td>Move Around</td><td>Click and Drag</td></tr></tbody></table>"+"<h3>Zoombox Controls (box in upper left corner)</h3>"+'<table class="jsv-table">'+"<thead><tr><th>Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Move Around</td><td>Click and Drag grey selection box</td></tr>"+"<tr><td>Zoom In on Area</td><td>Click on unselected region and drag around new selection</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Click once anywhere in unselected region</td></tr>"+"<tr><td>Alter Zoomed Area</td><td>Click and Drag on sides of grey selection box</td></tr></tbody></table>"+"<h3>Troubleshooting</h3>"+"<p>If the viewer is not showing any spectra or is slow, try updating to the latest version of your "+'browser. We have found that <a href="https://www.google.com/chrome" target="_blank">Google Chrome</a> is the fastest.</p></div></div>';let i=""+"The view of the spectra can be scaled using the controls in the menu or by using the various mouse and keyboard shortcuts:"+"<h3>Viewer Controls</h3>"+'<table class="jsv-table">'+"<thead><tr><th>
447Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Adjust Peak Sensitivity</td><td>Scroll wheel</td></tr>"+"<tr><td>Zoom In on Area</td><td>Click and Drag around area</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Double click inside viewer</td></tr>"+"<h3>Troubleshooting</h3>"+"<p>If the viewer is not showing any spectra or is slow, try updating to the latest version of your "+'browser. We have found that <a href="https://www.google.com/chrome" target="_blank">Google Chrome</a> is the fastest.</p></div></div>';t.SVHelp=e})(JSpectraViewer);(function(t){function e(e,n){n=n||{};const i=this;this.wrapper=e.sv_wrapper.node();this.fade_time=t.default_for(n.fade_time,500);this.header_text=t.default_for(n.header_text,"");this.content_text=t.default_for(n.content_text,"");this.height=t.default_for(n.height,300);this.width=t.default_for(n.width,300);this.buttons=n.buttons;this.box=d3v7.select(this.wrapper).append("div").style("display","none").attr("class","jsv-dialog");this.header=this.box.append("div").attr("class","jsv-dialog-header").html(this.header_text);this.dismiss=this.box.append("div").attr("class","jsv-dialog-dismiss").html("X").on("click",function(){i.close()});this.contents=this.box.append("div").attr("class","jsv-dialog-contents jsv-scroll");if(this.buttons){this.footer=this.box.append("div").attr("class","jsv-dialog-footer");this.generate_buttons()}this.contents.html(this.content_text);this.adjust_size();return i}e.prototype.visible=function(){return this.box.style("display")!="none"};e.prototype.open=function(){this.adjust_size();this.box.style("display","block");this.box.transition().duration(this.fade_time).style("opacity",1);return this};e.prototype.close=function(){this.box.transition().duration(this.fade_time).style("opacity",0).on("end",function(){d3v7.select(this).style("display","none")});return this};e.prototype.generate_buttons=function(){const t=this;const e=Object.keys(this.buttons);e.forEach(function(e){t.footer.append("button").html(e).attr("class","jsv-button").on("click",function(){t.buttons[e].call(t)})})};e.prototype.adjust_size=function(){const t=50;const e=this.wrapper.offsetWidth;const n=this.wrapper.offsetHeight;let i=this.width;let r=this.height;if(this.height>n-t)r=n-t;if(this.width>e-t)i=e-t;const s=40;const o=this.buttons?35:0;const a=r-s-o;this.box.style("width",i+"px").style("height",r+"px");this.contents.style("height",a+"px")};t.SVDialog=e})(JSpectraViewer);(function(t){function e(e,n){n=n||{};const i=this;this.sv=e;this.object=t.default_for(n.object,e);this.title=t.default_for(n.title,"Settings");this.height=t.default_for(n.height,400);this.width=t.default_for(n.width,400);n.settings=n.settings||[];this.settings=[];n.settings.forEach(function(t){i.settings.push(new r(i.object,t))});this.dialog=new t.SVDialog(e,{header_text:this.title,content_text:this.settings_html(),buttons:{Done:function(){this.close()}},width:this.width,height:this.height});return this}e.prototype.open=function(){const t=this;this.dialog.contents.html(this.settings_html());d3v7.selectAll(".jsv-setting").on("change",function(){const e=d3v7.select(this);const n=t.find(e.attr("id"));const i=e.property("checked");n.value(i);t.sv.full_draw()});this.dialog.open();return this};e.prototype.close=function(){this.dialog.close();return this};e.prototype.find=function(t){return this.settings.filter(function(e){return e.id()==t})[0]};e.prototype.settings_html=function(){html='<div class="jsv-settings">';this.settings.forEach(function(t){html+='<div><label class="jsv-label">'+t.label+"</label>";html+='<div class="jsv-input-group">';if(t.type=="boolean"){html+=n(t)}html+="</div></div>"});html+="</div>";return html};const n=function(t){html="";html+='<input type="checkbox" class="jsv-input jsv-setting" id="'+t.id()+'"';if(t.value()){html+=' checked="true" '}html+=" />";return html};let i=0;function r(e,n){n=n||{};this.object=e;this.label=n.label;this.property=n.property;this.type=t.default_for(n.type,"boolean");this.id()}r.prototype.id=function(){const t=s();this.id=function(){return t};return t};const s=function(){return"jsv-setting-id-"+i++};r.prototype.value=function(t){if(arguments.length==0){if(typeof this.property==="function"){t=this.property.call(this.object)}else{t=this.object[this.property]}}else{if(typeof this.property==="function"){this.property.call(this.object,t)}else{this.object[this.property]=t}self.sv.full_draw()}return t};t.SVSettings=e})(JSpectraViewer);(function(t){function e(e){t.pixel(10);this.sv=e;let n=e.zoombox_size||10;this.width=e.width*n/100;this.height=e.height*n/100;this.adjusting=false;this.svg=e.sv_wrapper.append("svg").attr("width",this.width+1).attr("height",this.height+1).style("position","absolute").style("top",0).style("left",e.width-this.width-1);if(e.axis_x_reverse){this.svg.style("left",0)}this.border=this.svg.append("rect").attr("x",0).attr("y",0).attr("width",this.width).attr("height",this.height).attr("fill","white").attr("stroke","#BBB");this.scale=new t.SVScale;this.scale.y.range([this.height,0]);let i=this.sv.axis_x_reverse?[this.width,0]:[0,this.width];this.scale.x.range(i);this.initialize_brushing();this.spectra_function=d3v7.line().x(t=>this.scale.x(t.x)).y(t=>this.scale.y(t.y))}Object.defineProperty(e.prototype,"visible",{get:function(){return this._visible},set:function(t){this._visible=t;if(this._visible){this.svg.style("display","block")}else{this.svg.style("display","none")}this.sv.legend.update();this.sv.draw()}});e.prototype.initialize_brushing=function(){const e=this;const n=e.sv;e.brush=d3v7.brush().extent([[e.scale.x.range()[1],e.scale.y.range()[1]],[e.scale.x.range()[0],e.scale.y.range()[0]]]).on("start",i).on("brush",r).on("end",s);e.select_brush=e.svg.append("g").attr("class","active-brush").call(e.brush);function i(t){if(t.sourceEvent)t.sourceEvent.preventDefault()}function r(i){if(!(i.selection===null)&&!e.adjusting){let t;if(n.axis_y_lock!==false){const n=i.selection;const r=n[0][0];const s=n[1][0];const o=e.scale.y.domain()[0];const a=e.scale.y.invert(d3v7.pointer(i,e.svg.node())[1]);const l=e.scale.y.domain()[1];let c=Math.min(a,l);c=Math.max(o,c);t=[[e.scale.x.invert(s),0],[e.scale.x.invert(r),c]]}if(!t)t=[[e.scale.x.invert(i.selection[1][0]),e.scale.y.invert(i.selection[1][1])],[e.scale.x.invert(i.selection[0][0]),e.scale.y.invert(i.selection[0][1])]];n.set_domain_to_brush_extent(t,false);n.fast_draw()}if(n.debug){n.debug_data.zbox["X1"]=t.round(e.brush.extent()[0][0]);n.debug_data.zbox["Y1"]=t.round(e.brush.extent()[0][1]);n.debug_data.zbox["X2"]=t.round(e.brush.extent()[1][0]);n.debug_data.zbox["Y2"]=t.round(e.brush.extent()[1][1])}}function s(t){if(!e.adjusting){n.zoom_axis="";n.draw()}}};e.prototype.add_spectrum=function(t){const e=this.sv.boundary;this.scale.x.domain(e.x.domain());this.scale.y.domain(e.y.domain());this.svg.append("path").attr("id",t.id).attr("d",this.spectra_function(t.simple_xy_data.asArray())).attr("stroke",t.color).attr("stroke-width",.5).attr("fill","none");this.set_zoom_area(e)};e.prototype.remove_spectra=function(t){this.sv.container.select("path#"+t).remove()};e.prototype.update=function(){const t=this;const e=this.sv;if(e.axis_x_reverse){this.svg.style("left",0)}else{this.svg.style("left",e.width-this.width-1)}
447this.sv.all_spectra().forEach(function(e){t.remove_spectra(e.id);if(e.active){t.add_spectrum(e)}})};e.prototype.set_zoom_area=function(t){let e=this;const n=e.scale.x(t.x.domain()[1]);const i=e.scale.x(t.x.domain()[0]);const r=e.scale.y(t.y.domain()[1]);const s=e.scale.y(t.y.domain()[0]);e.adjusting=true;e.select_brush.call(e.brush.move,[[n,r],[i,s]]);e.adjusting=false};t.ZoomBox=e})(JSpectraViewer);(function(t){t.default_for=function(t,e){return t===undefined?e:t};t.pixel_ratio=1;t.pixel=function(e){return e*t.pixel_ratio};t.get_pixel_ratio=function(t){const e=t.getContext("2d");const n=window.devicePixelRatio||1;const i=e.webkitBackingStorePixelRatio||e.mozBackingStorePixelRatio||e.msBackingStorePixelRatio||e.oBackingStorePixelRatio||e.backingStorePixelRatio||1;return n/i};t.scale_resolution=function(t,e){const n=t.getContext("2d");if(e!=1){const n=t.width;const i=t.height;t.width=n*e;t.height=i*e;t.style.width=n+"px";t.style.height=i+"px"}};Function.prototype.inherits=function(t){this.prototype=Object.create(t.prototype)};t.merge=function(){const t={};let e,n,i;let r=0;const s=arguments.length;for(;r<s;r++){e=arguments[r];if(typeof e==="object"){n=Object.keys(e);let r=0;const s=n.length;for(;r<s;r++){i=n[r];t[i]=e[i]}}}return t};t.unique_id=function(t,e,n){let i;do{i=t+e;e++}while(n.indexOf(i)>-1);return i};t.round=function(t,e=2){return d3v7.round(t,e)};t.elapsed_time=function(t){const e=(new Date).getTime()-t;return e+" ms"};t.index_of_value=function(t,e,n){let i=0;let r=t.length-1;let s,o;if(t[i]>=e)return i;if(t[r]<=e)return r;while(r-i>1){s=(i+r)/2|0;o=t[s];if(o<e){i=s}else if(o>e){r=s}else{return s}}return n?r:i};t.lorentzian=function(t,e,n,i){const r=n*n;const s=t-e;return i*r/(r+4*s*s)};t.sum_of_peaks=function(e,n){let i=0;let r;for(let s=0;s<n.length;s++){r=n[s];i+=t.lorentzian(e,r.center,r.width,r.amplitude)}return i};t.xy_from_peaks=function(e,n,i,r,s){if(s)e=t.peaks_in_range(e,i,r,6);const o=t.peaks_in_range(e,i,r);const a=o.order_by("center").map(function(t){return t.center});let l=i;const c=r;const u=[],h=[];const f=(r-i)/n;while(l<c){u.push(l);h.push(t.sum_of_peaks(l,e));if(a[0]&&a[0]<=l+f){l=a.shift()}else{l+=f}}u.push(r);h.push(t.sum_of_peaks(r,e));return{x:u,y:h}};t.peaks_in_range=function(e,n,i,r){r=r||0;const s=new t.SVSet;e.forEach(function(e){if(t.peak_min([e],r)<i&&t.peak_max([e],r)>n){s.push(e)}});return s};t.peak_min=function(t,e){e=e||3;let n,i;if(t.length>0){i=t[0]}t.forEach(function(t){if(t.center<i.center){i=t}});if(i){n=i.center-e*i.width}return n};t.peak_max=function(t,e){e=e||3;let n,i;if(t.length>0){i=t[0]}t.forEach(function(t){if(t.center>i.center){i=t}});if(i){n=i.center+e*i.width}return n};t.number=function(t){if(t===undefined)return;return Number(t)};t.isNumeric=function(t){return isFinite(t)&&parseFloat(t)==t};t.decimalPlaces=function(t){const e=(""+t).match(/(?:\.(\d+))?(?:[eE]([+-]?\d+))?$/);if(!e){return 0}return Math.max(0,(e[1]?e[1].length:0)-(e[2]?+e[2]:0))};t.colors=function(t,e,n,i,r,s,o,a,l,c){const u=[];if(t==undefined)t=50;if(e==undefined)e=200;if(n==undefined)n=30;if(i==undefined)i=1;if(r==undefined)r=2.4;if(s==undefined)s=2.4;if(o==undefined)o=2.4;if(a==undefined)a=0;if(l==undefined)l=2;if(c==undefined)c=4;for(let h=0;h<t;++h){const t=Math.round(Math.sin(r*h+a)*n+e);const f=Math.round(Math.sin(s*h+l)*n+e);const d=Math.round(Math.sin(o*h+c)*n+e);u.push("rgba("+t+","+f+","+d+","+i+")")}return u};t.test_colors=function(t){t.forEach(function(t){document.write('
447<font style="color:'+t+'">█</font>')});document.write("<br/>")};t.convert_base64_to_float64=function(t,e){if(typeof e==="undefined"){e=false}const n=atob(t);let i=new Int8Array(n.length);if(e){i=new Zlib.Deflate(i)}for(let t=0;t<n.length;t++){i[t]=n.charCodeAt(t)}const r=new Float64Array(i.buffer);return r};t.convert_bayesil_data=function(e){const n={id:t.default_for(e.id,"Fit"),name:t.default_for(e.name,"Fit"),compounds:[],display:t.merge({color:"blue"},e.display),meta:{dss_concentration:e.dss_conc}};e.metabolites.forEach(function(e){const i={concentration:e.concentration,original_concentration:e.concentration,concentration_units:"\u03bcM",id:e.id,name:e.name,clusters:[],display:{visible:false},meta:{dss_ratio:t.default_for(t.number(e.dss_ratio),1),threshold:e.threshold,score:e.score}};i.meta.amplitude_coefficient=i.concentration/i.meta.dss_ratio/n.meta.dss_concentration;e.clusters.forEach(function(e){const n={peaks:[],meta:{shift:e.shift}};e.shift=t.default_for(e.shift,0);n.upper_bound=e.upper_bound;n.lower_bound=e.lower_bound;n.meta.lower_bound_diff=e.lower_bound_diff;n.meta.upper_bound_diff=e.upper_bound_diff;e.peaks.forEach(function(t){const r={center:Number(t.center)+Number(e.shift),width:Number(t.width),original_amplitude:Number(t.amplitude),amplitude:Number(t.amplitude)*Number(i.meta.amplitude_coefficient),meta:{initial_width:t.initial_width}};n.peaks.push(r)});i.clusters.push(n)});n.compounds.push(i)});return n};t.create_bayesil_json=function(t,e){t=t||{xy_data:{x:[],y:[]}};const n={dss_conc:e.meta.dss_concentration,metabolites:[],meta:t.meta};e.compounds().forEach(function(t){const i={name:t.name,id:t.id,concentration:t.concentration,dss_ratio:t.meta.dss_ratio,score:t.meta.score,threshold:t.meta.threshold,clusters:[]};t.meta.amplitude_coefficient=t.concentration/t.meta.dss_ratio/e.meta.dss_concentration;t.clusters().forEach(function(e){const n={center:e.center(),initial_center:e.meta.initial_center,shift:e.center(),lower_bound:e.lower_bound,upper_bound:e.upper_bound,peaks:[]};e.peaks().forEach(function(i){let r;if(t.original_concentration==0){r=i.original_amplitude}else{r=i.amplitude/t.meta.amplitude_coefficient}const s={amplitude:r,center:i.center-e.center(),width:i.width,initial_width:i.meta.initial_width};if(isNaN(s.amplitude))s.amplitude=0;n.peaks.push(s)});i.clusters.push(n)});n.metabolites.push(i)});n.spectrum_xy={x:t.xy_data.x,y:t.xy_data.y};return n};if(!Number.isInteger){Number.isInteger=function t(e){return typeof e==="number"&&isFinite(e)&&e>-9007199254740992&&e<9007199254740992&&Math.floor(e)===e}}})(JSpectraViewer);(function(t){let e=[];function n(t,n){const i=e.x[t]-e.x[n],r=e.y[t]-e.y[n];return i*i+r*r}function i(t,n,i){let r=e.x[n],s=e.y[n],o=e.x[i]-r,a=e.y[i]-s;if(o!==0||a!==0){const n=((e.x[t]-r)*o+(e.y[t]-s)*a)/(o*o+a*a);if(n>1){r=e.x[i];s=e.y[i]}else if(n>0){r+=o*n;s+=a*n}}o=e.x[t]-r;a=e.y[t]-s;return o*o+a*a}function r(t,e){let i=t[0];const r=[i];let s;let o=1;const a=t.length;for(;o<a;o++){s=t[o];if(n(s,i)>e){r.push(s);i=s}}if(i!==s)r.push(s);return r}function s(t,e){const n=t.length,r=typeof Uint8Array!=="undefined"?Uint8Array:Array,s=new r(n);let o=0,a=n-1;const l=[],c=[];let u,h,f,d;s[o]=s[a]=1;while(a){h=0;for(u=o+1;u<a;u++){f=i(t[u],t[o],t[a]);if(f>h){d=u;h=f}}if(h>e){s[d]=1;l.push(o,d,d,a)}a=l.pop();o=l.pop()}for(u=0;u<n;u++){if(s[u])c.push(t[u])}return c} 448/** 449 * Simplify.js is a high-performance JS polyline simplification library by Vladimir Agafonkin. 450 * [Orignal Project](http://mourner.github.io/simplify-js) 451 * 452 * It has been adapted here to work with a different point format. 453 * The format used in JSV is an object of arrays: 454 * ```js 455 * points = { x: [1, 2, 3], y: [10, 20, 30] }; 456 * ``` 457 * There can also be an optional yi array, to hold the imaginary component of 458 * the line. This is used when incorporating phasing into the viewer. 459 * 460 * The orginal format was an array of points: 461 * ```js 462 * // Do not use this format 463 * points = [ {x:1, y:10}, {x:2, y:20}, {x:3, y:30} ]; 464 * ``` 465 * *** 466 * Copyright (c) 2012, Vladimir Agafonkin 467 * All rights reserved. 468 * 469 * Redistribution and use in source and binary forms, with or without modification, are 470 * permitted provided that the following conditions are met: 471 * 472 * 1. Redistributions of source code must retain the above copyright notice, this list of 473 * conditions and the following disclaimer. 474 * 475 * 2. Redistributions in binary form must reproduce the above copyright notice, this list 476 * of conditions and the following disclaimer in the documentation and/or other materials 477 * provided with the distribution. 478 * 479 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY 480 * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF 481 * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE 482 * COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
483 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 484 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 485 * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR 486 * TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 487 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.) 488 * 489 * @param {Object} points An object containing an x and y array of points. There may also be an yi array. 490 * @param {Number} tolerance Affects the amount of simplification. [Default: 1] 491 * @param {Boolean} highestQuality Excludes distance-based preprocessing step which leads to highest quality simplification but runs ~10-20 times slower. [Default: false] 492 */function o(t,n,i){const o=t.x.length;if(o<=1)return t;e=t;let a=new Array(o);for(let t=0;t<o;t++){a[t]=t}const l=n!==undefined?n*n:1;a=i?a:r(a,l);a=s(a,l);const c=new Array(a.length);const u=new Array(a.length);for(let t=0,n=a.length;t<n;t++){c[t]=e.x[a[t]];u[t]=e.y[a[t]]}let h;if(e.yi){h=new Array(a.length);for(let t=0,n=a.length;t<n;t++){h[t]=e.yi[a[t]]}}t={x:c,y:u};if(h){t.yi=h}return t}t.simplify=o})(JSpectraViewer);(function(t){function e(e){this.container_id=e.container_id;this.width=e.width||200,this.height=e.height||200,this.container=d3v7.select(this.container_id);this.container.classed("js-structure",true);this.data=e.data;this.format=e.format||"mol";this.x_scale;this.y_scale;this.avgL=0;this.show_hydrogen=t.default_for(e.show_hydrogen,false);this.show_atom_numbers=t.default_for(e.show_atom_numbers,false);this.use_jsmol=t.default_for(e.use_jsmol,false);this.nmr_nucleus=e.nmr_nucleus;this.interactive_1H=true;this._atoms=new t.SVSet;this._bonds=new t.SVSet;if(this.data){this.read_data(this.data,this.format)}this.handlers=new t.SVEvents;this.on=this.handlers.on;this.off=this.handlers.off;this.trigger=this.handlers.trigger}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.initSVG=function(){const t=this;const e=t.container;const n=d3v7.extent(t.atoms(),function(t){return t.x});const i=d3v7.extent(t.atoms(),function(t){return t.y});const r=[15,15,20,15];t.margins=r;let s=t.width-r[1]-r[3];let o=t.height-r[0]-r[2];const a=s/o;t.structure_ratio=(n[1]-n[0])/(i[1]-i[0]);const l=a>=t.structure_ratio?"height":"width";if(l=="height"){s=o*t.structure_ratio}else{o=s/t.structure_ratio}t.wp=s;t.hp=o;t.x_scale=d3v7.scaleLinear().domain([n[0],n[1]]).range([r[1],s-r[3]]);t.y_scale=d3v7.scaleLinear().domain([i[0],i[1]]).range([o-r[2],r[0]]);e.style({height:t.height+"px",width:t.width+"px"});t.add_menu_bar();if(!this.use_jsmol)t.add_resizer();e.select("div.js-graph-div").remove();let c=null;if(!this.use_jsmol){t.graph_div=e.append("div").attr("class","js-graph-div").style({width:s+"px",height:o+"px",margin:"0 auto","margin-top":(t.height-o-r[0])/2+"px"});c=t.graph_div.append("svg:svg").attr("width","100%").attr("height","100%").append("svg:g")}return c};e.prototype.add_menu_bar=function(){const t=this;t.container.select("div.menubar").remove();const e=t.container.insert("div",":first-child").attr("class","menubar");t.button_toggle_H=e.append("div").attr("class","toggle-hydrogens menu-button button-on").style("width","60px").text("Show H").on("click",function(){t.toggleH();d3v7.event.stopPropagation()});t.button_toggle_numbers=e.append("div").attr("class","toggle-atom-ids menu-button button-on").text("Show #").style("width","60px").on("click",function(){t.toggleAtomNumbers();d3v7.event.stopPropagation()});let n="Click and drag to rotate the structure";t.feedback_div=e.append("p").attr("class","feedback").text(n);t.menu_buttons_width=t.button_toggle_numbers.offsetWidth+t.button_toggle_numbers.offsetWidth};e.prototype.add_resizer=function(){const t=this;const e=t.margins;const n=t.wp;const i=t.hp;const r=d3v7.select("body");t.resizer=t.container.append("div").attr("class","js-structure-resizer").on("mousedown.resizer",function(){let s=d3v7.event.x;let o=d3v7.event.y;d3v7.event.preventDefault();r.on("mousemove.resizer",function(){dx_mouse=d3v7.event.x-s;dy_mouse=d3v7.event.y-o;s=d3v7.event.x;o=d3v7.event.y;t.height=t.height+dy_mouse;t.width=t.width+dx_mouse;t.container.style({height:t.height+"px",width:t.width+"px"});const r=t.width/t.height;const a=r>=t.structure_ratio?"height":"width";let l;if(a=="height"){l=(t.height-e[0]-e[2])/i}else{l=(t.width-e[1]-e[3])/n}t.graph.attr("transform","scale("+l+","+l+")");const c=i*l;const u=(t.height-c-e[0])/2;t.graph_div.style({width:n*l+"px",height:i*l+"px","margin-top":u+"px"});t.menu_title.style("width",t.width-t.menu_buttons_width+"px");t.trigger("structure-resize")});r.on("mouseup.resizer",function(){r.on("mousemove.resizer",null);r.on("mouseup.resizer",null)})}).on("click.resizer",function(){d3v7.event.stopPropagation()});const s=[{x:9,y:4},{x:4,y:4},{x:4,y:9},{x:4,y:4},{x:16,y:16},{x:16,y:11},{x:16,y:16},{x:11,y:16}];const o=d3v7.svg.line().x(function(t){return t.x}).y(function(t){return t.y}).interpolate("linear");const a=t.resizer.append("svg").style({width:"100%",height:"100%"}).append("path").attr("d",o(s)).attr("stroke","grey").attr("stroke-width",1).attr("stroke-linejoin","round").attr("stroke-linecap","round").attr("fill","none")};e.prototype.drawBonds=function(){const t=this;const e=this.graph;const i=this.x_scale;const r=this.y_scale;this.create_bond_functions();
492this.bonds().forEach(function(s){let o;let a;let l;let c;const u=s.a1;const h=s.a2;let f;const d=h.x-u.x,p=h.y-u.y,m=Math.sqrt(d*d+p*p),g=d/m*.2,_=p/m*.2;const v=u.x+g,y=u.y+_,b=h.x-g,x=h.y-_;t.avgL+=n(i(v),r(y),i(b),r(x));let w,k,S,M=[];if(s.order===1){if(s.stereo===1){const i=n(v,y,b,x);w=.1;k=w*(x-y)/i;S=w*(v-b)/i;M=[[v,y],[b+k,x+S],[b-k,x-S]];f=e.append("svg:path").style("fill","black").style("stroke-width",1).attr("d",t.wedgeBond(M))}else if(s.stereo===6){w=.2;k=w*(x-y)/m;S=w*(v-b)/m;o=b+k-v;a=x+S-y;l=b-k-v;c=x-S-y;for(let t=.05;t<=1;t+=.15){M.push([v+o*t,y+a*t],[v+l*t,y+c*t])}f=e.append("svg:path").style("fill","none").style("stroke-width",1).attr("d",t.hashBond(M)).attr("stroke","black")}else if(s.stereo===4){w=.2;k=w*(x-y)/m;S=w*(v-b)/m;o=b+k-v;a=x+S-y;l=b-k-v;c=x-S-y;for(let t=.05;t<=1;t+=.1){if(M.length%2===0){M.push([v+o*t,y+a*t])}else{M.push([v+l*t,y+c*t])}}f=e.append("svg:path").attr("d",t.wigglyBond(M)).attr("fill","none").style("stroke-width",1).attr("stroke","black")}else{M=[[v,y],[b,x]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}}else if(s.order===2){w=.1;k=w*(x-y)/m;S=w*(v-b)/m;M=[[v+k,y+S],[b+k,x+S],[v-k,y-S],[b-k,x-S]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").style("fill","none").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}else if(s.order===3){w=.15;k=w*(x-y)/m;S=w*(v-b)/m;M=[[v,y],[b,x],[v+k,y+S],[b+k,x+S],[v-k,y-S],[b-k,x-S]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}if(u.is("H")||h.is("H")){f.classed("bond-H",true)}});t.avgL/=this.bonds().length};e.prototype.drawAtoms=function(){const t=this.graph;const e=this.avgL;const n=this.x_scale;const i=this.y_scale;this.atoms().forEach(function(r){const s=t.append("svg:g").attr("transform","translate("+n(r.x)+","+i(r.y)+")");s.attr("class","atom");if((r.is("C")||r.is("N"))&&r.bonded_Hs().length>0){s.classed("nmr-1h",true)}if(r.is("C")){s.classed("nmr-13c",true)}if(r.is("H")){s.classed("atom-H",true);if(r.isBondedTo("C")||r.isBondedTo("N")){s.classed("nmr-1h",true)}}s.attr("data-atom-number",r.number);s.attr("data-atom-id",r.id);s.append("svg:circle").attr("r",Math.ceil(e/3)).attr("fill","white").attr("opacity","1");s.append("svg:circle").attr("r",Math.ceil(e/2)).attr("fill-opacity","0").attr("class","overlay");s.append("text").attr("dy",Math.ceil(e/4.5)).attr("text-anchor","middle").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/1.5)).attr("fill",r.color()).text(r.symbol);s.append("text").attr("dy",Math.ceil(e/2)+2).attr("text-anchor","middle").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/2.5)).attr("stroke","#FFF").attr("stroke-width","2px").attr("fill","#595").attr("paint-order","stroke").classed("atom-id",true).text(r.display_id);if(r.charge!==0){let t=r.charge;if(t<0){t=t===-1?"-":t+"-"}else{t=t===+1?"+":t+"+"}s.append("text").attr("dx",+1*Math.ceil(e/3)).attr("dy",-1*Math.ceil(e/4.5)).attr("text-anchor","left").attr("font-family","sans-serif").attr("fill",r.color()).attr("font-size",Math.ceil(e/3)).text(t)}if(r.mass!==0){s.append("text").attr("dx",-2*Math.ceil(e/3)).attr("dy",-1*Math.ceil(e/4.5)).attr("text-anchor","left").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/3)).attr("fill",r.color()).text(r.mass)}})};const n=function(t,e,n,i){return Math.sqrt((n-t)*(n-t)+(i-e)*(i-e))};e.prototype.create_bond_functions=function(){const t=this.x_scale;const e=this.y_scale;this.plainBond=d3v7.svg.line().interpolate(function(t){let e=t[0][0]+","+t[0][1];for(let n=1;n<t.length;n++){if(n%2===0){e+="M"+t[n][0]+","+t[n][1]}else{e+="L"+t[n][0]+","+t[n][1]}}return e}).x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.wedgeBond=d3v7.svg.line().x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.hashBond=d3v7.svg.line().interpolate(function(t){let e=t[0][0]+","+t[0][1];for(let n=1;n<t.length;n++){if(n%2===0){e+="M"+t[n][0]+","+t[n][1]}else{e+="L"+t[n][0]+","+t[n][1]}}return e}).x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.wigglyBond=d3v7.svg.line().interpolate("cardinal").x(function(e){return t(e[0])}).y(function(t){return e(t[1])})};AtomColors={H:"#000000",He:"#FFC0CB",Li:"#B22222",B:"#00FF00",C:"#000000",N:"#8F8FFF",O:"#F00000",F:"#DAA520",Na:"#0000FF",Mg:"#228B22",Al:"#808090",Si:"#DAA520",P:"#FFA500",S:"#FFC832",Cl:"#00FF00",Ca:"#808090",Ti:"#808090",Cr:"#808090",Mn:"#808090",Fe:"#FFA500",Ni:"#A52A2A",Cu:"#A52A2A",Zn:"#A52A2A",Br:"#A52A2A",Ag:"#808090",I:"#A020F0",Ba:"#FFA500",Au:"#DAA520"};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
492n.selectAll(".atom").classed("selected",false);t.forEach(function(t){n.select('.atom[data-atom-id="'+t.id+'"]').classed("selected",true)});e.add_partially_selected_highlighting(t)}}});e.prototype.add_partially_selected_highlighting=function(e){const n=this;const i=this.container;i.selectAll(".atom").classed("selected-partially",false);if(n.nmr_1H()){const r=n.hydrogens_from_atoms(e);let s=r.map(function(t){return t.bonded_atoms(1)});s=new t.SVSet(s).unique();s.forEach(function(t){let e=true;const n=t.bonded_Hs();n.forEach(function(t){if(!r.contains(t)){e=false}});if(!e){i.select('.atom[data-atom-id="'+t.id+'"]').classed("selected-partially",true)}})}};e.prototype.read_data=function(t,e){if(e=="mol"){this.read_mol(t)}else if(e=="nmrml"){this.read_nmrml(t)}else{console.log("Format not recognized: "+e+". Must be one of the following: nmrml, mol")}};e.prototype.read_nmrml=function(e){const n=this;if(!window.X2JS){console.log("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const s=new X2JS;const o=s.xml_str2json(e);this.data=e;this._atoms=new t.SVSet;this._bonds=new t.SVSet;if(!(o.structure&&o.structure.atomList&&o.structure.atomList.atom&&Array.isArray(o.structure.atomList.atom))){console.log("nmrML not formatted correctly: no atoms found");return}if(!(o.structure&&o.structure.bondList&&o.structure.bondList.bond&&Array.isArray(o.structure.bondList.bond))){console.log("nmrML not formatted correctly: no bonds found");return}o.structure.atomList.atom.forEach(function(t,e){const r=new i({id:t._id.replace(/\D/g,""),x:parseFloat(t._x),y:parseFloat(t._y),symbol:t._elementType,number:e+1});r.display_id=r.id;n._atoms.push(r)});
492o.structure.bondList.bond.forEach(function(t){const e=t._atomRefs.split(/\s+/);const i=n.atoms(e[0].replace(/\D/g,""));const s=n.atoms(e[1].replace(/\D/g,""));const o=new r({a1:i,a2:s,order:parseInt(t._order)});n._bonds.push(o);i._bonds.push(o);s._bonds.push(o);i._bonded_atoms.push(s);s._bonded_atoms.push(i)});if(this.use_jsmol)this.generate_molfile(o);n.draw()};e.prototype.generate_molfile=function(t){console.log("Generating molfile...");let e=this;let n=function(t){let e=" ";if(typeof t==="undefined"){e+=" 0.0000"}else{t=parseFloat(t).toFixed(4);if(t>=0)e+=" ";if(Math.abs(t)<10)e+=" ";e+=`${t}`}return e};e.mol_file=`\nJSpectraViewer\n\n ${t.structure.atomList.atom.length} ${t.structure.bondList.bond.length} 0 0 0 0 0 0 0 0999 V2000`;t.structure.atomList.atom.forEach(function(t){e.mol_file+=`\n${n(t._x)}${n(t._y)}${n(t._z)}`;e.mol_file+=` ${t._elementType} 0 0 0 0 0 0 0 0 0 0 0 0`});t.structure.bondList.bond.forEach(function(t){let n=t._atomRefs.split(/\s+/);const i=parseInt(n[0].replace(/\D/g,""));const r=parseInt(n[1].replace(/\D/g,""));e.mol_file+=i<10?`\n ${i}`:`\n ${i}`;e.mol_file+=r<10?` ${r}`:` ${r}`;e.mol_file+=` ${t._order} 0 0 0 0`});e.mol_file+="\nM END";return};e.prototype.read_mol=function(e){let n;const s=this;const o=e.split(/\r\n|\n/),a=o[3].match(/\d+/g),l=parseFloat(a[0]),c=parseFloat(a[1]);const u=4;this.title=o[1];this.data=e;this._atoms=new t.SVSet;this._bonds=new t.SVSet;for(let t=u;t<l+u;t++){let e=o[t].match(/-*\d+\.\d+|\w+/g);e=new i({x:parseFloat(e[0]),y:parseFloat(e[1]),symbol:e[3],number:t-u+1,mass:0,charge:0});e.id=e.number;e.display_id=e.number;this._atoms.push(e)}for(let t=l+u;t<l+c+u;t++){let e=o[t].match(/\d+/g);const n=this.atoms(parseInt(e[0]));const i=this.atoms(parseInt(e[1]));e=new r({a1:n,a2:i,order:parseInt(e[2]),stereo:parseInt(e[3])});this._bonds.push(e);n._bonds.push(e);i._bonds.push(e);n._bonded_atoms.push(i);i._bonded_atoms.push(n)}for(let t=l+c+u;t<o.length;t++){if(o[t].indexOf("M ISO")!==-1){n=o[t].match(/-*\d+/g);for(let t=0,e=1;t<n[0];t++,e+=2){this.atoms(n[e]).mass=parseInt(n[e+1],10)}}else if(o[t].indexOf("M CHG")!==-1){n=o[t].match(/-*\d+/g);for(let t=0,e=1;t<n[0];t++,e+=2){atoms[n[e]-1].charge=parseInt(n[e+1],10);this.atoms(n[e]).charge=parseInt(n[e+1],10)}}}s.draw()};e.prototype.loadJsmolScript=function(t,e){let n=document.createElement("script");n.type="text/javascript";if(n.readyState){n.onreadystatechange=function(){if(n.readyState==="loaded"||n.readyState==="complete"){n.onreadystatechange=null;e()}}}else{n.onload=function(){e()}}n.src=t;document.getElementsByTagName("head")[0].appendChild(n)};e.prototype.atom_picked=function(){let e=window.sv;console.log("this",this,window);console.log("sv",e);let n=e.assignment_table;let i=this;console.log("atom_picked",i,this.structure,e);let r=arguments[2]+1;let s=new t.SVSet(i.atoms(r));let o=new t.SVSet;Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${r}; colour halos blue;`);let a=n.cluster_from_atoms(s);if(a){o=a.peaks();s=a.atoms()}e.selection._elements=o.unique();e.draw();n.selected_peaks=o;n.selected_atoms=i.LCA_from_nmr_atoms(s);
492n.table.selectAll("tbody tr").classed("selected",false);if(a){n.table.select("tbody tr[data-cluster-path-id="+a.path_id()+"]").classed("selected",true)}};e.prototype.run_jsmol=function(){let t=this.container;let e=parseFloat(t.style("width"))-10,n=parseFloat(t.style("height"))-30;let i="INLINE";let r=`labels off; select ${this.nmr_nucleus==="13C"?"carbon":"hydrogen"}; label %a;`;let s=this.show_hydrogen?"set showHydrogens TRUE;":"set showHydrogens FALSE;";let o="background white;";let a='set PickCallback "sv.structure.atom_picked";';let l=this.mol_file;let c={width:e,height:n,debug:false,color:"#EAF0F2",use:"HTML5",j2sPath:"/jsmol/j2s",multipleBondSpacing:.9,zoomlarge:true,allowJavaScript:true};c.script="load "+i+' "'+l+'"; color labels black; font labels 20; set antialiasDisplay; wireframe 15; spacefill 55; select carbon; halos on; colour halos grey;'+r+s+o+a;$("#view-3d").html(Jmol.getAppletHtml("jmol_jspectraviewer",c));this.atom_picked()};e.prototype.draw=function(){let t=this;this.graph=this.initSVG();this.avgL=0;if(!this.use_jsmol){this.drawBonds();this.drawAtoms();this.addInteractivity()}else{this.container.append("div").attr("id","view-3d").attr("style","position: relative; z-index: 0;");try{t.run_jsmol()}catch(e){t.loadJsmolScript("/jsmol/JSmol.min.js",function(){t.run_jsmol();t.initialize_jsmol_atom_picking()})}}this.toggleH(this.show_hydrogen);this.toggleAtomNumbers(this.show_atom_numbers)};e.prototype.initialize_jsmol_atom_picking=function(){};e.prototype.atoms=function(t){return this._atoms.get(t)};e.prototype.bonds=function(t){return this._bonds.get(t)};e.prototype.addInteractivity=function(){const t=this;const e=this.container;e.on("mouseenter",function(){e.selectAll(".atom").style("cursor","default");if(t.nmr_1H()){e.selectAll(".atom.nmr-1h").classed("highlight",true).style("cursor","pointer")}else if(t.nmr_13C()){e.selectAll(".atom.nmr-13c").classed("highlight",true).style("cursor","pointer")}});e.on("mouseleave",function(){e.selectAll(".atom").classed("highlight",false)});e.selectAll(".atom").on("click",function(){const e=d3v7.select(this).attr("data-atom-id");let n;if(e){n=t.atoms(e);if(t.nmr_1H()){t.select_clicked_atoms_for_1H_nmr(n,d3v7.event.shiftKey)}else if(t.nmr_13C()){t.select_clicked_atoms_for_13C_nmr(n,d3v7.event.shiftKey)}}t.trigger("structure-click");d3v7.event.stopPropagation()});e.on("click",function(){t.selected_atoms=[];t.trigger("structure-click")})};e.prototype.select_clicked_atoms_for_1H_nmr=function(e,n){const i=this;let r=this.selected_atoms;if(n){window.getSelection().removeAllRanges();if(r.contains(e)){if(e.is("H")){const t=e.bonded_atoms(1);r=r.remove(t).remove(e)}else{e.bonded_Hs().forEach(function(t){r=r.remove(t)});r=r.remove(e)}}else{r.push(e)}}else{r=new t.SVSet(e)}i.selected_atoms=r};e.prototype.select_clicked_atoms_for_13C_nmr=function(e,n){const i=this;let r=this.selected_atoms;if(n){window.getSelection().removeAllRanges();if(r.contains(e)){r=r.remove(e)}else{r.push(e)}}else{r=new t.SVSet(e)}i.selected_atoms=r};e.prototype.toggleH=function(t){this.show_hydrogen=t===undefined?!this.show_hydrogen:t;if(this.show_hydrogen){d3v7.selectAll(".atom-H, .bond-H").style("display","inline");this.button_toggle_H.classed("button-on",true);this.button_toggle_H.text("Hide H");if(typeof Jmol!=="undefined")Jmol.script(jmol_jspectraviewer,"select all; set showHydrogens TRUE;")}else{d3v7.selectAll(".atom-H, .bond-H").style("display","none");this.button_toggle_H.classed("button-on",false);this.button_toggle_H.text("Show H");if(typeof Jmol!=="undefined")Jmol.script(jmol_jspectraviewer,"select all; set showHydrogens FALSE;")}};e.prototype.toggleAtomNumbers=function(t){this.show_atom_numbers=t===undefined?!this.show_atom_numbers:t;if(this.show_atom_numbers){d3v7.selectAll(".atom-id").style("display","inline");this.button_toggle_numbers.classed("button-on",true);this.button_toggle_numbers.text("Hide #");if(typeof Jmol!=="undefined"){if(this.nmr_nucleus==="13C"){Jmol.script(jmol_jspectraviewer,"select carbon; labels %a;")}else{Jmol.script(jmol_jspectraviewer,"select hydrogen; labels %a;")}}}else{d3v7.selectAll(".atom-id").style("display","none");
492this.button_toggle_numbers.classed("button-on",false);this.button_toggle_numbers.text("Show #");if(typeof Jmol!=="undefined"){if(this.nmr_nucleus==="13C"){Jmol.script(jmol_jspectraviewer,"select carbon; labels %e;")}else{Jmol.script(jmol_jspectraviewer,"select hydrogen; labels %e;")}}}};e.prototype.addAtomDisplayIDs=function(){const e=this;const n=new t.SVSet(e.atoms().filter(function(t){return!t.is("H")}));n.each(function(){this.morgan_num=1});let i=new t.SVSet;let r=-1;while(r!=i.unique().length){r=i.unique().length;i=new t.SVSet;n.forEach(function(t){let e=0;t.bonded_atoms().each(function(){if(!this.is("H")){e+=this.morgan_num}});t.morgan_temp=e});n.forEach(function(t){t.morgan_num=t.morgan_temp;i.push(t.morgan_num)})}n.order_by("morgan_num",true);let s=n[0];let o=1;let a;while(s){s.display_id=o;let e=s.bonded_atoms().filter(function(t){return!t.is("H")&&t.display_id==undefined});e=new t.SVSet(e);if(e.length>0){a=e.order_by("morgan_num",true)[0]}else{a=n.find(function(t){return t.display_id==undefined})}s=a;o+=1}this.addHydrogenDisplayIDs()};e.prototype.addHydrogenDisplayIDs=function(){const t=["a","b","c","d"];this.atoms().forEach(function(e){if(e.is("H")){return}e.bonded_Hs().forEach(function(n,i){n.display_id=e.display_id+t[i]})})};e.prototype.hydrogens_from_atoms=function(e){const n=new t.SVSet;e.forEach(function(t){if(t.toString()==="Atom"){if(t.is("H")){n.push(t)}else{n.merge(t.bonded_Hs())}}});return n.unique()};e.prototype.nmr_atoms_from_atoms=function(e){const n=this;if(n.nmr_1H()){return n.hydrogens_from_atoms(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};e.prototype.LCA_from_hydrogens=function(e){const n=new t.SVSet;if(!e||e.empty()){return n}const i=this.hydrogens_from_atoms(e);let r=i.map(function(t){return t.bonded_atoms(1)});r=new t.SVSet(r).unique();r.forEach(function(e){let r=true;const s=new t.SVSet;const o=e.bonded_Hs();o.forEach(function(t){if(i.contains(t)){s.push(t)}else{r=false}});if(r){n.push(e)}else{n.merge(s)}});return n.unique()};e.prototype.LCA_from_nmr_atoms=function(e){const n=this;if(n.nmr_1H()){return n.hydrogens_from_atoms(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};e.prototype.LCA_and_hydrogens=function(t){const e=this.hydrogens_from_atoms(t);const n=this.LCA_from_hydrogens(t);return e.merge(n).unique()};e.prototype.LCA_and_nmr_atoms=function(e){const n=this;if(n.nmr_1H()){return n.LCA_and_hydrogens(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};function i(e){e=e||{};this.x=t.default_for(e.x,0);this.y=t.default_for(e.y,0);this.id=e.id;this.symbol=t.default_for(e.symbol,0);this.index=t.default_for(e.index,0);this.number=t.default_for(e.number,1);this.mass=t.default_for(e.mass,0);this.charge=t.default_for(e.charge,0);this._bonds=new t.SVSet;this._bonded_Hs=new t.SVSet;this._bonded_atoms=new t.SVSet}i.prototype.toString=function(){return"Atom"};i.prototype.bonds=function(t){return this._bonds.get(t)};i.prototype.bonded_atoms=function(t){return this._bonded_atoms.get(t)};i.prototype.bonded_Hs=function(e){const n=this.bonded_atoms().filter(function(t){return t.is("H")});return new t.SVSet(n)};i.prototype.is=function(t){return this.symbol==t};i.prototype.isBondedTo=function(t){return this.bonded_atoms().some(function(e){return e.symbol==t})};i.prototype.color=function(){return d3v7.rgb(AtomColors[this.symbol])};function r(e){e=e||{};this.a1=e.a1;this.a2=e.a2;this.order=t.default_for(e.order,1);this.stereo=t.default_for(e.stereo,0);this._atoms=new t.SVSet([this.a1,this.a2])}r.prototype.toString=function(){return"Bond"};r.prototype.atoms=function(t){return this._atoms.get(t)};t.SVStructure=e})(JSpectraViewer);(function(t){function e(e,n={}){const i=this;this.sv=e;this.struct=e.structure;this.container_id=n.container_id;this.container=d3v7.select(this.container_id);this.table=this.container.append("table").classed("jsv-assignment-table",true);this.nmr_nucleus=t.default_for(n.nmr_nucleus,"1H");if(!window.Sortable){console.log("Sortable needs to be installed to make peaks/atoms dragable: https://github.com/RubaXa/Sortable");this.sortable=false}this.add_sv_events();if(this.struct){this.add_struct_events()}this.edit_mode=n.edit_mode}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.get_columns=function(){const t=this;const e=t.struct;const n=d3v7.format(".2f");const i=function(t,n){let i="";if(t&&t.length>0){const n=e.LCA_from_nmr_atoms(t);i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id='"+t.id+"'>"+t.display_id+"</div>"}).join("")}else if(n&&n.length>0){i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id=''>"+t+"</div>"}).join("")}return i};
492const r=function(t,e){return"<div class='add-atoms-container'><a class='add-atoms jsv-btn' href='javascript:void(0)'>+</a><div>"};const s=function(t){return t.reverse().map(function(t){return"<span class='jsv-badge peak-badge' data-peak-id='"+t.path_id()+"'>"+n(t.center)+"</span>"}).join("")};const o=[{heading:"Row No.","class":"cluster-number center",html:function(t){return t.number}},{heading:"Cluster Midpoint","class":"center",html:function(t){return n(t.center)}},{heading:"No. Peaks","class":"center",html:function(t){return t.peak_num}},{heading:"Coupling Type","class":"center",html:function(t){return t.multiplet_type}},{heading:"No. H's","class":"center",html:function(t){return t.atoms.length}},{heading:"Atom No.","class":"atom-cell",html:function(t){return i(t.atoms,t.atom_refs)}},{heading:"","class":"add-atom-cell",html:function(t,e){return r(t.atoms,e)}},{heading:"Peak Centers (ppm)","class":"peak-cell",html:function(t){return s(t.peaks)}}];if(t.nmr_13C()){o[4].heading="No. C's"}if(!e){o.splice(4,3)}return o};e.prototype.update_table_header=function(){this.table.select("thead").remove();this.table.append("thead").append("tr").append("th").attr("class","center").attr("style","font-size: larger").attr("colspan",this.columns.length).text("Peak Assignment Table");this.table.select("thead").append("tr").selectAll("th").data(this.columns).enter().append("th").attr("class",function(t){return t["class"]}).text(function(t){return t.heading})};e.prototype.update_table=function(){const t=this;const e=this.struct;const n=this.table;const i=this.columns;rows=[];this.sv._cluster_navigation.static_compounds=this.sv.compounds();this.sv.clusters().each(function(t){row={path_id:this.path_id(),number:t+1,center:this.center(),peak_num:this.peaks().length,peaks:this.peaks(),multiplet_type:this.multiplet_type,atoms:this.atoms(),atom_refs:this.atom_refs};rows.push(row)});n.select("tbody").remove();if(rows.length>0){n.append("tbody").selectAll("tr").data(rows).enter().append("tr").attr("data-cluster-path-id",function(t){return t.path_id}).selectAll("td").data(function(t,e){return i.map(function(n){const i={};Object.keys(n).forEach(function(r){i[r]=typeof n[r]=="function"?n[r](t,e):n[r]});return i})}).enter().append("td").html(function(t){return t.html}).attr("class",function(t){return t["class"]})}else{n.append("tbody").append("tr").append("td").attr("colspan",i.length).style("text-align","center").html("No Clusters")}this.add_table_events();d3v7.selectAll(".atom-badge").each(function(){const t=d3v7.select(this);const n=e.atoms(t.text());if(n){t.classed("atom-badge-symbol-"+n.symbol,true)}});if(t.edit_mode){this.make_sortable()}else{n.selectAll(".add-atoms").style("display","none")}};e.prototype.make_sortable=function(){const e=this;const n=this.table;const i=this.struct;n.classed("editable",true);n.selectAll("tbody tr .atom-cell").each(function(){Sortable.create(this,{draggable:".atom-badge",group:"atoms",animation:150,ghostClass:"badge-ghost",onAdd:function(n){let r;const s=e.cluster_from_table_child(n.item);const o=e.cluster_from_table_child(n.from);const a=d3v7.select(n.item).attr("data-atom-id");if(a){r=i.atoms(a)}if(r&&s&&o){const n=i.nmr_atoms_from_atoms([r]);atoms=s.atoms().merge(n).unique();s._atoms=atoms;o._atoms=new t.SVSet(o._atoms.filter(function(t){return!n.contains(t)}));e.update_table()}e.select_peaks_and_atoms(e.selected_atoms)},onEnd:function(n){const r=d3v7.select(n.item).attr("data-atom-id");if(r){atom=i.atoms(r);e.selected_atoms=new t.SVSet(atom);e.select_peaks_and_atoms(e.selected_atoms)}}})});n.selectAll("tbody tr td.peak-cell").each(function(){Sortable.create(this,{draggable:".peak-badge",group:"peaks",animation:150,ghostClass:"badge-ghost",onAdd:function(t){let n;const i=e.cluster_from_table_child(t.item);const r=e.cluster_from_table_child(t.from);const s=d3v7.select(t.item).attr("data-peak-id");if(s){n=sv.peaks(s)}if(n&&i&&r){n["delete"]();i.add_peak(n);i.update();if(sv._cluster_navigation){sv._cluster_navigation.update_table()}e.update_table()}e.select_peaks_and_atoms(e.selected_peaks)},onEnd:function(n){const i=d3v7.select(n.item).attr("data-peak-id");if(i){peak=sv.peaks(i);e.selected_peaks=new t.SVSet(peak);e.select_peaks_and_atoms(e.selected_peaks)}}})})};e.prototype.add_table_events=function(){const e=this;const n=this.table;const i=this.sv;const r=this.struct;n.selectAll("tbody tr").on("click",function(){n.selectAll("tbody tr").classed("selected",fal
492se);d3v7.select(this).classed("selected",true);const t=d3v7.select(this).attr("data-cluster-path-id");const r=i.clusters(t);e.select_peaks_and_atoms(r);i.move_to_peaks(r.peaks(),i._cluster_navigation.speed,2)});n.selectAll("tbody .atom-badge").on("click",function(){let n=e.selected_atoms;const s=d3v7.select(this).attr("data-atom-id");const o=r.atoms(s);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(o)){n=n.remove(o)}else{n.push(o)}}else{n=new t.SVSet(o)}e.selected_atoms=n;e.select_peaks_and_atoms(e.selected_atoms);i.move_to_peaks(e.cluster_from_atoms(e.selected_atoms).peaks(),i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody .peak-badge").on("click",function(){let n=e.selected_peaks;const r=d3v7.select(this).attr("data-peak-id");const s=i.peaks(r);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(s)){n=n.remove(s)}else{n.push(s)}}else{n=new t.SVSet(s)}e.selected_peaks=n;e.select_peaks_and_atoms(e.selected_peaks);i.move_to_peaks(e.selected_peaks,i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody tr .add-atoms").on("click",function(){const t=e.cluster_from_table_child(this);if(t){t._atoms=r.nmr_atoms_from_atoms(r.selected_atoms)}d3v7.event.stopPropagation();e.update_table();e.select_peaks_and_atoms(t);return false})};e.prototype.add_sv_events=function(){const t=this;const e=t.struct;const n=t.sv;n.on("adjust-end.assign",function(){t.update_table();t.select_peaks_and_atoms(n.selection.peaks())});n.on("adjust-peak-created.assign",function(t){const n=t.cluster();if(n.peaks().length==1){n._atoms=e.nmr_atoms_from_atoms(e.selected_atoms)}});n.on("selection-add.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-remove.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-clear.assign",function(){t.select_peaks_and_atoms(undefined)})};e.prototype.add_struct_events=function(){const t=this;const e=this.struct;e.on("structure-click.assign",function(){e.selected_atoms=e.LCA_and_nmr_atoms(e.selected_atoms);t.select_peaks_and_atoms(e.selected_atoms)})};e.prototype.select_peaks_and_atoms=function(e){const n=this;const i=this.sv;const r=this.struct;const s=this.table;let o;let a=new t.SVSet;let l=new t.SVSet;if(e){if(e.toString()=="Cluster"){o=e}else if(e.toString()=="SVSet"||Array.isArray(e)){const t=e[0];if(t){if(e[0].toString()=="Atom"){l=e}else if(e[0].toString()=="Peak"){a=e}}}else{console.log("Unknown Selection")}}if(a.present()){o=this.cluster_from_peaks(a)}if(l.present()){o=this.cluster_from_atoms(l)}if(o){a=o.peaks();l=o.atoms()}if(r){if(r.use_jsmol&&typeof Jmol!=="undefined"){if(r.nmr_1H()){let t=r.LCA_from_hydrogens(l);Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${t[0].id.replace(/\D/g,"")}; colour halos blue;`)}else{Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${l[0].id.replace(/\D/g,"")}; colour halos blue;`)}}else{r.selected_atoms=r.LCA_and_nmr_atoms(l)}}i.selection._elements=a.unique();i.draw();n.selected_peaks=a;if(r){n.selected_atoms=r.LCA_from_nmr_atoms(l)}
492s.selectAll("tbody tr").classed("selected",false);if(o){s.select("tbody tr[data-cluster-path-id="+o.path_id()+"]").classed("selected",true)}};e.prototype.cluster_from_peaks=function(t){let e;this.sv.clusters().forEach(function(n){if(n.peaks().equals(t)){e=n}});return e};e.prototype.cluster_from_atoms=function(t){let e;const n=this.struct;const i=n.nmr_atoms_from_atoms(t);this.sv.clusters().forEach(function(t){const r=n.nmr_atoms_from_atoms(t.atoms());if(r.equals(i)){e=t}});return e};e.prototype.cluster_from_table_child=function(t){if(!t){return}let e;let n=false;let i=t;while(!n){localName=i.localName.toUpperCase();if(localName=="TR"){n=true;const t=d3v7.select(i).attr("data-cluster-path-id");if(t){e=this.sv.clusters(t)}}else if(localName=="TABLE"){n=true}else{i=i.parentNode;if(!i){n=true}}}return e};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom-badge.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.struct.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
492n.selectAll(".atom-badge").classed("selected",false);t.forEach(function(t){n.selectAll('.atom-badge[data-atom-id="'+t.id+'"]').classed("selected",true)})}},selected_peaks:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".peak-badge.selected").each(function(){const t=d3v7.select(this).attr("data-peak-id");n.push(e.sv.peaks(t))});return n},set:function(t){const e=this;const n=this.container 493;n.selectAll(".peak-badge").classed("selected",false);t.forEach(function(t){n.select('.peak-badge[data-peak-id="'+t.path_id()+'"]').classed("selected",true)})}},edit_mode:{get:function(){return this._edit_mode},set:function(t){const e=this;const n=e.sv;e._edit_mode=t;if(e._edit_mode){n.selection.element_type="peak";n.selection.allow_multiselect=true;n.selection.allow_adjust=true;n.selection.allow_width_adjust=true;n.selection.allow_peak_creation=true;if(n.highlight)n.highlight.element_type="peak"}else{n.selection.element_type="cluster";n.selection.allow_multiselect=true;n.selection.allow_adjust=false;n.selection.allow_width_adjust=false;n.selection.allow_peak_creation=false;if(n.highlight)n.highlight.element_type="cluster"}e.update_table();e.select_peaks_and_atoms(n.selection.peaks());n.draw()}},nmr_nucleus:{get:function(){return this._nmr_nucleus},set:function(t){this._nmr_nucleus=t;this.columns=this.get_columns();if(this.struct)this.struct.nmr_nucleus=t;this.update_table_header();this.update_table()}}});t.SVAssignments=e})(JSpectraViewer);(function(t){function e(t,e={}){const n=this;this.sv=t;this.struct=t.structure;this.container_id=e.container_id;this.container=d3v7.select(this.container_id);this.table=this.container.append("table").classed("jsv-assignment-table",true);this.nmr_nucleus="2D";if(!window.Sortable){console.log("Sortable needs to be installed to make peaks/atoms dragable: https://github.com/RubaXa/Sortable");this.sortable=false}this.add_sv_events();if(this.struct){this.add_struct_events()}this.edit_mode=e.edit_mode}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.get_columns=function(){const t=this;const e=t.struct;const n=d3v7.format(".2f");const i=function(t,n){let i="";if(t&&t.length>0){const n=e.LCA_from_nmr_atoms(t);i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id='"+t.id+"'>"+t.display_id+"</div>"}).join("")}else if(n&&n.length>0){i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id=''>"+t+"</div>"}).join("")}return i};const r=function(t,e){return"<div class='add-atoms-container'><a class='add-atoms jsv-btn' href='javascript:void(0)'>+</a><div>"};const s=function(t){return t.reverse().map(function(t){return"<span class='jsv-badge peak-badge' data-peak-id='"+t.path_id()+"'>"+n(t.center)+"</span>"}).join("")};const o=[{heading:"Row No.","class":"cluster-number center",html:function(t){return t.number}},{heading:"Dir. Dim. Center","class":"center",html:function(t){return n(t.peaks[0])}},{heading:"Indir. Dim. Center","class":"center",html:function(t){return n(t.peaks[1])}},{heading:"Coupling Type","class":"center",html:function(t){return t.multiplet_type}},{heading:"Dir. Dim. Atom No.","class":"atom-cell center",html:function(t){return i(t.atoms,t.dir_dim_atom_refs)}},{heading:"Indir. Dim. Atom No.","class":"atom-cell center",html:function(t){return i(t.atoms,t.indir_dim_atom_refs)}}];return o};e.prototype.update_table_header=function(){this.table.select("thead").remove();this.table.append("thead").append("tr").append("th").attr("class","center").attr("style","font-size: larger").attr("colspan",this.columns.length).text("Peak Assignment Table");this.table.select("thead").append("tr").selectAll("th").data(this.columns).enter().append("th").attr("class",function(t){return t["class"]}).text(function(t){return t.heading})};e.prototype.update_table=function(){const t=this;const e=this.struct;const n=this.table;const i=this.columns;rows=[];this.sv._cluster_navigation.static_compounds=this.sv.compounds();this.sv.clusters().each(function(t){row={path_id:this.path_id(),number:t+1,center:this.center(),peak_num:this.peaks().length,peaks:this.peaks(),multiplet_type:this.multiplet_type,atoms:this.atoms(),dir_dim_atom_refs:this.dir_dim_atom_refs(),indir_dim_atom_refs:this.indir_dim_atom_refs()};rows.push(row)});n.select("tbody").remove();if(rows.length>0){n.append("tbody").selectAll("tr").data(rows).enter().append("tr").attr("data-cluster-path-id",function(t){return t.path_id}).selectAll("td").data(function(t,e){return i.map(function(n){const i={};
493Object.keys(n).forEach(function(r){i[r]=typeof n[r]=="function"?n[r](t,e):n[r]});return i})}).enter().append("td").html(function(t){return t.html}).attr("class",function(t){return t["class"]})}else{n.append("tbody").append("tr").append("td").attr("colspan",i.length).style("text-align","center").html("No Clusters")}this.add_table_events();d3v7.selectAll(".atom-badge").each(function(){const t=d3v7.select(this);const n=e.atoms(t.text());if(n){t.classed("atom-badge-symbol-"+n.symbol,true)}});if(t.edit_mode){this.make_sortable()}else{n.selectAll(".add-atoms").style("display","none")}};e.prototype.make_sortable=function(){const e=this;const n=this.table;const i=this.struct;n.classed("editable",true);n.selectAll("tbody tr .atom-cell").each(function(){Sortable.create(this,{draggable:".atom-badge",group:"atoms",animation:150,ghostClass:"badge-ghost",onAdd:function(n){let r;const s=e.cluster_from_table_child(n.item);const o=e.cluster_from_table_child(n.from);const a=d3v7.select(n.item).attr("data-atom-id");if(a){r=i.atoms(a)}if(r&&s&&o){const n=i.nmr_atoms_from_atoms([r]);atoms=s.atoms().merge(n).unique();s._atoms=atoms;o._atoms=new t.SVSet(o._atoms.filter(function(t){return!n.contains(t)}));e.update_table()}e.select_peaks_and_atoms(e.selected_atoms)},onEnd:function(n){const r=d3v7.select(n.item).attr("data-atom-id");if(r){atom=i.atoms(r);e.selected_atoms=new t.SVSet(atom);e.select_peaks_and_atoms(e.selected_atoms)}}})});n.selectAll("tbody tr td.peak-cell").each(function(){Sortable.create(this,{draggable:".peak-badge",group:"peaks",animation:150,ghostClass:"badge-ghost",onAdd:function(t){let n;const i=e.cluster_from_table_child(t.item);const r=e.cluster_from_table_child(t.from);const s=d3v7.select(t.item).attr("data-peak-id");if(s){n=sv.peaks(s)}if(n&&i&&r){n["delete"]();i.add_peak(n);i.update();if(sv._cluster_navigation){sv._cluster_navigation.update_table()}e.update_table()}e.select_peaks_and_atoms(e.selected_peaks)},onEnd:function(n){const i=d3v7.select(n.item).attr("data-peak-id");if(i){peak=sv.peaks(i);e.selected_peaks=new t.SVSet(peak);e.select_peaks_and_atoms(e.selected_peaks)}}})})};e.prototype.add_table_events=function(){const e=this;const n=this.table;const i=this.sv;const r=this.struct;n.selectAll("tbody tr").on("click",function(){n.selectAll("tbody tr").classed("selected",fal
493se);d3v7.select(this).classed("selected",true);const t=d3v7.select(this).attr("data-cluster-path-id");const r=i.clusters(t);e.select_peaks_and_atoms(r);i.move_to_peaks(r.peaks(),i._cluster_navigation.speed,2)});n.selectAll("tbody .atom-badge").on("click",function(){let n=e.selected_atoms;const s=d3v7.select(this).attr("data-atom-id");const o=r.atoms(s);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(o)){n=n.remove(o)}else{n.push(o)}}else{n=new t.SVSet(o)}e.selected_atoms=n;e.select_peaks_and_atoms(e.selected_atoms);i.move_to_peaks(e.cluster_from_atoms(e.selected_atoms).peaks(),i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody .peak-badge").on("click",function(){let n=e.selected_peaks;const r=d3v7.select(this).attr("data-peak-id");const s=i.peaks(r);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(s)){n=n.remove(s)}else{n.push(s)}}else{n=new t.SVSet(s)}e.selected_peaks=n;e.select_peaks_and_atoms(e.selected_peaks);i.move_to_peaks(e.selected_peaks,i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody tr .add-atoms").on("click",function(){const t=e.cluster_from_table_child(this);if(t){t._atoms=r.nmr_atoms_from_atoms(r.selected_atoms)}d3v7.event.stopPropagation();e.update_table();e.select_peaks_and_atoms(t);return false})};e.prototype.add_sv_events=function(){const t=this;const e=t.struct;const n=t.sv;n.on("adjust-end.assign",function(){t.update_table();t.select_peaks_and_atoms(n.selection.peaks())});n.on("adjust-peak-created.assign",function(t){const n=t.cluster();if(n.peaks().length==1){n._atoms=e.nmr_atoms_from_atoms(e.selected_atoms)}});n.on("selection-add.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-remove.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-clear.assign",function(){t.select_peaks_and_atoms(undefined)})};e.prototype.add_struct_events=function(){const t=this;const e=this.struct;e.on("structure-click.assign",function(){e.selected_atoms=e.LCA_and_nmr_atoms(e.selected_atoms);t.select_peaks_and_atoms(e.selected_atoms)})};e.prototype.select_peaks_and_atoms=function(e){const n=this;const i=this.sv;const r=this.struct;const s=this.table;let o;let a=new t.SVSet;let l=new t.SVSet;if(e){if(e.toString()=="Cluster"){o=e}else if(e.toString()=="SVSet"||Array.isArray(e)){const t=e[0];if(t){if(e[0].toString()=="Atom"){l=e}else if(e[0].toString()=="Peak"){a=e}}}else{console.log("Unknown Selection")}}if(a.present()){o=this.cluster_from_peaks(a)}if(l.present()){o=this.cluster_from_atoms(l)}if(o){a=o.peaks();l=o.atoms()}if(r){if(r.use_jsmol&&typeof Jmol!=="undefined"){if(r.nmr_1H()){let t=r.LCA_from_hydrogens(l);Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${t[0].id.replace(/\D/g,"")}; colour halos blue;`)}else{Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${l[0].id.replace(/\D/g,"")}; colour halos blue;`)}}else{r.selected_atoms=r.LCA_and_nmr_atoms(l)}}i.selection._elements=a.unique();i.draw();n.selected_peaks=a;if(r){n.selected_atoms=r.LCA_from_nmr_atoms(l)}
493s.selectAll("tbody tr").classed("selected",false);if(o){s.select("tbody tr[data-cluster-path-id="+o.path_id()+"]").classed("selected",true)}};e.prototype.cluster_from_peaks=function(t){let e;this.sv.clusters().forEach(function(n){if(n.peaks().equals(t)){e=n}});return e};e.prototype.cluster_from_atoms=function(t){let e;const n=this.struct;const i=n.nmr_atoms_from_atoms(t);this.sv.clusters().forEach(function(t){const r=n.nmr_atoms_from_atoms(t.atoms());if(r.equals(i)){e=t}});return e};e.prototype.cluster_from_table_child=function(t){if(!t){return}let e;let n=false;let i=t;while(!n){localName=i.localName.toUpperCase();if(localName=="TR"){n=true;const t=d3v7.select(i).attr("data-cluster-path-id");if(t){e=this.sv.clusters(t)}}else if(localName=="TABLE"){n=true}else{i=i.parentNode;if(!i){n=true}}}return e};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom-badge.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.struct.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
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538i){var r=t.aoData[e].anCells;return r?r[i]:n},1)});a("cells().data()",function(){return this.iterator("cell",function(t,e,n){return J(t,e,n)},1)});l("cells().cache()","cell().cache()",function(t){t=t==="search"?"_aFilterData":"_aSortData";return this.iterator("cell",function(e,n,i){ 539return e.aoData[n][t][i]},1)});l("cells().render()","cell().render()",function(t){return this.iterator("cell",function(e,n,i){return J(e,n,i,t)},1)});l("cells().indexes()","cell().index()",function(){return this.iterator("cell",function(t,e,n){return{row:e,column:n,columnVisible:O(t,n)}},1)});l("cells().invalidate()","cell().invalidate()",function(t){return this.iterator("cell",function(e,n,i){st(e,n,t,i)})});a("cell()",function(t,e,n){return Te(this.cells(t,e,n))});a("cell().data()",function(t){var e=this.context;var i=this[0];if(t===n){return e.length&&i.length?J(e[0],i[0].row,i[0].column):n}G(e[0],i[0].row,i[0].column,t);st(e[0],i[0].row,"data",i[0].column);return this});a("order()",function(t,e){var r=this.context;if(t===n){return r.length!==0?r[0].aaSorting:n}if(typeof t==="number"){t=[[t,e]]}else if(!i.isArray(t[0])){t=Array.prototype.slice.call(arguments)}return this.iterator("table",function(e){e.aaSorting=t.slice()})});a("order.listener()",function(t,e,n){return this.iterator("table",function(i){re(i,t,e,n)})});a(["columns().order()","column().order()"],function(t){var e=this;return this.iterator("table",function(n,r){var s=[];i.each(e[r],function(e,n){s.push([n,t])});n.aaSorting=s})});a("search()",function(t,e,r,s){var o=this.context;if(t===n){return o.length!==0?o[0].oPreviousSearch.sSearch:n}return this.iterator("table",function(n){if(!n.oFeatures.bFilter){return}wt(n,i.extend({},n.oPreviousSearch,{sSearch:t+"",bRegex:e===null?false:e,bSmart:r===null?true:r,bCaseInsensitive:s===null?true:s}),1)})});l("columns().search()","column().search()",function(t,e,r,s){return this.iterator("column",function(o,a){var l=o.aoPreSearchCols;if(t===n){return l[a].sSearch}if(!o.oFeatures.bFilter){return}i.extend(l[a],{sSearch:t+"",bRegex:e===null?false:e,bSmart:r===null?true:r,bCaseInsensitive:s===null?true:s});wt(o,o.oPreviousSearch,1)})});a("state()",function(){return this.context.length?this.context[0].oSavedState:null});a("state.clear()",function(){return this.iterator("table",function(t){t.fnStateSaveCallback.call(t.oInstance,t,{})})});a("state.loaded()",function(){return this.context.length?this.context[0].oLoadedState:null});a("state.save()",function(){return this.iterator("table",function(t){ae(t)})});r.versionCheck=r.fnVersionCheck=function(t){var e=r.version.split(".");var n=t.split(".");var i,s;for(var o=0,a=n.length;o<a;o++){i=parseInt(e[o],10)||0;s=parseInt(n[o],10)||0;if(i===s){continue}return i>s}return true};r.isDataTable=r.fnIsDataTable=function(t){var e=i(t).get(0);var n=false;i.each(r.settings,function(t,r){var s=r.nScrollHead?i("table",r.nScrollHead)[0]:null;var o=r.nScrollFoot?i("table",r.nScrollFoot)[0]:null;if(r.nTable===e||s===e||o===e){n=true}});return n};r.tables=r.fnTables=function(t){var e=false;if(i.isPlainObject(t)){e=t.api;t=t.visible}var n=i.map(r.settings,function(e){if(!t||t&&i(e.nTable).is(":visible")){return e.nTable}});return e?new o(n):n};r.util={throttle:Jt,escapeRegex:Ct};r.camelToHungarian=D;a("$()",function(t,e){var n=this.rows(e).nodes(),r=i(n);return i([].concat(r.filter(t).toArray(),r.find(t).toArray()))});i.each(["on","one","off"],function(t,e){a(e+"()",function(){var t=Array.prototype.slice.call(arguments);if(!t[0].match(/\.dt\b/)){t[0]+=".dt"}var n=i(this.tables().nodes());n[e].apply(n,t);return this})});a("clear()",function(){return this.iterator("table",function(t){it(t)})});a("settings()",function(){return new o(this.context,this.context)});a("init()",function(){var t=this.context;return t.length?t[0].oInit:null});a("data()",function(){return this.iterator("table",function(t){return w(t.aoData,"_aData")}).flatten()});a("destroy()",function(e){e=e||false;return this.iterator("table",function(n){var s=n.nTableWrapper.parentNode;var a=n.oClasses;var l=n.nTable;var c=n.nTBody;var u=n.nTHead;var h=n.nTFoot;var f=i(l);var d=i(c);var p=i(n.nTableWrapper);var m=i.map(n.aoData,function(t){return t.nTr});var g,_;n.bDestroying=true;me(n,"aoDestroyCallback","destroy",[n]);if(!e){new o(n).columns().visible(true)}p.unbind(".DT").find(":not(tbody *)").unbind(".DT");i(t).unbind(".DT-"+n.sInstance);if(l!=u.parentNode){f.children("thead").detach();f.append(u)}if(h&&l!=h.parentNode){f.children("tfoot").detach();f.append(h)}n.aaSorting=[];n.aaSortingFixed=[];se(n);i(m).removeClass(n.asStripeClasses.join(" "));i("th, td",u).removeClass(a.sSortable+" "+a.sSortableAsc+" "+a.sSortableDesc+" "+a.sSortableNone);if(n.bJUI){i("th span."+a.sSortIcon+", td span."+a.sSortIcon,u).detach();i("th, td",u).each(function(){var t=i("div."+a.sSortJUIWrapper,this);i(this).append(t.contents());t.detach()})}d.children().detach();d.append(m);var v=e?"remove":"detach";f[v]();p[v]();
539if(!e&&s){s.insertBefore(l,n.nTableReinsertBefore);f.css("width",n.sDestroyWidth).removeClass(a.sTable);_=n.asDestroyStripes.length;if(_){d.children().each(function(t){i(this).addClass(n.asDestroyStripes[t%_])})}}var y=i.inArray(n,r.settings);if(y!==-1){r.settings.splice(y,1)}})});i.each(["column","row","cell"],function(t,e){a(e+"s().every()",function(t){return this.iterator(e,function(i,r,s,a,l){t.call(new o(i)[e](r,e==="cell"?s:n),r,s,a,l)})})});a("i18n()",function(t,e,r){var s=this.context[0];var o=tt(t)(s.oLanguage);if(o===n){o=e}if(r!==n&&i.isPlainObject(o)){o=o[r]!==n?o[r]:o._}return o.replace("%d",r)});r.version="1.10.9";r.settings=[];r.models={};r.models.oSearch={bCaseInsensitive:true,sSearch:"",bRegex:false,bSmart:true};r.models.oRow={nTr:null,anCells:null,_aData:[],_aSortData:null,_aFilterData:null,_sFilterRow:null,_sRowStripe:"",src:null,idx:-1};r.models.oColumn={idx:null,aDataSort:null,asSorting:null,bSearchable:null,bSortable:null,bVisible:null,_sManualType:null,_bAttrSrc:false,fnCreatedCell:null,fnGetData:null,fnSetData:null,mData:null,mRender:null,nTh:null,nTf:null,sClass:null,sContentPadding:null,sDefaultContent:null,sName:null,sSortDataType:"std",sSortingClass:null,sSortingClassJUI:null,sTitle:null,sType:null,sWidth:null,sWidthOrig:null};r.defaults={aaData:null,aaSorting:[[0,"asc"]],aaSortingFixed:[],ajax:null,aLengthMenu:[10,25,50,100],aoColumns:null,aoColumnDefs:null,aoSearchCols:[],asStripeClasses:null,bAutoWidth:true,bDeferRender:false,bDestroy:false,bFilter:true,bInfo:true,bJQueryUI:false,bLengthChange:true,bPaginate:true,bProcessing:false,bRetrieve:false,bScrollCollapse:false,bServerSide:false,bSort:true,bSortMulti:true,bSortCellsTop:false,bSortClasses:true,bStateSave:false,fnCreatedRow:null,fnDrawCallback:null,fnFooterCallback:null,fnFormatNumber:function(t){return t.toString().replace(/\B(?=(\d{3})+(?!\d))/g,this.oLanguage.sThousands)},fnHeaderCallback:null,fnInfoCallback:null,fnInitComplete:null,fnPreDrawCallback:null,fnRowCallback:null,fnServerData:null,fnServerParams:null,fnStateLoadCallback:function(t){try{return JSON.parse((t.iStateDuration===-1?sessionStorage:localStorage).getItem("DataTables_"+t.sInstance+"_"+location.pathname))}catch(e){}},fnStateLoadParams:null,fnStateLoaded:null,fnStateSaveCallback:function(t,e){try{(t.iStateDuration===-1?sessionStorage:localStorage).setItem("DataTables_"+t.sInstance+"_"+location.pathname,JSON.stringify(e))}catch(n){}},fnStateSaveParams:null,iStateDuration:7200,iDeferLoading:null,iDisplayLength:10,iDisplayStart:0,iTabIndex:0,oClasses:{},oLanguage:{oAria:{sSortAscending:": activate to sort column ascending",sSortDescending:": activate to sort column descending"},oPaginate:{sFirst:"First",sLast:"Last",sNext:"Next",sPrevious:"Previous"},sEmptyTable:"No data available in table",sInfo:"Showing _START_ to _END_ of _TOTAL_ entries",sInfoEmpty:"Showing 0 to 0 of 0 entries",sInfoFiltered:"(filtered from _MAX_ total entries)",sInfoPostFix:"",sDecimal:"",sThousands:",",sLengthMenu:"Show _MENU_ entries",sLoadingRecords:"Loading...",sProcessing:"Processing...",sSearch:"Search:",sSearchPlaceholder:"",sUrl:"",sZeroRecords:"No matching records found"},oSearch:i.extend({},r.models.oSearch),sAjaxDataProp:"data",sAjaxSource:null,sDom:"lfrtip",searchDelay:null,sPaginationType:"simple_numbers",sScrollX:"",sScrollXInner:"",sScrollY:"",sServerMethod:"GET",renderer:null,rowId:"DT_RowId"};A(r.defaults);r.defaults.column={aDataSort:null,iDataSort:-1,asSorting:["asc","desc"],bSearchable:true,bSortable:true,bVisible:true,fnCreatedCell:null,mData:null,mRender:null,sCellType:"td",sClass:"",sContentPadding:"",sDefaultContent:null,sName:"",sSortDataType:"std",sTitle:null,sType:null,sWidth:null};A(r.defaults.column);r.models.oSettings={oFeatures:{bAutoWidth:null,bDeferRender:null,bFilter:null,bInfo:null,bLengthChange:null,bPaginate:null,bProcessing:null,bServerSide:null,bSort:null,bSortMulti:null,bSortClasses:null,bStateSave:null},oScroll:{bCollapse:null,iBarWidth:0,sX:null,sXInner:null,sY:null},oLanguage:{fnInfoCallback:null},oBrowser:{bScrollOversize:false,bScrollbarLeft:false,bBounding:false,barWidth:0},ajax:null,aanFeatures:[],aoData:[],aiDisplay:[],aiDisplayMaster:[],aIds:{},aoColumns:[],aoHeader:[],aoFooter:[],oPreviousSearch:{},aoPreSearchCols:[],aaSorting:null,aaSortingFixed:[],asStripeClasses:null,asDestroyStripes:[],sDestroyWidth:0,aoRowCallback:[],aoHeaderCallback:[],aoFooterCallback:[],aoDrawCallback:[],aoRowCreatedCallback:[],aoPreDrawCallback:[],aoInitComplete:[],aoStateSaveParams:[],aoStateLoadParams:[],aoStateLoaded:[],sTableId:"",nTable:null,nTHead:null,nTFoot:null,nTBody:null,nTableWrapper:null,bDeferLoading:false,bInitialised:false,aoOpenRows:[],sDom:null,searchDelay:null,sPaginationType:"two_button",iStateDuration:0,aoStateSave:[],aoStateLoad:[],oSavedState:null,oLoadedState:null,sAjaxSource:null,sAjaxDataProp:null,bAjaxDataGet:true,jqXHR:null,json:n,oAjaxD
539ata:n,fnServerData:null,aoServerParams:[],sServerMethod:null,fnFormatNumber:null,aLengthMenu:null,iDraw:0,bDrawing:false,iDrawError:-1,_iDisplayLength:10,_iDisplayStart:0,_iRecordsTotal:0,_iRecordsDisplay:0,bJUI:null,oClasses:{},bFiltered:false,bSorted:false,bSortCellsTop:null,oInit:null,aoDestroyCallback:[],fnRecordsTotal:function(){return ve(this)=="ssp"?this._iRecordsTotal*1:this.aiDisplayMaster.length},fnRecordsDisplay:function(){return ve(this)=="ssp"?this._iRecordsDisplay*1:this.aiDisplay.length},fnDisplayEnd:function(){var t=this._iDisplayLength,e=this._iDisplayStart,n=e+t,i=this.aiDisplay.length,r=this.oFeatures,s=r.bPaginate;if(r.bServerSide){return s===false||t===-1?e+i:Math.min(e+t,this._iRecordsDisplay)}else{return!s||n>i||t===-1?i:n}},oInstance:null,sInstance:null,iTabIndex:0,nScrollHead:null,nScrollFoot:null,aLastSort:[],oPlugins:{},rowIdFn:null,rowId:null};r.ext=s={buttons:{},classes:{},errMode:"alert",feature:[],search:[],selector:{cell:[],column:[],row:[]},internal:{},legacy:{ajax:null},pager:{},renderer:{pageButton:{},header:{}},order:{},type:{detect:[],search:{},order:{}},_unique:0,fnVersionCheck:r.fnVersionCheck,iApiIndex:0,oJUIClasses:{},sVersion:r.version};i.extend(s,{afnFiltering:s.search,aTypes:s.type.detect,ofnSearch:s.type.search,oSort:s.type.order,afnSortData:s.order,aoFeatures:s.feature,oApi:s.internal,oStdClasses:s.classes,oPagination:s.pager});i.extend(r.ext.classes,{sTable:"dataTable",sNoFooter:"no-footer",sPageButton:"paginate_button",sPageButtonActive:"current",sPageButtonDisabled:"disabled",sStripeOdd:"odd",sStripeEven:"even",sRowEmpty:"dataTables_empty",sWrapper:"dataTables_wrapper",sFilter:"dataTables_filter",sInfo:"dataTables_info",sPaging:"dataTables_paginate paging_",sLength:"dataTables_length",sProcessing:"dataTables_processing",sSortAsc:"sorting_asc",sSortDesc:"sorting_desc",sSortable:"sorting",sSortableAsc:"sorting_asc_disabled",sSortableDesc:"sorting_desc_disabled",sSortableNone:"sorting_disabled",sSortColumn:"sorting_",sFilterInput:"",sLengthSelect:"",sScrollWrapper:"dataTables_scroll",sScrollHead:"dataTables_scrollHead",sScrollHeadInner:"dataTables_scrollHeadInner",sScrollBody:"dataTables_scrollBody",sScrollFoot:"dataTables_scrollFoot",sScrollFootInner:"dataTables_scrollFootInner",sHeaderTH:"",sFooterTH:"",sSortJUIAsc:"",sSortJUIDesc:"",sSortJUI:"",sSortJUIAscAllowed:"",sSortJUIDescAllowed:"",sSortJUIWrapper:"",sSortIcon:"",sJUIHeader:"",sJUIFooter:""});(function(){var t="";t="";var e=t+"ui-state-default";var n=t+"css_right ui-icon ui-icon-";var s=t+"fg-toolbar ui-toolbar ui-widget-header ui-helper-clearfix";i.extend(r.ext.oJUIClasses,r.ext.classes,{sPageButton:"fg-button ui-button "+e,sPageButtonActive:"ui-state-disabled",sPageButtonDisabled:"ui-state-disabled",sPaging:"dataTables_paginate fg-buttonset ui-buttonset fg-buttonset-multi "+"ui-buttonset-multi paging_",sSortAsc:e+" sorting_asc",sSortDesc:e+" sorting_desc",sSortable:e+" sorting",sSortableAsc:e+" sorting_asc_disabled",sSortableDesc:e+" sorting_desc_disabled",sSortableNone:e+" sorting_disabled",sSortJUIAsc:n+"triangle-1-n",sSortJUIDesc:n+"triangle-1-s",sSortJUI:n+"carat-2-n-s",sSortJUIAscAllowed:n+"carat-1-n",sSortJUIDescAllowed:n+"carat-1-s",sSortJUIWrapper:"DataTables_sort_wrapper",sSortIcon:"DataTables_sort_icon",sScrollHead:"dataTables_scrollHead "+e,sScrollFoot:"dataTables_scrollFoot "+e,sHeaderTH:e,sFooterTH:e,sJUIHeader:s+" ui-corner-tl ui-corner-tr",sJUIFooter:s+" ui-corner-bl ui-corner-br"})})();var He=r.ext.pager;function Ve(t,e){var n=[],i=He.numbers_length,r=Math.floor(i/2),s=1;if(e<=i){n=S(0,e)}else if(t<=r){n=S(0,i-2);n.push("ellipsis");n.push(e-1)}else if(t>=e-1-r){n=S(e-(i-2),e);n.splice(0,0,"ellipsis");n.splice(0,0,0)}else{n=S(t-r+2,t+r-1);n.push("ellipsis");n.push(e-1);n.splice(0,0,"ellipsis");n.splice(0,0,0)}n.DT_el="span";return n}i.extend(He,{simple:function(t,e){return["previous","next"]},full:function(t,e){return["first","previous","next","last"]},numbers:function(t,e){return[Ve(t,e)]},simple_numbers:function(t,e){return["previous",Ve(t,e),"next"]},full_numbers:function(t,e){return["first","previous",Ve(t,e),"next","last"]},_numbers:Ve,numbers_length:7});i.extend(true,r.ext.renderer,{pageButton:{_:function(t,n,r,s,o,a){var l=t.oClasse
539s;var c=t.oLanguage.oPaginate;var u,h,f=0;var d=function(e,n){var s,p,m,g;var _=function(e){Ht(t,e.data.action,true)};for(s=0,p=n.length;s<p;s++){g=n[s];if(i.isArray(g)){var v=i("<"+(g.DT_el||"div")+"/>").appendTo(e);d(v,g)}else{u=null;h="";switch(g){case"ellipsis":e.append('<span class="ellipsis">…</span>');break;case"first":u=c.sFirst;h=g+(o>0?"":" "+l.sPageButtonDisabled);break;case"previous":u=c.sPrevious;h=g+(o>0?"":" "+l.sPageButtonDisabled);break;case"next":u=c.sNext;h=g+(o<a-1?"":" "+l.sPageButtonDisabled);break;case"last":u=c.sLast;h=g+(o<a-1?"":" "+l.sPageButtonDisabled);break;default:u=g+1;h=o===g?l.sPageButtonActive:"";break}if(u!==null){m=i("<a>",{"class":l.sPageButton+" "+h,"aria-controls":t.sTableId,"data-dt-idx":f,tabindex:t.iTabIndex,id:r===0&&typeof g==="string"?t.sTableId+"_"+g:null}).html(u).appendTo(e);de(m,{action:g},_);f++}}}};var p;try{p=i(n).find(e.activeElement).data("dt-idx")}catch(m){}d(i(n).empty(),s);if(p){i(n).find("[data-dt-idx="+p+"]").focus()}}}});i.extend(r.ext.type.detect,[function(t,e){var n=e.oLanguage.sDecimal;return y(t,n)?"num"+n:null},function(t,e){if(t&&!(t instanceof Date)&&(!f.test(t)||!d.test(t))){return null}var n=Date.parse(t);return n!==null&&!isNaN(n)||g(t)?"date":null},function(t,e){var n=e.oLanguage.sDecimal;return y(t,n,true)?"num-fmt"+n:null},function(t,e){var n=e.oLanguage.sDecimal;return x(t,n)?"html-num"+n:null},function(t,e){var n=e.oLanguage.sDecimal;return x(t,n,true)?"html-num-fmt"+n:null},function(t,e){return g(t)||typeof t==="string"&&t.indexOf("<")!==-1?"html":null}]);i.extend(r.ext.type.search,{html:function(t){return g(t)?t:typeof t==="string"?t.replace(u," ").replace(h,""):""},string:function(t){return g(t)?t:typeof t==="string"?t.replace(u," "):t}});var qe=function(t,e,n,i){if(t!==0&&(!t||t==="-")){return-Infinity}if(e){t=v(t,e)}if(t.replace){if(n){t=t.replace(n,"")}if(i){t=t.replace(i,"")}}return t*1};function Be(t){i.each({num:function(e){return qe(e,t)},"num-fmt":function(e){return qe(e,t,m)},"html-num":function(e){return qe(e,t,h)},"html-num-fmt":function(e){return qe(e,t,h,m)}},function(e,n){s.type.order[e+t+"-pre"]=n;
539if(e.match(/^html\-/)){s.type.search[e+t]=s.type.search.html}})}i.extend(s.type.order,{"date-pre":function(t){return Date.parse(t)||0},"html-pre":function(t){return g(t)?"":t.replace?t.replace(/<.*?>/g,"").toLowerCase():t+""},"string-pre":function(t){return g(t)?"":typeof t==="string"?t.toLowerCase():!t.toString?"":t.toString()},"string-asc":function(t,e){return t<e?-1:t>e?1:0},"string-desc":function(t,e){return t<e?1:t>e?-1:0}});Be("");i.extend(true,r.ext.renderer,{header:{_:function(t,e,n,r){i(t.nTable).on("order.dt.DT",function(i,s,o,a){if(t!==s){return}var l=n.idx;e.removeClass(n.sSortingClass+" "+r.sSortAsc+" "+r.sSortDesc).addClass(a[l]=="asc"?r.sSortAsc:a[l]=="desc"?r.sSortDesc:n.sSortingClass)})},jqueryui:function(t,e,n,r){i("<div/>").addClass(r.sSortJUIWrapper).append(e.contents()).append(i("<span/>").addClass(r.sSortIcon+" "+n.sSortingClassJUI)).appendTo(e);i(t.nTable).on("order.dt.DT",function(i,s,o,a){if(t!==s){return}var l=n.idx;e.removeClass(r.sSortAsc+" "+r.sSortDesc).addClass(a[l]=="asc"?r.sSortAsc:a[l]=="desc"?r.sSortDesc:n.sSortingClass);e.find("span."+r.sSortIcon).removeClass(r.sSortJUIAsc+" "+r.sSortJUIDesc+" "+r.sSortJUI+" "+r.sSortJUIAscAllowed+" "+r.sSortJUIDescAllowed).addClass(a[l]=="asc"?r.sSortJUIAsc:a[l]=="desc"?r.sSortJUIDesc:n.sSortingClassJUI)})}}});r.render={number:function(t,e,n,i,r){return{display:function(s){if(typeof s!=="number"&&typeof s!=="string"){return s}var o=s<0?"-":"";s=Math.abs(parseFloat(s));var a=parseInt(s,10);var l=n?e+(s-a).toFixed(n).substring(2):"";return o+(i||"")+a.toString().replace(/\B(?=(\d{3})+(?!\d))/g,t)+l+(r||"")}}}};function Ue(t){return function(){var e=[ce(this[r.ext.iApiIndex])].concat(Array.prototype.slice.call(arguments));return r.ext.internal[t].apply(this,e)}}i.extend(r.ext.internal,{_fnExternApiFunc:Ue,_fnBuildAjax:gt,_fnAjaxUpdate:_t,_fnAjaxParameters:vt,_fnAjaxUpdateDraw:yt,_fnAjaxDataSrc:bt,_fnAddColumn:$,_fnColumnOptions:R,_fnAdjustColumnSizing:L,_fnVisibleToColumnIndex:F,_fnColumnIndexToVisible:O,_fnVisbleColumns:H,_fnGetColumns:V,_fnColumnTypes:q,_fnApplyColumnDefs:B,_fnHungarianMap:A,_fnCamelToHungarian:D,_fnLanguageCompat:E,_fnBrowserDetect:j,_fnAddData:U,_fnAddTr:W,_fnNodeToDataIndex:Y,_fnNodeToColumnIndex:X,_fnGetCellData:J,_fnSetCellData:G,_fnSplitObjNotation:Q,_fnGetObjectDataFn:tt,_fnSetObjectDataFn:et,_fnGetDataMaster:nt,_fnClearTable:it,_fnDeleteIndex:rt,_fnInvalidate:st,_fnGetRowElements:ot,_fnCreateTr:at,_fnBuildHead:ct,_fnDrawHead:ut,_fnDraw:ht,_fnReDraw:ft,_fnAddOptionsHtml:dt,_fnDetectHeader:pt,_fnGetUniqueThs:mt,_fnFeatureHtmlFilter:xt,_fnFilterComplete:wt,_fnFilterCustom:kt,_fnFilterColumn:St,_fnFilter:Mt,_fnFilterCreateSearch:Tt,_fnEscapeRegex:Ct,_fnFilterData:Et,_fnFeatureHtmlInfo:Pt,_fnUpdateInfo:jt,_fnInfoMacros:It,_fnInitialise:$t,_fnInitComplete:Rt,_fnLengthChange:Lt,_fnFeatureHtmlLength:Ft,_fnFeatureHtmlPaginate:Ot,_fnPageChange:Ht,_fnFeatureHtmlProcessing:Vt,_fnProcessingDisplay:qt,_fnFeatureHtmlTable:Bt,_fnScrollDraw:Ut,_fnApplyToChildren:Wt,_fnCalculateColumnWidths:Xt,_fnThrottle:Jt,_fnConvertToWidth:Gt,_fnGetWidestNode:Kt,_fnGetMaxLenString:Zt,_fnStringToCss:Qt,_fnSortFlatten:te,_fnSort:ee,_fnSortAria:ne,_fnSortListener:ie,_fnSortAttachListener:re,_fnSortingClasses:se,_fnSortData:oe,_fnSaveState:ae,_fnLoadState:le,_fnSettingsFromNode:ce,_fnLog:ue,_fnMap:he,_fnBindAction:de,_fnCallbackReg:pe,_fnCallbackFire:me,_fnLengthOverflow:ge,_fnRenderer:_e,_fnDataSource:ve,_fnRowAttributes:lt,_fnCalculateEnd:function(){}});i.fn.dataTable=r;i.fn.dataTableSettings=r.settings;i.fn.dataTableExt=r.ext;i.fn.DataTable=function(t){return i(this).dataTable(t).api()};i.each(r,function(t,e){i.fn.DataTable[t]=e});return i.fn.dataTable})})(window,document); 540/*! 541 * @preserve 542 * 543 * Readmore.js jQuery plugin 544 * Author: @jed_foster 545 * Project home: http://jedfoster.github.io/Readmore.js 546 * Licensed under the MIT license 547 * 548 * Debounce function from http://davidwalsh.name/javascript-debounce-function 549 */ 550/*! 551 * @preserve 552 * 553 * Readmore.js jQuery plugin 554 * Author: @jed_foster 555 * Project home: http://jedfoster.github.io/Readmore.js 556 * Licensed under the MIT license 557 * 558 * Debounce function from http://davidwalsh.name/javascript-debounce-function 559 */ 560(function(t){"use strict";var e="readmore",n={speed:100,collapsedHeight:200,heightMargin:16,moreLink:'<a href="#">Read More</a>',lessLink:'<a href="#">Close</a>',embedCSS:true,blockCSS:"display: block; width: 100%;",startOpen:false,beforeToggle:function(){},afterToggle:function(){}},i={},r=0;function s(t,e,n){var i;return function(){var r=this,s=arguments;var o=function(){i=null;if(!n){t.apply(r,s)}};var a=n&&!i;clearTimeout(i);i=setTimeout(o,e);if(a){t.apply(r,s)}}}function o(t){var e=++r;return String(t==null?"rmjs-":t)+e}function a(t){var e=t.clone().css({height:"auto",width:t.width(),maxHeight:"none",overflow:"hidden"}).insertAfter(t),n=e.outerHeight(),i=parseInt(e.css({maxHeight:""}).css("max-height").replace(/[^-\d\.]/g,""),10),r=t.data("defaultHeight");e.remove();var s=i||t.data("collapsedHeight")||r;t.data({expandedHeight:n,maxHeight:i,collapsedHeight:s}).css({maxHeight:"none"})}var l=s(function(){t("[data-readmore]").each(function(){var e=t(this),n=e.attr("aria-expanded")==="true";a(e);e.css({height:e.data(n?"expandedHeight":"collapsedHeight")})})},100);function c(t){if(!i[t.selector]){var e=" ";if(t.embedCSS&&t.blockCSS!==""){e+=t.selector+" + [data-readmore-toggle], "+t.selector+"[data-readmore]{"+t.blockCSS+"}"}e+=t.selector+"[data-readmore]{"+"transition: height "+t.speed+"ms;"+"overflow: hidden;"+"}";(function(t,e){var n=t.createElement("style");n.type="text/css";if(n.styleSheet){n.styleSheet.cssText=e}else{n.appendChild(t.createTextNode(e))}t.getElementsByTagName("head")[0].appendChild(n)})(document,e);i[t.selector]=true}}function u(i,r){var s=this;this.element=i;this.options=t.extend({},n,r);c(this.options);this._defaults=n;this._name=e;this.init();if(window.addEventListener){window.addEventListener("load",l);window.addEventListener("resize",l)}else{window.attachEvent("load",l);window.attachEvent("resize",l)}}u.prototype={init:function(){var e=this,n=t(this.element);n.data({defaultHeight:this.options.collapsedHeight,heightMargin:this.options.heightMargin});a(n);
560var i=n.data("collapsedHeight"),r=n.data("heightMargin");if(n.outerHeight(true)<=i+r){return true}else{var s=n.attr("id")||o(),l=e.options.startOpen?e.options.lessLink:e.options.moreLink;n.attr({"data-readmore":"","aria-expanded":false,id:s});n.after(t(l).on("click",function(t){e.toggle(this,n[0],t)}).attr({"data-readmore-toggle":"","aria-controls":s}));if(!e.options.startOpen){n.css({height:i})}}},toggle:function(e,n,i){if(i){i.preventDefault()}if(!e){e=t('[aria-controls="'+this.element.id+'"]')[0]}if(!n){n=this.element}var r=this,s=t(n),o="",a="",l=false,c=s.data("collapsedHeight");if(s.height()<=c){o=s.data("expandedHeight")+"px";a="lessLink";l=true}else{o=c;a="moreLink"}r.options.beforeToggle(e,n,!l);s.css({height:o});s.on("transitionend",function(){r.options.afterToggle(e,n,l);t(this).attr({"aria-expanded":l}).off("transitionend")});t(e).replaceWith(t(r.options[a]).on("click",function(t){r.toggle(this,n,t)}).attr({"data-readmore-toggle":"","aria-controls":s.attr("id")}))},destroy:function(){t(this.element).each(function(){var e=t(this);e.attr({"data-readmore":null,"aria-expanded":null}).css({maxHeight:"",height:""}).next("[data-readmore-toggle]").remove();e.removeData()})}};t.fn.readmore=function(n){var i=arguments,r=this.selector;n=n||{};if(typeof n==="object"){return this.each(function(){if(t.data(this,"plugin_"+e)){var i=t.data(this,"plugin_"+e);i.destroy.apply(i)}n.selector=r;t.data(this,"plugin_"+e,new u(this,n))})}else if(typeof n==="string"&&n[0]!=="_"&&n!=="init"){return this.each(function(){var r=t.data(this,"plugin_"+e);if(r instanceof u&&typeof r[n]==="function"){r[n].apply(r,Array.prototype.slice.call(i,1))}})}}})(jQuery); 561/* 562jQuery.Turbolinks ~ https://github.com/kossnocorp/jquery.turbolinks 563jQuery plugin for drop-in fix binded events problem caused by Turbolinks 564 565The MIT License 566Copyright (c) 2012-2013 Sasha Koss & Rico Sta. Cruz 567 */ 568/* 569jQuery.Turbolinks ~ https://github.com/kossnocorp/jquery.turbolinks 570jQuery plugin for drop-in fix binded events problem caused by Turbolinks 571 572The MIT License 573Copyright (c) 2012-2013 Sasha Koss & Rico Sta. Cruz 574 */ 575(function(){var t,e;t=window.jQuery||(typeof require==="function"?require("jquery"):void 0);e=t(document);t.turbo={version:"2.1.0",isReady:false,use:function(t,n){return e.off(".turbo").on(""+t+".turbo",this.onLoad).on(""+n+".turbo",this.onFetch)},addCallback:function(n){if(t.turbo.isReady){n(t)}return e.on("turbo:ready",function(){return n(t)})},onLoad:function(){t.turbo.isReady=true;return e.trigger("turbo:ready")},onFetch:function(){return t.turbo.isReady=false},register:function(){t(this.onLoad);return t.fn.ready=this.addCallback}};t.turbo.register();t.turbo.use("page:load","page:fetch")}).call(this); 576/* ======================================================================== 577 * Bootstrap: transition.js v3.3.7 578 * http://getbootstrap.com/javascript/#transitions 579 * ======================================================================== 580 * Copyright 2011-2016 Twitter, Inc. 581 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 582 * ======================================================================== */+function(t){"use strict";function e(){var t=document.createElement("bootstrap");var e={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd otransitionend",transition:"transitionend"};for(var n in e){if(t.style[n]!==undefined){return{end:e[n]}}}return false}t.fn.emulateTransitionEnd=function(e){var n=false;var i=this;t(this).one("bsTransitionEnd",function(){n=true});var r=function(){if(!n)t(i).trigger(t.support.transition.end)};setTimeout(r,e);return this};t(function(){t.support.transition=e();if(!t.support.transition)return;t.event.special.bsTransitionEnd={bindType:t.support.transition.end,delegateType:t.support.transition.end,handle:function(e){if(t(e.target).is(this))return e.handleObj.handler.apply(this,arguments)}}})}(jQuery); 583/* ======================================================================== 584 * Bootstrap: alert.js v3.3.7 585 * http://getbootstrap.com/javascript/#alerts 586 * ======================================================================== 587 * Copyright 2011-2016 Twitter, Inc. 588 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 589 * ======================================================================== */+function(t){"use strict";var e='[data-dismiss="alert"]';var n=function(n){t(n).on("click",e,this.close)};n.VERSION="3.3.7";n.TRANSITION_DURATION=150;n.prototype.close=function(e){var i=t(this);var r=i.attr("data-target");if(!r){r=i.attr("href");r=r&&r.replace(/.*(?=#[^\s]*$)/,"")}var s=t(r==="#"?[]:r);if(e)e.preventDefault();if(!s.length){s=i.closest(".alert")}s.trigger(e=t.Event("close.bs.alert"));if(e.isDefaultPrevented())return;s.removeClass("in");function o(){s.detach().trigger("closed.bs.alert").remove()}t.support.transition&&s.hasClass("fade")?s.one("bsTransitionEnd",o).emulateTransitionEnd(n.TRANSITION_DURATION):o()};function i(e){return this.each(function(){var i=t(this);var r=i.data("bs.alert");if(!r)i.data("bs.alert",r=new n(this));if(typeof e=="string")r[e].call(i)})}var r=t.fn.alert;t.fn.alert=i;t.fn.alert.Constructor=n;t.fn.alert.noConflict=function(){t.fn.alert=r;return this};t(document).on("click.bs.alert.data-api",e,n.prototype.close)}(jQuery); 590/* ======================================================================== 591 * Bootstrap: button.js v3.3.7 592 * http://getbootstrap.com/javascript/#buttons 593 * ======================================================================== 594 * Copyright 2011-2016 Twitter, Inc. 595 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 596 * ======================================================================== */+function(t){"use strict";var e=function(n,i){this.$element=t(n);this.options=t.extend({},e.DEFAULTS,i);this.isLoading=false};e.VERSION="3.3.7";e.DEFAULTS={loadingText:"loading..."};e.prototype.setState=function(e){var n="disabled";var i=this.$element;var r=i.is("input")?"val":"html";var s=i.data();e+="Text";if(s.resetText==null)i.data("resetText",i[r]());setTimeout(t.proxy(function(){i[r](s[e]==null?this.options[e]:s[e]);if(e=="loadingText"){this.isLoading=true;i.addClass(n).attr(n,n).prop(n,true)}else if(this.isLoading){this.isLoading=false;i.removeClass(n).removeAttr(n).prop(n,false)}},this),0)};e.prototype.toggle=function(){var t=true;var e=this.$element.closest('[data-toggle="buttons"]');if(e.length){var n=this.$element.find("input");if(n.prop("type")=="radio"){if(n.prop("checked"))t=false;e.find(".active").removeClass("active");this.$element.addClass("active")}else if(n.prop("type")=="checkbox"){if(n.prop("checked")!==this.$element.hasClass("active"))t=false;this.$element.toggleClass("active")}n.prop("checked",this.$element.hasClass("active"));if(t)n.trigger("change")}else{this.$element.attr("aria-pressed",!this.$element.hasClass("active"));this.$element.toggleClass("active")}};function n(n){return this.each(function(){var i=t(this);var r=i.data("bs.button");var s=typeof n=="object"&&n;if(!r)i.data("bs.button",r=new e(this,s));
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596if(n=="toggle")r.toggle();else if(n)r.setState(n)})}var i=t.fn.button;t.fn.button=n;t.fn.button.Constructor=e;t.fn.button.noConflict=function(){t.fn.button=i;return this};t(document).on("click.bs.button.data-api",'[data-toggle^="button"]',function(e){var i=t(e.target).closest(".btn");n.call(i,"toggle");if(!t(e.target).is('input[type="radio"], input[type="checkbox"]')){e.preventDefault();if(i.is("input,button"))i.trigger("focus");else i.find("input:visible,button:visible").first().trigger("focus")}}).on("focus.bs.button.data-api blur.bs.button.data-api",'[data-toggle^="button"]',function(e){t(e.target).closest(".btn").toggleClass("focus",/^focus(in)?$/.test(e.type))})}(jQuery); 597/* ======================================================================== 598 * Bootstrap: carousel.js v3.3.7 599 * http://getbootstrap.com/javascript/#carousel 600 * ======================================================================== 601 * Copyright 2011-2016 Twitter, Inc. 602 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 603 * ======================================================================== */+function(t){"use strict";var e=function(e,n){this.$element=t(e);this.$indicators=this.$element.find(".carousel-indicators");this.options=n;this.paused=null;this.sliding=null;this.interval=null;this.$active=null;this.$items=null;this.options.keyboard&&this.$element.on("keydown.bs.carousel",t.proxy(this.keydown,this));this.options.pause=="hover"&&!("ontouchstart"in document.documentElement)&&this.$element.on("mouseenter.bs.carousel",t.proxy(this.pause,this)).on("mouseleave.bs.carousel",t.proxy(this.cycle,this))};e.VERSION="3.3.7";e.TRANSITION_DURATION=600;e.DEFAULTS={interval:5e3,pause:"hover",wrap:true,keyboard:true};e.prototype.keydown=function(t){if(/input|textarea/i.test(t.target.tagName))return;switch(t.which){case 37:this.prev();break;case 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i=t.fn.carousel;t.fn.carousel=n;t.fn.carousel.Constructor=e;t.fn.carousel.noConflict=function(){t.fn.carousel=i;return this};var r=function(e){var i;var r=t(this);var s=t(r.attr("data-target")||(i=r.attr("href"))&&i.replace(/.*(?=#[^\s]+$)/,""));if(!s.hasClass("carousel"))return;var o=t.extend({},s.data(),r.data());var a=r.attr("data-slide-to");if(a)o.interval=false;n.call(s,o);if(a){s.data("bs.carousel").to(a)}e.preventDefault()};t(document).on("click.bs.carousel.data-api","[data-slide]",r).on("click.bs.carousel.data-api","[data-slide-to]",r);t(window).on("load",function(){t('[data-ride="carousel"]').each(function(){var e=t(this);n.call(e,e.data())})})}(jQuery); 604/* ======================================================================== 605 * Bootstrap: collapse.js v3.3.7 606 * http://getbootstrap.com/javascript/#collapse 607 * ======================================================================== 608 * Copyright 2011-2016 Twitter, Inc. 609 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 610 * ======================================================================== */+function(t){"use strict";var e=function(n,i){this.$element=t(n);this.options=t.extend({},e.DEFAULTS,i);this.$trigger=t('[data-toggle="collapse"][href="#'+n.id+'"],'+'[data-toggle="collapse"][data-target="#'+n.id+'"]');this.transitioning=null;if(this.options.parent){this.$parent=this.getParent()}else{this.addAriaAndCollapsedClass(this.$element,this.$trigger)}if(this.options.toggle)this.toggle()};e.VERSION="3.3.7";e.TRANSITION_DURATION=350;e.DEFAULTS={toggle:true};e.prototype.dimension=function(){var t=this.$element.hasClass("width");return t?"width":"height"};e.prototype.show=function(){if(this.transitioning||this.$element.hasClass("in"))return;var n;var r=this.$parent&&this.$parent.children(".panel").children(".in, .collapsing");if(r&&r.length){n=r.data("bs.collapse");if(n&&n.transitioning)return}var 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i=this.dimension();this.$element[i](this.$element[i]())[0].offsetHeight;this.$element.addClass("collapsing").removeClass("collapse in").attr("aria-expanded",false);this.$trigger.addClass("collapsed").attr("aria-expanded",false);this.transitioning=1;var r=function(){this.transitioning=0;this.$element.removeClass("collapsing").addClass("collapse").trigger("hidden.bs.collapse")};if(!t.support.transition)return r.call(this);this.$element[i](0).one("bsTransitionEnd",t.proxy(r,this)).emulateTransitionEnd(e.TRANSITION_DURATION)};e.prototype.toggle=function(){this[this.$element.hasClass("in")?"hide":"show"]()};e.prototype.getParent=function(){return t(this.options.parent).find('[data-toggle="collapse"][data-parent="'+this.options.parent+'"]').each(t.proxy(function(e,i){var r=t(i);this.addAriaAndCollapsedClass(n(r),r)},this)).end()};e.prototype.addAriaAndCollapsedClass=function(t,e){var n=t.hasClass("in");t.attr("aria-expanded",n);e.toggleClass("collapsed",!n).attr("aria-expanded",n)};function n(e){var n;var i=e.attr("data-target")||(n=e.attr("href"))&&n.replace(/.*(?=#[^\s]+$)/,"");return t(i)}function i(n){return this.each(function(){var i=t(this);var r=i.data("bs.collapse");var s=t.extend({},e.DEFAULTS,i.data(),typeof n=="object"&&n);if(!r&&s.toggle&&/show|hide/.test(n))s.toggle=false;if(!r)i.data("bs.collapse",r=new e(this,s));if(typeof n=="string")r[n]()})}var r=t.fn.collapse;t.fn.collapse=i;t.fn.collapse.Constructor=e;t.fn.collapse.noConflict=function(){t.fn.collapse=r;return this};t(document).on("click.bs.collapse.data-api",'[data-toggle="collapse"]',function(e){var r=t(this);if(!r.attr("data-target"))e.preventDefault();var s=n(r);var o=s.data("bs.collapse");var a=o?"toggle":r.data();i.call(s,a)})}(jQuery); 611/* ======================================================================== 612 * Bootstrap: dropdown.js v3.3.7 613 * http://getbootstrap.com/javascript/#dropdowns 614 * ======================================================================== 615 * Copyright 2011-2016 Twitter, Inc. 616 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 617 * ======================================================================== */+function(t){"use strict";var e=".dropdown-backdrop";var n='[data-toggle="dropdown"]';var i=function(e){t(e).on("click.bs.dropdown",this.toggle)};i.VERSION="3.3.7";function r(e){var n=e.attr("data-target");if(!n){n=e.attr("href");n=n&&/#[A-Za-z]/.test(n)&&n.replace(/.*(?=#[^\s]*$)/,"")}var i=n&&t(n);return i&&i.length?i:e.parent()}function s(i){if(i&&i.which===3)return;t(e).remove();t(n).each(function(){var e=t(this);var n=r(e);var s={relatedTarget:this};if(!n.hasClass("open"))return;if(i&&i.type=="click"&&/input|textarea/i.test(i.target.tagName)&&t.contains(n[0],i.target))return;n.trigger(i=t.Event("hide.bs.dropdown",s));if(i.isDefaultPrevented())return;e.attr("aria-expanded","false");n.removeClass("open").trigger(t.Event("hidden.bs.dropdown",s))})}i.prototype.toggle=function(e){var n=t(this);if(n.is(".disabled, :disabled"))return;var i=r(n);var o=i.hasClass("open");s();if(!o){if("ontouchstart"in document.documentElement&&!i.closest(".navbar-nav").length){t(document.createElement("div")).addClass("dropdown-backdrop").insertAfter(t(this)).on("click",s)}var a={relatedTarget:this};i.trigger(e=t.Event("show.bs.dropdown",a));if(e.isDefaultPrevented())return;n.trigger("focus").attr("aria-expanded","true");i.toggleClass("open").trigger(t.Event("shown.bs.dropdown",a))}return false};i.prototype.keydown=function(e){if(!/(38|40|27|32)/.test(e.which)||/input|textarea/i.test(e.target.tagName))return;var i=t(this);e.preventDefault();e.stopPropagation();if(i.is(".disabled, :disabled"))return;var s=r(i);var o=s.hasClass("open");if(!o&&e.which!=27||o&&e.which==27){if(e.which==27)s.find(n).trigger("focus");return i.trigger("click")}var a=" li:not(.disabled):visible a";var l=s.find(".dropdown-menu"+a);if(!l.length)return;var 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Twitter, Inc. 623 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 624 * ======================================================================== */+function(t){"use strict";var e=function(e,n){this.options=n;this.$body=t(document.body);this.$element=t(e);this.$dialog=this.$element.find(".modal-dialog");this.$backdrop=null;this.isShown=null;this.originalBodyPad=null;this.scrollbarWidth=0;this.ignoreBackdropClick=false;if(this.options.remote){this.$element.find(".modal-content").load(this.options.remote,t.proxy(function(){this.$element.trigger("loaded.bs.modal")},this))}};e.VERSION="3.3.7";e.TRANSITION_DURATION=300;e.BACKDROP_TRANSITION_DURATION=150;e.DEFAULTS={backdrop:true,keyboard:true,show:true};e.prototype.toggle=function(t){return this.isShown?this.hide():this.show(t)};e.prototype.show=function(n){var i=this;var r=t.Event("show.bs.modal",{relatedTarget:n});this.$element.trigger(r);if(this.isShown||r.isDefaultPrevented())return;this.isShown=true;this.checkScrollbar();this.setScrollbar();this.$body.addClass("modal-open");this.escape();this.resize();this.$element.on("click.dismiss.bs.modal",'[data-dismiss="modal"]',t.proxy(this.hide,this));this.$dialog.on("mousedown.dismiss.bs.modal",function(){i.$element.one("mouseup.dismiss.bs.modal",function(e){if(t(e.target).is(i.$element))i.ignoreBackdropClick=true})});this.backdrop(function(){var r=t.support.transition&&i.$element.hasClass("fade");if(!i.$element.parent().length){i.$element.appendTo(i.$body)}i.$element.show().scrollTop(0);i.adjustDialog();if(r){i.$element[0].offsetWidth}i.$element.addClass("in");i.enforceFocus();var s=t.Event("shown.bs.modal",{relatedTarget:n});r?i.$dialog.one("bsTransitionEnd",function(){i.$element.trigger("focus").trigger(s)}).emulateTransitionEnd(e.TRANSITION_DURATION):i.$element.trigger("focus").trigger(s)})};e.prototype.hide=function(n){if(n)n.preventDefault();n=t.Event("hide.bs.modal");this.$element.trigger(n);if(!this.isShown||n.isDefaultPrevented())return;this.isShown=false;this.escape();this.resize();t(document).off("focusin.bs.modal");this.$element.removeClass("in").off("click.dismiss.bs.modal").off("mouseup.dismiss.bs.modal");this.$dialog.off("mousedown.dismiss.bs.modal");t.support.transition&&this.$element.hasClass("fade")?this.$element.one("bsTransitionEnd",t.proxy(this.hideModal,this)).emulateTransitionEnd(e.TRANSITION_DURATION):this.hideModal()};e.prototype.enforceFocus=function(){t(document).off("focusin.bs.modal").on("focusin.bs.modal",t.proxy(function(t){if(document!==t.target&&this.$element[0]!==t.target&&!this.$element.has(t.target).length){this.$element.trigger("focus")}},this))};e.prototype.escape=function(){if(this.isShown&&this.options.keyboard){this.$element.on("keydown.dismiss.bs.modal",t.proxy(function(t){t.which==27&&this.hide()},this))}else 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t=this.$element[0].scrollHeight>document.documentElement.clientHeight;this.$element.css({paddingLeft:!this.bodyIsOverflowing&&t?this.scrollbarWidth:"",paddingRight:this.bodyIsOverflowing&&!t?this.scrollbarWidth:""})};e.prototype.resetAdjustments=function(){this.$element.css({paddingLeft:"",paddingRight:""})};e.prototype.checkScrollbar=function(){var t=window.innerWidth;if(!t){var e=document.documentElement.getBoundingClientRect();t=e.right-Math.abs(e.left)}this.bodyIsOverflowing=document.body.clientWidth<t;this.scrollbarWidth=this.measureScrollbar()};e.prototype.setScrollbar=function(){var t=parseInt(this.$body.css("padding-right")||0,10);this.originalBodyPad=document.body.style.paddingRight||"";if(this.bodyIsOverflowing)this.$body.css("padding-right",t+this.scrollbarWidth)};e.prototype.resetScrollbar=function(){this.$body.css("padding-right",this.originalBodyPad)};e.prototype.measureScrollbar=function(){var t=document.createElement("div");t.className="modal-scrollbar-measure";this.$body.append(t);var e=t.offsetWidth-t.clientWidth;this.$body[0].removeChild(t);return e};function n(n,i){return this.each(function(){var r=t(this);var s=r.data("bs.modal");var o=t.extend({},e.DEFAULTS,r.data(),typeof n=="object"&&n);if(!s)r.data("bs.modal",s=new e(this,o));if(typeof n=="string")s[n](i);else if(o.show)s.show(i)})}var i=t.fn.modal;t.fn.modal=n;t.fn.modal.Constructor=e;t.fn.modal.noConflict=function(){t.fn.modal=i;return this};t(document).on("click.bs.modal.data-api",'[data-toggle="modal"]',function(e){var i=t(this);var r=i.attr("href");var s=t(i.attr("data-target")||r&&r.replace(/.*(?=#[^\s]+$)/,""));var o=s.data("bs.modal")?"toggle":t.extend({remote:!/#/.test(r)&&r},s.data(),i.data());if(i.is("a"))e.preventDefault();s.one("show.bs.modal",function(t){if(t.isDefaultPrevented())return;s.one("hidden.bs.modal",function(){i.is(":visible")&&i.trigger("focus")})});n.call(s,o,this)})}(jQuery); 625/* 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a=t(i);this.activate(e.closest("li"),n);this.activate(a,a.parent(),function(){r.trigger({type:"hidden.bs.tab",relatedTarget:e[0]});e.trigger({type:"shown.bs.tab",relatedTarget:r[0]})})};e.prototype.activate=function(n,i,r){var s=i.find("> .active");var o=r&&t.support.transition&&(s.length&&s.hasClass("fade")||!!i.find("> .fade").length);function a(){s.removeClass("active").find("> .dropdown-menu > .active").removeClass("active").end().find('[data-toggle="tab"]').attr("aria-expanded",false);n.addClass("active").find('[data-toggle="tab"]').attr("aria-expanded",true);if(o){n[0].offsetWidth;n.addClass("in")}else{n.removeClass("fade")}if(n.parent(".dropdown-menu").length){n.closest("li.dropdown").addClass("active").end().find('[data-toggle="tab"]').attr("aria-expanded",true)}r&&r()}s.length&&o?s.one("bsTransitionEnd",a).emulateTransitionEnd(e.TRANSITION_DURATION):a();s.removeClass("in")};function n(n){return this.each(function(){var i=t(this);var r=i.data("bs.tab");if(!r)i.data("bs.tab",r=new e(this));if(typeof n=="string")r[n]()})}var i=t.fn.tab;t.fn.tab=n;t.fn.tab.Constructor=e;t.fn.tab.noConflict=function(){t.fn.tab=i;return this};var r=function(e){e.preventDefault();n.call(t(this),"show")};t(document).on("click.bs.tab.data-api",'[data-toggle="tab"]',r).on("click.bs.tab.data-api",'[data-toggle="pill"]',r)}(jQuery); 632/* ======================================================================== 633 * Bootstrap: affix.js v3.3.7 634 * http://getbootstrap.com/javascript/#affix 635 * ======================================================================== 636 * Copyright 2011-2016 Twitter, Inc. 637 * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE) 638 * ======================================================================== */+function(t){"use strict";var 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vendor: 4,697 bytes, line 714
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714,0,1,1,${t-n},${e}A${n},${n},0,1,1,${this._x1=i},${this._y1=r}`)}rect(t,e,n,i){this._+=`M${this._x0=this._x1=+t},${this._y0=this._y1=+e}h${+n}v${+i}h${-n}Z`}value(){return this._||null}}class ua{constructor(){this._=[]}moveTo(t,e){this._.push([t,e])}closePath(){this._.push(this._[0].slice())}lineTo(t,e){this._.push([t,e])}value(){return this._.length?this._:null}}class ha{constructor(t,[e,n,i,r]=[0,0,960,500]){if(!((i=+i)>=(e=+e)&&(r=+r)>=(n=+n)))throw new Error("invalid bounds");this.delaunay=t,this._circumcenters=new Float64Array(2*t.points.length),this.vectors=new Float64Array(2*t.points.length),this.xmax=i,this.xmin=e,this.ymax=r,this.ymin=n,this._init()}update(){return this.delaunay.update(),this._init(),this}_init(){const{delaunay:{points:t,hull:e,triangles:n},vectors:i}=this,r=this.circumcenters=this._circumcenters.subarray(0,n.length/3*2);for(let e,i,s=0,o=0,a=n.length;s<a;s+=3,o+=2){const a=2*n[s],l=2*n[s+1],c=2*n[s+2],u=t[a],h=t[a+1],f=t[l],d=t[l+1],p=t[c],m=t[c+1],g=f-u,_=d-h,v=p-u,y=m-h,b=2*(g*y-_*v);if(Math.abs(b)<1e-9){let r=1e9;const s=2*n[0];r*=Math.sign((t[s]-u)*y-(t[s+1]-h)*v),e=(u+p)/2-r*y,i=(h+m)/2+r*v}else{const t=1/b,n=g*g+_*_,r=v*v+y*y;e=u+(y*n-_*r)*t,i=h+(g*r-v*n)*t}r[o]=e,r[o+1]=i}let s,o,a,l=e[e.length-1],c=4*l,u=t[2*l],h=t[2*l+1];i.fill(0);for(let n=0;n<e.length;++n)l=e[n],s=c,o=u,a=h,c=4*l,u=t[2*l],h=t[2*l+1],i[s+2]=i[c]=a-h,i[s+3]=i[c+1]=u-o}render(t){const e=null==t?t=new ca:void 0,{delaunay:{halfedges:n,inedges:i,hull:r},circumcenters:s,vectors:o}=this;if(r.length<=1)return null;for(let e=0,i=n.length;e<i;++e){const i=n[e];if(i<e)continue;const r=2*Math.floor(e/3),o=2*Math.floor(i/3),a=s[r],l=s[r+1],c=s[o],u=s[o+1];this._renderSegment(a,l,c,u,t)}let a,l=r[r.length-1];for(let e=0;e<r.length;++e){a=l,l=r[e];const n=2*Math.floor(i[l]/3),c=s[n],u=s[n+1],h=4*a,f=this._project(c,u,o[h+2],o[h+3]);f&&this._renderSegment(c,u,f[0],f[1],t)}return e&&e.value()}renderBounds(t){const e=null==t?t=new ca:void 0;return t.rect(this.xmin,this.ymin,this.xmax-this.xmin,this.ymax-this.ymin),e&&e.value()}renderCell(t,e){const n=null==e?e=new ca:void 0,i=this._clip(t);if(null===i||!i.length)return;e.moveTo(i[0],i[1]);let r=i.length;for(;i[0]===i[r-2]&&i[1]===i[r-1]&&r>1;)r-=2;for(let t=2;t<r;t+=2)i[t]===i[t-2]&&i[t+1]===i[t-1]||e.lineTo(i[t],i[t+1]);return e.closePath(),n&&n.value()}*cellPolygons(){const{delaunay:{points:t}}=this;for(let e=0,n=t.length/2;e<n;++e){const t=this.cellPolygon(e);t&&(t.index=e,yield t)}}cellPolygon(t){const e=new ua;return this.renderCell(t,e),e.value()}_renderSegment(t,e,n,i,r){let s;const o=this._regioncode(t,e),a=this._regioncode(n,i);0===o&&0===a?(r.moveTo(t,e),r.lineTo(n,i)):(s=this._clipSegment(t,e,n,i,o,a))&&(r.moveTo(s[0],s[1]),r.lineTo(s[2],s[3]))}contains(t,e,n){return(e=+e)==e&&(n=+n)==n&&this.delaunay._step(t,e,n)===t}*neighbors(t){const e=this._clip(t);if(e)for(const n of this.delaunay.neighbors(t)){const t=this._clip(n);if(t)t:for(let i=0,r=e.length;i<r;i+=2)for(let s=0,o=t.length;s<o;s+=2)if(e[i]==t[s]&&e[i+1]==t[s+1]&&e[(i+2)%r]==t[(s+o-2)%o]&&e[(i+3)%r]==t[(s+o-1)%o]){yield n;break t}}}_cell(t){const{circumcenters:e,delaunay:{inedges:n,halfedges:i,triangles:r}}=this,s=n[t];if(-1===s)return null;const o=[];let a=s;do{const n=Math.floor(a/3);if(o.push(e[2*n],e[2*n+1]),a=a%3==2?a-2:a+1,r[a]!==t)break;a=i[a]}while(a!==s&&-1!==a);return o}_clip(t){if(0===t&&1===this.delaunay.hull.length)return[this.xmax,this.ymin,this.xmax,this.ymax,this.xmin,this.ymax,this.xmin,this.ymin];const e=this._cell(t);if(null===e)return null;const{vectors:n}=this,i=4*t;return n[i]||n[i+1]?this._clipInfinite(t,e,n[i],n[i+1],n[i+2],n[i+3]):this._clipFinite(t,e)}_clipFinite(t,e){const n=e.length;let i,r,s,o,a=null,l=e[n-2],c=e[n-1],u=this._regioncode(l,c),h=0;for(let f=0;f<n;f+=2)if(i=l,r=c,l=e[f],c=e[f+1],s=u,u=this._regioncode(l,c),0===s&&0===u)o=h,h=0,a?a.push(l,c):a=[l,c];else{let e,n,f,d,p;if(0===s){if(null===(e=this._clipSegment(i,r,l,c,s,u)))continue;[n,f,d,p]=e}else{if(null===(e=this._clipSegment(l,c,i,r,u,s)))continue;[d,p,n,f]=e,o=h,h=this._edgecode(n,f),o&&h&&this._edge(t,o,h,a,a.length),a?a.push(n,f):a=[n,f]}o=h,h=this._edgecode(d,p),o&&h&&this._edge(t,o,h,a,a.length),a?a.push(d,p):a=[d,p]}if(a)o=h,h=this._edgecode(a[0],a[1]),o&&h&&this._edge(t,o,h,a,a.length);else if(this.contains(t,(this.xmin+this.xmax)/2,(this.ymin+this.ymax)/2))return[this.xmax,this.ymin,this.xmax,this.ymax,this.xmin,this.ymax,this.xmin,this.ymin];return a}_clipSegment(t,e,n,i,r,s){for(;;){if(0===r&&0===s)return[t,e,n,i];if(r&s)return null;let o,a,l=r||s;8&l?(o=t+(n-t)*(this.ymax-e)/(i-e),a=this.ymax):4&l?(o=t+(n-t)*(this.ymin-e)/(i-e),a=this.ymin):2&l?(a=e+(i-e)*(this.xmax-t)/(n-t),o=this.xmax):(a=e+(i-e)*(this.xmin-t)/(n-t),o=this.xmin),r?(t=o,e=a,r=this._regioncode(t,e)):(n=o,i=a,s=this._regioncode(n,i))}}_clipInfinite(t,e,n,i,r,s){let o,a=Array.from(e);if((o=this._project(a[0],a[1],n,i))&&a.unshift(o[0],o[1]),(o=this._project(a[a.length-2],a[a.length-1],r,s
vendor: 4,158 bytes, line 714
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n,i,r,s,o;n=this;s=this.x_getter;o=this.y_getter;r=this.sort_peaks;i=this.normalize_intensity;return d3.json(this.peaks_data_url(),function(t){var i;t.forEach(function(t,e){t.x=+s(t);t.y=+o(t);t.selected=false;return t.assignment=t.assignments.length>0?t.assignments[0]:null});i=r(t);
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725se);n=d3.select(this.spectrum_peaks[this.selected_peak]);n.attr("class","peak selected");return this.draw_peak_assignments(n.datum())};e.prototype.draw_pressed_button=function(){return d3.select(this).classed("pressed",true)};e.prototype.draw_released_button=function(){return d3.select(this).classed("pressed",false)};e.prototype.draw_chart=function(t){var e,n;e={max:d3.max(this.peaks,function(t){return t.x}),min:d3.min(this.peaks,function(t){return t.x})};e.scale=d3.scale.linear().range([0,this.width]).domain([e.min,e.max]).nice();n={max:d3.max(this.peaks,function(t){return t.y}),min:0};n.scale=d3.scale.linear().range([0,this.height-40]).domain([n.min,n.max]).nice();e.min=e.min<0?e.min:0;this.draw_y_axis(n);this.draw_x_axis(e);this.draw_peaks(this.peaks,e,n);this.draw_peak_x_labels(this.peaks,e,n);return this.select_peak(0)};e.prototype.draw_peaks=function(t,e,n){var i;this.spectrum_peaks_container=this.canvas.append("g");i=this;this.spectrum_peaks_container.selectAll(".peak").data(t).enter().append("line").attr("class","peak").attr("y1",n.min).attr("y2",function(t){return function(t){return n.scale(t.y)}}(this)).attr("x1",function(t){return function(t){return e.scale(t.x)}}(this)).attr("x2",function(t){return function(t){return e.scale(t.x)}}(this)).on("mouseover",function(t,e){return i.select_peak(e)});return this.spectrum_peaks=this.spectrum_peaks_container.selectAll(".peak")[0]};e.prototype.draw_peak_x_labels=function(t,e,n){var i,r,s;this.peak_x_labels=this.canvas.append("g");i=this;s=5;r=10;return this.peak_x_labels.selectAll("g.peak-x-label").data(t).enter().append("g").attr("class","peak-x-label").attr("transform",function(t){return function(i){return"translate("+(e.scale(i.x)+t.shift_intensity_x*r)+","+(n.scale(i.y)+t.shift_intensity_y*s)+")"}}(this)).append("text").text(function(t){return function(t){return t.x.toFixed(1)}}(this)).call(this.orient_intensity)};e.prototype.draw_x_axis=function(t){var e,n;e=d3.svg.axis().orient("bottom").scale(t.scale);this.x_rules=this.canvas.append("g").attr("class","axis").call(this.orient_x_rules).call(e);this.x_rules.selectAll("text").call(this.orient_x_rule_numbers);n=this.x_title_getter!=null?this.x_title_getter():this.x_title;return this.specsvg.append("text").attr("class","title").attr("x",this.width/2+this.margin.left).attr("dy",this.height+this.margin.top+this.margin.bottom/2+10).attr("text-anchor","middle").text(n)};e.prototype.draw_y_axis=function(t){var e;this.y_rules_container.attr("transform","translate("+this.margin.left+","+(this.height+this.margin.top)+") scale(1,-1)");this.y_rules=this.y_rules_container.selectAll(".rule").data(t.scale.ticks(10)).enter().append("g").attr("class","rule").attr("transform",function(e){return"translate(0,"+t.scale(e)+")"});this.y_rules.append("line").attr("x2",this.width);this.y_rules.append("text").attr("x",-6).attr("dy",".35em").attr("text-anchor","end").text(function(t){return t}).attr("transform","scale(1,-1)");e=this.y_title_getter!=null?this.y_title_getter():this.y_title;return this.specsvg.append("text").attr("class","title").attr("transform","rotate(-90)").attr("y",this.margin.left/2-10).attr("x",-this.height/2-this.margin.top).attr("text-anchor","middle").text(e)};return e}();this.MsMsChart=function(n){e(i,n);function i(){this.orient_x_rule_numbers=t(this.orient_x_rule_numbers,this);this.orient_x_rules=t(this.orient_x_rules,this);this.orient_canvas=t(this.orient_canvas,this);return i.__super__.constructor.apply(this,arguments)}i.prototype.x_title="Mass Charge (m/z)";i.prototype.y_title="Intensity";i.prototype.x_getter=function(t){return+t.mass_charge};i.prototype.y_getter=function(t){return+t.intensity};i.prototype.shift_intensity_x=-1;i.prototype.shift_intensity_y=1;i.prototype.orient_canvas=function(t){return t.attr("transform","translate("+this.margin.left+","+(this.height+this.margin.top)+") scale(1,-1)")};i.prototype.orient_x_rules=function(t){return t.attr("transform","scale(1,-1)")};i.prototype.orient_x_rule_numbers=function(t){};return i}(this.SpectrumChart);this.CMsChart=function(t){e(n,t);function n(){return n.__super__.constructor.apply(this,arguments)}n.prototype.y_getter=function(t){if(t.intensity===null){return 1}else{return+t.intensity}};return n}(this.MsMsChart);this.NmrOneDChart=function(n){e(i,n);function i(){this.orient_intensity=t(this.orient_intensity,this);return i.__super__.constructor.apply(this,arguments)}i.prototype.x_title="Chemical Shift";i.prototype.y_title="Intensity";i.prototype.x_getter=function(t){return+t.chemical_shift};i.prototype.y_getter=function(t){return+t.intensity};i.prototype.orient_intensity=function(t){return t.attr("transform","scale(-1,-1)")};i.prototype.draw_peak_assignments=function(t){};i.prototype.draw_peak_x_labels=function(t,e,n){};i.prototype.sort_peaks=function(t){return t.sort(function(t,e){return e.x-t.x}
725)};return i}(this.SpectrumChart);this.NmrTwoDChart=function(t){e(n,t);function n(){return n.__super__.constructor.apply(this,arguments)}n.prototype.x_title_getter=function(){return this.chart.attr("data-nucleus-x")+" Chemical Shift (ppm)"};n.prototype.y_title_getter=function(){return this.chart.attr("data-nucleus-y")+" Chemical Shift (ppm)"};n.prototype.x_getter=function(t){return+t.chemical_shift_x};n.prototype.y_getter=function(t){return+t.chemical_shift_y};n.prototype.sort_peaks=function(t){return t.sort(function(t,e){return e.x-t.x})};n.prototype.draw_peaks=function(t,e,n){var i;this.spectrum_peaks_container=this.canvas.append("g");i=this;this.spectrum_peaks_container.selectAll(".peak").data(t).enter().append("circle").attr("class","peak").attr("r",10).attr("cy",function(t){return function(t){return n.scale(t.y)}}(this)).attr("cx",function(t){return function(t){return e.scale(t.x)}}(this)).on("mouseover",function(t,e){return i.select_peak(e)});return this.spectrum_peaks=this.spectrum_peaks_container.selectAll(".peak")[0]};return n}(this.SpectrumChart);$(document).ready(function(){})}).call(this);var Rickshaw={namespace:function(t,e){var n=t.split(".");var i=Rickshaw;for(var r=1,s=n.length;r<s;r++){var o=n[r];i[o]=i[o]||{};i=i[o]}return i},keys:function(t){var e=[];for(var n in t)e.push(n);return e},extend:function(t,e){for(var n in e){t[n]=e[n]}return t},clone:function(t){return JSON.parse(JSON.stringify(t))}};if(typeof module!=="undefined"&&module.exports){var d3=require("d3");module.exports=Rickshaw}(function(t){var e=Object.prototype.toString,n="Null",i="Undefined",r="Boolean",s="Number",o="String",a="Object",l="[object Function]";function c(t){return e.call(t)===l}function u(t,e){for(var n in e)if(e.hasOwnProperty(n))t[n]=e[n];return t}function h(t){if(f(t)!==a){throw new TypeError}var e=[];for(var n in t){if(t.hasOwnProperty(n)){e.push(n)}}return e}function f(t){switch(t){case null:return n;case void 0:return i}var e=typeof t;switch(e){case"boolean":return r;case"number":return s;case"string":return o}return a}function d(t){return typeof t==="undefined"}var p=Array.prototype.slice;function m(t){var e=t.toString().match(/^[\s\(]*function[^(]*\(([^)]*)\)/)[1].replace(/\/\/.*?[\r\n]|\/\*(?:.|[\r\n])*?\*\//g,"").replace(/\s+/g,"").split(",");return e.length==1&&!e[0]?[]:e}function g(t,e){var n=t;return function(){var t=_([y(n,this)],arguments);return e.apply(this,t)}}function _(t,e){var n=t.length,i=e.length;while(i--)t[n+i]=e[i];return t}function v(t,e){t=p.call(t,0);return _(t,e)}function y(t,e){if(arguments.length<2&&d(arguments[0]))return this;var n=t,i=p.call(arguments,2);return function(){var t=v(i,arguments);return n.apply(e,t)}}var b=function(){};var x=function(){var t=function(){for(var t in{toString:1}){if(t==="toString")return false}return true}();function e(){}function n(){var t=null,n=[].slice.apply(arguments);if(c(n[0]))t=n.shift();function i(){this.initialize.apply(this,arguments)}u(i,x.Methods);i.superclass=t;i.subclasses=[];if(t){e.prototype=t.prototype;i.prototype=new e;try{t.subclasses.push(i)}catch(o){}}for(var r=0,s=n.length;r<s;r++)i.addMethods(n[r]);if(!i.prototype.initialize)i.prototype.initialize=b;i.prototype.constructor=i;return i}function i(e){var n=this.superclass&&this.superclass.prototype,i=h(e);if(t){if(e.toString!=Object.prototype.toString)i.push("toString");if(e.valueOf!=Object.prototype.valueOf)i.push("valueOf")}for(var r=0,s=i.length;r<s;r++){var o=i[r],a=e[o];if(n&&c(a)&&m(a)[0]=="$super"){var l=a;a=g(function(t){return function(){return n[t].apply(this,arguments)}}(o),l);a.valueOf=y(l.valueOf,l);a.toString=y(l.toString,l)}this.prototype[o]=a}return this}return{create:n,Methods:{addMethods:i}}}();if(t.exports){t.exports.Class=x}else{t.Class=x}})(Rickshaw);Rickshaw.namespace("Rickshaw.Compat.ClassList");Rickshaw.Compat.ClassList=function(){if(typeof document!=="undefined"&&!("classList"in document.createElement("a"))){(function(t){"use strict";var e="classList",n="prototype",i=(t.HTMLElement||t.Element)[n],r=Object,s=String[n].trim||function(){return this.replace(/^\s+|\s+$/g,"")},o=Array[n].indexOf||function(t){var e=0,n=this.length;for(;e<n;e++){if(e in this&&this[e]===t){return e}}return-1},a=function(t,e){this.name=t;this.code=DOMException[t];this.message=e},l=function(t,e){if(e===""){throw new a("SYNTAX_ERR","An invalid or illegal string was specified")}if(/\s/.test(e)){throw new a("INVALID_CHARACTER_ERR","String contains an invali
725d character")}return o.call(t,e)},c=function(t){var e=s.call(t.className),n=e?e.split(/\s+/):[],i=0,r=n.length;for(;i<r;i++){this.push(n[i])}this._updateClassName=function(){t.className=this.toString()}},u=c[n]=[],h=function(){return new c(this)};a[n]=Error[n];u.item=function(t){return this[t]||null};u.contains=function(t){t+="";return l(this,t)!==-1};u.add=function(t){t+="";if(l(this,t)===-1){this.push(t);this._updateClassName()}};u.remove=function(t){t+="";var e=l(this,t);if(e!==-1){this.splice(e,1);this._updateClassName()}};u.toggle=function(t){t+="";if(l(this,t)===-1){this.add(t)}else{this.remove(t)}};u.toString=function(){return this.join(" ")};if(r.defineProperty){var f={get:h,enumerable:true,configurable:true};try{r.defineProperty(i,e,f)}catch(d){if(d.number===-2146823252){f.enumerable=false;r.defineProperty(i,e,f)}}}else if(r[n].__defineGetter__){i.__defineGetter__(e,h)}})(window)}};if(typeof RICKSHAW_NO_COMPAT!=="undefined"&&!RICKSHAW_NO_COMPAT||typeof RICKSHAW_NO_COMPAT==="undefined"){new Rickshaw.Compat.ClassList}Rickshaw.namespace("Rickshaw.Graph");Rickshaw.Graph=function(t){var e=this;this.initialize=function(t){if(!t.element)throw"Rickshaw.Graph needs a reference to an element";if(t.element.nodeType!==1)throw"Rickshaw.Graph element was defined but not an HTML element";this.element=t.element;this.series=t.series;this.window={};this.updateCallbacks=[];this.configureCallbacks=[];this.defaults={interpolation:"cardinal",offset:"zero",min:undefined,max:undefined,preserve:false,xScale:undefined,yScale:undefined};this._loadRenderers();this.configure(t);this.validateSeries(t.series);this.series.active=function(){return e.series.filter(function(t){return!t.disabled})};this.setSize({width:t.width,height:t.height});this.element.classList.add("rickshaw_graph");this.vis=d3.select(this.element).append("svg:svg").attr("width",this.width).attr("height",this.height);this.discoverRange()};this._loadRenderers=function(){for(var t in Rickshaw.Graph.Renderer){if(!t||!Rickshaw.Graph.Renderer.hasOwnProperty(t))continue;var n=Rickshaw.Graph.Renderer[t];if(!n||!n.prototype||!n.prototype.render)continue;e.registerRenderer(new n({graph:e}))}};this.validateSeries=function(t){if(!Array.isArray(t)&&!(t instanceof Rickshaw.Series)){var e=Object.prototype.toString.apply(t);throw"series is not an array: "+e}var n;t.forEach(function(t){if(!(t instanceof Object)){throw"series element is not an object: "+t}if(!t.data){throw"series has no data: "+JSON.stringify(t)}if(!Array.isArray(t.data)){throw"series data is not an array: "+JSON.stringify(t.data)}var e=t.data[0].x;var n=t.data[0].y;if(typeof e!="number"||typeof n!="number"&&n!==null){throw"x and y properties of points should be numbers instead of "+typeof e+" and "+typeof n}if(t.data.length>=3){if(t.data[2].x<t.data[1].x||t.data[1].x<t.data[0].x||t.data[t.data.length-1].x<t.data[0].x){throw"series data needs to be sorted on x values for series name: "+t.name}}},this)};this.dataDomain=function(){var t=this.series.map(function(t){return t.data});var e=d3.min(t.map(function(t){return t[0].x}));var n=d3.max(t.map(function(t){return t[t.length-1].x}));return[e,n]};this.discoverRange=function(){var t=this.renderer.domain();this.x=(this.xScale||d3.scale.linear()).domain(t.x).range([0,this.width]);this.y=(this.yScale||d3.scale.linear()).domain(t.y).range([this.height,0]);this.y.magnitude=d3.scale.linear().domain([t.y[0]-t.y[0],t.y[1]-t.y[0]]).range([0,this.height])};this.render=function(){var t=this.stackData();this.discoverRange();this.renderer.render();this.updateCallbacks.forEach(function(t){t()})};this.update=this.render;this.stackData=function(){var t=this.series.active().map(function(t){return t.data}).map(function(t){return t.filter(function(t){return this._slice(t)},this)},this);var n=this.preserve;if(!n){this.series.forEach(function(t){if(t.scale){n=true}})}t=n?Rickshaw.clone(t):t;this.series.active().forEach(function(e,n){if(e.scale){var i=t[n];if(i){i.forEach(function(t){t.y=e.scale(t.y)})}}});this.stackData.hooks.data.forEach(function(n){t=n.f.apply(e,[t])});var i;
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true};this.onUpdate=function(t){this.updateCallbacks.push(t)};this.onConfigure=function(t){this.configureCallbacks.push(t)};this.registerRenderer=function(t){this._renderers=this._renderers||{};this._renderers[t.name]=t};this.configure=function(t){this.config=this.config||{};if(t.width||t.height){this.setSize(t)}Rickshaw.keys(this.defaults).forEach(function(e){this.config[e]=e in t?t[e]:e in this?this[e]:this.defaults[e]},this);Rickshaw.keys(this.config).forEach(function(t){this[t]=this.config[t]},this);var e=t.renderer||this.renderer&&this.renderer.name||"stack";this.setRenderer(e,t);this.configureCallbacks.forEach(function(e){e(t)})};this.setRenderer=function(t,n){if(typeof t=="function"){this.renderer=new t({graph:e});this.registerRenderer(this.renderer)}else{if(!this._renderers[t]){throw"couldn't find renderer "+t}this.renderer=this._renderers[t]}if(typeof n=="object"){this.renderer.configure(n)}};this.setSize=function(t){t=t||{};if(typeof window!==undefined){var e=window.getComputedStyle(this.element,null);var n=parseInt(e.getPropertyValue("width"),10);var i=parseInt(e.getPropertyValue("height"),10)}this.width=t.width||n||400;this.height=t.height||i||250;this.vis&&this.vis.attr("width",this.width).attr("height",this.height)};this.initialize(t)};Rickshaw.namespace("Rickshaw.Fixtures.Color");Rickshaw.Fixtures.Color=function(){this.schemes={};this.schemes.spectrum14=["#ecb796","#dc8f70","#b2a470","#92875a","#716c49","#d2ed82","#bbe468","#a1d05d","#e7cbe6","#d8aad6","#a888c2","#9dc2d3","#649eb9","#387aa3"].reverse();this.schemes.spectrum2000=["#57306f","#514c76","#646583","#738394","#6b9c7d","#84b665","#a7ca50","#bfe746","#e2f528","#fff726","#ecdd00","#d4b11d","#de8800","#de4800","#c91515","#9a0000","#7b0429","#580839","#31082b"];this.schemes.spectrum2001=["#2f243f","#3c2c55","#4a3768","#565270","#6b6b7c","#72957f","#86ad6e","#a1bc5e","#b8d954","#d3e04e","#ccad2a","#cc8412","#c1521d","#ad3821","#8a1010","#681717","#531e1e","#3d1818","#320a1b"];this.schemes.classic9=["#423d4f","#4a6860","#848f39","#a2b73c","#ddcb53","#c5a32f","#7d5836","#963b20","#7c2626","#491d37","#2f254a"].reverse();this.schemes.httpStatus={503:"#ea5029",502:"#d23f14",500:"#bf3613",410:"#efacea",409:"#e291dc",403:"#f457e8",408:"#e121d2",401:"#b92dae",405:"#f47ceb",404:"#a82a9f",400:"#b263c6",301:"#6fa024",302:"#87c32b",307:"#a0d84c",304:"#28b55c",200:"#1a4f74",206:"#27839f",201:"#52adc9",202:"#7c979f",203:"#a5b8bd",204:"#c1cdd1"};this.schemes.colorwheel=["#b5b6a9","#858772","#785f43","#96557e","#4682b4","#65b9ac","#73c03a","#cb513a"].reverse();this.schemes.cool=["#5e9d2f","#73c03a","#4682b4","#7bc3b8","#a9884e","#c1b266","#a47493","#c09fb5"];this.schemes.munin=["#00cc00","#0066b3","#ff8000","#ffcc00","#330099","#990099","#ccff00","#ff0000","#808080","#008f00","#00487d","#b35a00","#b38f00","#6b006b","#8fb300","#b30000","#bebebe","#80ff80","#80c9ff","#ffc080","#ffe680","#aa80ff","#ee00cc","#ff8080","#666600","#ffbfff","#00ffcc","#cc6699","#999900"]};Rickshaw.namespace("Rickshaw.Fixtures.RandomData");Rickshaw.Fixtures.RandomData=function(t){var e;t=t||1;var n=200;var i=Math.floor((new Date).getTime()/1e3);this.addData=function(e){var r=Math.random()*100+15+n;var s=e[0].length;var o=1;e.forEach(function(e){var n=Math.random()*20;var a=r/25+o+++(Math.cos(s*o*11/960)+2)*15+(Math.cos(s/7)+2)*7+(Math.cos(s/17)+2)*1;e.push({x:s*t+i,y:a+n})});n=r*.85};this.removeData=function(e){e.forEach(function(t){t.shift()});i+=t}};Rickshaw.namespace("Rickshaw.Fixtures.Time");Rickshaw.Fixtures.Time=function(){var t=this;this.months=["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"];this.units=[{name:"decade",seconds:86400*365.25*10,formatter:function(t){return parseInt(t.getUTCFullYear()/10,10)*10}},{name:"year",seconds:86400*365.25,formatter:function(t){return t.getUTCFullYear()}},{name:"month",seconds:86400*30.5,formatter:function(e){return t.months[e.getUTCMonth()]}},{name:"week",seconds:86400*7,formatter:function(e){return t.formatDate(e)}},{name:"day",seconds:86400,formatter:function(t){return t.getUTCDate()}},{name:"6 hour",seconds:3600*6,formatter:function(e){return t.formatTime(e)}},{name:"hour",seconds:3600,formatter:function(e){return t.formatTime(e)}},{name:"15 minute",seconds:60*15,formatter:function(e){return t.formatTime(e)}},{name:"minute",seconds:60,formatter:function(t){return t.getUTCMinutes()}},{name:"15 second",seconds:15,formatter:function(t){return t.getUTCSeconds()+"s"}},{name:"second",seconds:1,formatter:function(t){return t.getUTCSeconds()+"s"}},{name:"decisecond",seconds:1/10,formatter:function(t){return t.getUTCMilliseconds()+"ms"}},{name:"centisecond",seconds:1/100,formatter:function(t){return t.getUTCMilliseconds()+"ms"}}];this.unit=function(t){return this.units.filter(function(e){return t==e.name}).shift()};this.formatDate=function(t){return d3.time.format("%b %e")(t)};this.formatTime=function(t){return t.toUTCString().match(/(\d+:\d+):/)[1]};this.ceil=function(t,e){var n,i,r;if(e.name=="month"){n=new Date(t*1e3);i=Date.UTC(n.getUTCFullYear(),n.getUTCMonth())/1e3;if(i==t)return t;r=n.getUTCFullYear();var s=n.getUTCMonth();if(s==11){s=0;r=r+1}else{s+=1}return Date.UTC(r,s)/1e3}if(e.name=="year"){n=new Date(t*1e3);i=Date.UTC(n.getUTCFullYear(),0)/1e3;if(i==t)return t;r=n.getUTCFullYear()+1;return Date.UTC(r,0)/1e3}return Math.ceil(t/e.seconds)*e.seconds}};Rickshaw.namespace("Rickshaw.Fixtures.Time.Local");Rickshaw.Fixtures.Time.Local=function(){var t=this;this.months=["Jan","Feb","Mar","Apr","May","Jun","Jul","Aug","Sep","Oct","Nov","Dec"];this.units=[{name:"decade",seconds:86400*365.25*10,formatter:function(t){return parseInt(t.getFullYear()/10,10)*10}},{name:"year",seconds:86400*365.25,formatter:function(t){return t.getFullYear()}},{name:"month",seconds:86400*30.5,formatter:function(e){return t.months[e.getMonth()]}},{name:"week",seconds:86400*7,formatter:function(e){return t.formatDate(e)}},{name:"day",seconds:86400,formatter:function(t){return t.getDate()}},{name:"6 hour",seconds:3600*6,formatter:function(e){return t.formatTime(e)}},{name:"hour",seconds:3600,formatter:function(e){return t.formatTime(e)}},{name:"15 minute",seconds:60*15,formatter:function(e){return t.formatTime(e)}},{name:"minute",seconds:60,formatter:function(t){return t.getMinutes()}},{name:"15 second",seconds:15,formatter:function(t){return t.getSeconds()+"s"}},{name:"second",seconds:1,formatter:function(t){return t.getSeconds()+"s"}},{name:"decisecond",seconds:1/10,formatter:function(t){return t.getMilliseconds()+"ms"}},{name:"centisecond",seconds:1/100,formatter:function(t){return t.getMilliseconds()+"ms"}}];this.unit=function(t){return this.units.filter(function(e){return t==e.name}).shift()};this.formatDate=function(t){return d3.time.format("%b %e")(t)};this.formatTime=function(t){return t.toString().match(/(\d+:\d+):/)[1]};this.ceil=function(t,e){var n,i,r;if(e.name=="day"){var s=new Date((t+e.seconds-1)*1e3);var o=new Date(0);o.setMilliseconds(0);o.setSeconds(0);o.setMinutes(0);o.setHours(0);o.setDate(s.getDate());o.setMonth(s.getMonth());o.setFullYear(s.getFullYear());return o.getTime()/1e3}if(e.name=="month"){n=new Date(t*1e3);i=new Date(n.getFullYear(),n.getMonth()).getTime()/1e3;if(i==t)return t;r=n.getFullYear();var a=n.getMonth();if(a==11){a=0;r=r+1}else{a+=1}return new Date(r,a).getTime()/1e3}if(e.name=="year"){n=new Date(t*1e3);i=new Date(n.getUTCFullYear(),0).getTime()/1e3;if(i==t)return t;r=n.getFullYear()+1;return new Date(r,0).getTime()/1e3}return Math.ceil(t/e.seconds)*e.seconds}};Rickshaw.namespace("Rickshaw.Fixtures.Number");Rickshaw.Fixtures.Number.formatKMBT=function(t){var e=Math.abs(t);if(e>=1e12){return t/1e12+"T"}else if(e>=1e9){return t/1e9+"B"}else if(e>=1e6){return t/1e6+"M"}else if(e>=1e3){return t/1e3+"K"}else if(e<1&&t>0){return t.toFixed(2)}else if(e===0){return""}else{return t}};Rickshaw.Fixtures.Number.formatBase1024KMGTP=function(t){var e=Math.abs(t);if(e>=0x4000000000000){return t/0x4000000000000+"P"}else if(e>=1099511627776){return t/1099511627776+"T"}else if(e>=1073741824){return t/1073741824+"G"}else if(e>=1048576){return t/1048576+"M"}else if(e>=1024){return t/1024+"K"}else if(e<1&&t>0){return t.toFixed(2)}else if(e===0){return""}else{return t}};Rickshaw.namespace("Rickshaw.Color.Palette");Rickshaw.Color.Palette=function(t){var e=new Rickshaw.Fixtures.Color;t=t||{};this.schemes={};this.scheme=e.schemes[t.scheme]||t.scheme||e.schemes.colorwheel;this.runningIndex=0;this.generatorIndex=0;if(t.interpolatedStopCount){var n=this.scheme.length-1;var i,r,s=[];for(i=0;i<n;i++){s.push(this.scheme[i]);var o=d3.interpolateHsl(this.scheme[i],this.scheme[i+1]);for(r=1;r<t.interpolatedStopCount;r++){s.push(o(1/t.interpolatedStopCount*r))}}s.push(this.scheme[this.scheme.length-1]);this.scheme=s}this.rotateCount=this.scheme.length;this.color=function(t){return this.scheme[t]||this.scheme[this.runningIndex++]||this.interpolateColor()||"#808080"};this.interpolateColor=function(){if(!Array.isArray(this.scheme))return;var t;if(this.generatorIndex==this.rotateCount*2-1){t=d3.interpolateHsl(this.scheme[this.generatorIndex],this.scheme[0])(.5);this.generatorIndex=0;this.rotateCount*=2}else{t=d3.interpolateHsl(this.scheme[this.generatorIndex],this.scheme[this.generatorIndex+1])(.5);this.generatorIndex++}this.scheme.push(t);return t}};Rickshaw.namespace("Rickshaw.Graph.Ajax");Rickshaw.Graph.Ajax=Rickshaw.Class.create({initialize:function(t){this.dataURL=t.dataURL;this.onData=t.onData||function(t){return t};this.onComplete=t.onComplete||function(){};this.onError=t.onError||function(){};this.args=t;this.request()},request:function(){$.ajax({url:this.dataURL,dataType:"json",success:this.success.bind(this),error:this.error.bind(this)})},error:function(){console.log("error loading dataURL: "+this.dataURL);this.onError(this)},success:function(t,e){t=this.onData(t);this.args.series=this._splice({data:t,series:this.args.series});this.graph=this.graph||new Rickshaw.Graph(this.args);this.graph.render();this.onComplete(this)},_splice:function(t){var e=t.data;var n=t.series;if(!t.series)return e;
725n.forEach(function(t){var n=t.key||t.name;if(!n)throw"series needs a key or a name";e.forEach(function(e){var i=e.key||e.name;if(!i)throw"data needs a key or a name";if(n==i){var r=["color","name","data"];r.forEach(function(n){if(e[n])t[n]=e[n]})}})});return n}});Rickshaw.namespace("Rickshaw.Graph.Annotate");Rickshaw.Graph.Annotate=function(t){var e=this.graph=t.graph;this.elements={timeline:t.element};var n=this;this.data={};this.elements.timeline.classList.add("rickshaw_annotation_timeline");this.add=function(t,e,i){n.data[t]=n.data[t]||{boxes:[]};n.data[t].boxes.push({content:e,end:i})};this.update=function(){Rickshaw.keys(n.data).forEach(function(t){var e=n.data[t];var i=n.graph.x(t);if(i<0||i>n.graph.x.range()[1]){if(e.element){e.line.classList.add("offscreen");e.element.style.display="none"}e.boxes.forEach(function(t){if(t.rangeElement)t.rangeElement.classList.add("offscreen")});return}if(!e.element){var r=e.element=document.createElement("div");r.classList.add("annotation");this.elements.timeline.appendChild(r);r.addEventListener("click",function(t){r.classList.toggle("active");e.line.classList.toggle("active");e.boxes.forEach(function(t){if(t.rangeElement)t.rangeElement.classList.toggle("active")})},false)}e.element.style.left=i+"px";e.element.style.display="block";e.boxes.forEach(function(t){var r=t.element;if(!r){r=t.element=document.createElement("div");r.classList.add("content");r.innerHTML=t.content;e.element.appendChild(r);e.line=document.createElement("div");e.line.classList.add("annotation_line");n.graph.element.appendChild(e.line);if(t.end){t.rangeElement=document.createElement("div");t.rangeElement.classList.add("annotation_range");n.graph.element.appendChild(t.rangeElement)}}if(t.end){var s=i;var o=Math.min(n.graph.x(t.end),n.graph.x.range()[1]);if(s>o){o=i;s=Math.max(n.graph.x(t.end),n.graph.x.range()[0])}var a=o-s;t.rangeElement.style.left=s+"px";t.rangeElement.style.width=a+"px";t.rangeElement.classList.remove("offscreen")}e.line.classList.remove("offscreen");e.line.style.left=i+"px"})},this)};this.graph.onUpdate(function(){n.update()})};Rickshaw.namespace("Rickshaw.Graph.Axis.Time");Rickshaw.Graph.Axis.Time=function(t){var e=this;this.graph=t.graph;this.elements=[];this.ticksTreatment=t.ticksTreatment||"plain";this.fixedTimeUnit=t.timeUnit;var n=t.timeFixture||new Rickshaw.Fixtures.Time;this.appropriateTimeUnit=function(){var t;var e=n.units;var i=this.graph.x.domain();var r=i[1]-i[0];e.forEach(function(e){if(Math.floor(r/e.seconds)>=2){t=t||e}});return t||n.units[n.units.length-1]};this.tickOffsets=function(){var t=this.graph.x.domain();var e=this.fixedTimeUnit||this.appropriateTimeUnit();var i=Math.ceil((t[1]-t[0])/e.seconds);var r=t[0];var s=[];for(var o=0;o<i;o++){var a=n.ceil(r,e);r=a+e.seconds/2;s.push({value:a,unit:e})}return s};this.render=function(){this.elements.forEach(function(t){t.parentNode.removeChild(t)});this.elements=[];var t=this.tickOffsets();t.forEach(function(t){if(e.graph.x(t.value)>e.graph.x.range()[1])return;var n=document.createElement("div");n.style.left=e.graph.x(t.value)+"px";n.classList.add("x_tick");n.classList.add(e.ticksTreatment);var i=document.createElement("div");i.classList.add("title");i.innerHTML=t.unit.formatter(new Date(t.value*1e3));n.appendChild(i);e.graph.element.appendChild(n);e.elements.push(n)})};this.graph.onUpdate(function(){e.render()})};Rickshaw.namespace("Rickshaw.Graph.Axis.X");Rickshaw.Graph.Axis.X=function(t){var e=this;var n=.1;this.initialize=function(t){this.graph=t.graph;this.orientation=t.orientation||"top";this.pixelsPerTick=t.pixelsPerTick||75;if(t.ticks)this.staticTicks=t.ticks;if(t.tickValues)this.tickValues=t.tickValues;this.tickSize=t.tickSize||4;this.ticksTreatment=t.ticksTreatment||"plain";if(t.element){this.element=t.element;this._discoverSize(t.element,t);this.vis=d3.select(t.element).append("svg:svg").attr("height",this.height).attr("width",this.width).attr("class","rickshaw_graph x_axis_d3");this.element=this.vis[0][0];this.element.style.position="relative";this.setSize({width:t.width,height:t.height})}else{this.vis=this.graph.vis}
725this.graph.onUpdate(function(){e.render()})};this.setSize=function(t){t=t||{};if(!this.element)return;this._discoverSize(this.element.parentNode,t);this.vis.attr("height",this.height).attr("width",this.width*(1+n));var e=Math.floor(this.width*n/2);this.element.style.left=-1*e+"px"};this.render=function(){if(this._renderWidth!==undefined&&this.graph.width!==this._renderWidth)this.setSize({auto:true});var e=d3.svg.axis().scale(this.graph.x).orient(this.orientation);e.tickFormat(t.tickFormat||function(t){return t});if(this.tickValues)e.tickValues(this.tickValues);this.ticks=this.staticTicks||Math.floor(this.graph.width/this.pixelsPerTick);var i=Math.floor(this.width*n/2)||0;var r;if(this.orientation=="top"){var s=this.height||this.graph.height;r="translate("+i+","+s+")"}else{r="translate("+i+", 0)"}if(this.element){this.vis.selectAll("*").remove()}this.vis.append("svg:g").attr("class",["x_ticks_d3",this.ticksTreatment].join(" ")).attr("transform",r).call(e.ticks(this.ticks).tickSubdivide(0).tickSize(this.tickSize));var o=(this.orientation=="bottom"?1:-1)*this.graph.height;this.graph.vis.append("svg:g").attr("class","x_grid_d3").call(e.ticks(this.ticks).tickSubdivide(0).tickSize(o)).selectAll("text").each(function(){this.parentNode.setAttribute("data-x-value",this.textContent)});this._renderHeight=this.graph.height};this._discoverSize=function(t,e){if(typeof window!=="undefined"){var i=window.getComputedStyle(t,null);var r=parseInt(i.getPropertyValue("height"),10);if(!e.auto){var s=parseInt(i.getPropertyValue("width"),10)}}this.width=(e.width||s||this.graph.width)*(1+n);this.height=e.height||r||40};this.initialize(t)};Rickshaw.namespace("Rickshaw.Graph.Axis.Y");Rickshaw.Graph.Axis.Y=Rickshaw.Class.create({initialize:function(t){this.graph=t.graph;this.orientation=t.orientation||"right";this.pixelsPerTick=t.pixelsPerTick||75;if(t.ticks)this.staticTicks=t.ticks;if(t.tickValues)this.tickValues=t.tickValues;this.tickSize=t.tickSize||4;this.ticksTreatment=t.ticksTreatment||"plain";this.tickFormat=t.tickFormat||function(t){return t};this.berthRate=.1;if(t.element){this.element=t.element;this.vis=d3.select(t.element).append("svg:svg").attr("class","rickshaw_graph y_axis");this.element=this.vis[0][0];this.element.style.position="relative";this.setSize({width:t.width,height:t.height})}else{this.vis=this.graph.vis}var e=this;this.graph.onUpdate(function(){e.render()})},setSize:function(t){t=t||{};if(!this.element)return;if(typeof window!=="undefined"){var e=window.getComputedStyle(this.element.parentNode,null);var n=parseInt(e.getPropertyValue("width"),10);if(!t.auto){var i=parseInt(e.getPropertyValue("height"),10)}}this.width=t.width||n||this.graph.width*this.berthRate;this.height=t.height||i||this.graph.height;this.vis.attr("width",this.width).attr("height",this.height*(1+this.berthRate));var r=this.height*this.berthRate;if(this.orientation=="left"){this.element.style.top=-1*r+"px"}},render:function(){if(this._renderHeight!==undefined&&this.graph.height!==this._renderHeight)this.setSize({auto:true});this.ticks=this.staticTicks||Math.floor(this.graph.height/this.pixelsPerTick);var t=this._drawAxis(this.graph.y);this._drawGrid(t);this._renderHeight=this.graph.height},_drawAxis:function(t){var e=d3.svg.axis().scale(t).orient(this.orientation);e.tickFormat(this.tickFormat);if(this.tickValues)e.tickValues(this.tickValues);if(this.orientation=="left"){var n=this.height*this.berthRate;var i="translate("+this.width+", "+n+")"}if(this.element){this.vis.selectAll("*").remove()}this.vis.append("svg:g").attr("class",["y_ticks",this.ticksTreatment].join(" ")).attr("transform",i).call(e.ticks(this.ticks).tickSubdivide(0).tickSize(this.tickSize));return e},_drawGrid:function(t){var e=(this.orientation=="right"?1:-1)*this.graph.width;this.graph.vis.append("svg:g").attr("class","y_grid").call(t.ticks(this.ticks).tickSubdivide(0).tickSize(e)).selectAll("text").each(function(){this.parentNode.setAttribute("data-y-value",this.textContent)})}});Rickshaw.namespace("Rickshaw.Graph.Axis.Y.Scaled") 726;Rickshaw.Graph.Axis.Y.Scaled=Rickshaw.Class.create(Rickshaw.Graph.Axis.Y,{initialize:function($super,t){if(typeof t.scale==="undefined"){throw new Error("Scaled requires scale")}this.scale=t.scale;if(typeof t.grid==="undefined"){this.grid=true}else{this.grid=t.grid}$super(t)},_drawAxis:function($super,t){var e=this.scale.domain();var n=this.graph.renderer.domain().y;var i=[Math.min.apply(Math,e),Math.max.apply(Math,e)];var r=d3.scale.linear().domain([0,1]).range(i);var s=[r(n[0]),r(n[1])];var o=d3.scale.linear().domain(i).range(s);var a=this.scale.copy().domain(e.map(o)).range(t.range());return $super(a)}
726,_drawGrid:function($super,t){if(this.grid){$super(t)}}});Rickshaw.namespace("Rickshaw.Graph.Behavior.Series.Highlight");Rickshaw.Graph.Behavior.Series.Highlight=function(t){this.graph=t.graph;this.legend=t.legend;var e=this;var n={};var i=null;var r=t.disabledColor||function(t){return d3.interpolateRgb(t,d3.rgb("#d8d8d8"))(.8).toString()};this.addHighlightEvents=function(t){t.element.addEventListener("mouseover",function(s){if(i)return;else i=t;e.legend.lines.forEach(function(i){if(t===i){if(e.graph.renderer.unstack&&(i.series.renderer?i.series.renderer.unstack:true)){var s=e.graph.series.indexOf(i.series);i.originalIndex=s;var o=e.graph.series.splice(s,1)[0];e.graph.series.push(o)}return}n[i.series.name]=n[i.series.name]||i.series.color;i.series.color=r(i.series.color)});e.graph.update()},false);t.element.addEventListener("mouseout",function(r){if(!i)return;else i=null;e.legend.lines.forEach(function(i){if(t===i&&i.hasOwnProperty("originalIndex")){var r=e.graph.series.pop();e.graph.series.splice(i.originalIndex,0,r);delete i.originalIndex}if(n[i.series.name]){i.series.color=n[i.series.name]}});e.graph.update()},false)};if(this.legend){this.legend.lines.forEach(function(t){e.addHighlightEvents(t)})}};Rickshaw.namespace("Rickshaw.Graph.Behavior.Series.Order");Rickshaw.Graph.Behavior.Series.Order=function(t){this.graph=t.graph;this.legend=t.legend;var e=this;if(typeof window.$=="undefined"){throw"couldn't find jQuery at window.$"}if(typeof window.$.ui=="undefined"){throw"couldn't find jQuery UI at window.$.ui"}$(function(){$(e.legend.list).sortable({containment:"parent",tolerance:"pointer",update:function(t,n){var i=[];$(e.legend.list).find("li").each(function(t,e){if(!e.series)return;i.push(e.series)});for(var r=e.graph.series.length-1;r>=0;r--){e.graph.series[r]=i.shift()}e.graph.update()}});$(e.legend.list).disableSelection()});this.graph.onUpdate(function(){var t=window.getComputedStyle(e.legend.element).height;e.legend.element.style.height=t})};Rickshaw.namespace("Rickshaw.Graph.Behavior.Series.Toggle");Rickshaw.Graph.Behavior.Series.Toggle=function(t){this.graph=t.graph;this.legend=t.legend;var e=this;this.addAnchor=function(t){var n=document.createElement("a");n.innerHTML="✔";n.classList.add("action");t.element.insertBefore(n,t.element.firstChild);n.onclick=function(e){if(t.series.disabled){t.series.enable();t.element.classList.remove("disabled")}else{if(this.graph.series.filter(function(t){return!t.disabled}).length<=1)return;t.series.disable();t.element.classList.add("disabled")}}.bind(this);var i=t.element.getElementsByTagName("span")[0];i.onclick=function(n){var i=t.series.disabled;if(!i){for(var r=0;r<e.legend.lines.length;r++){var s=e.legend.lines[r];if(t.series===s.series){}else if(s.series.disabled){}else{i=true;break}}}if(i){t.series.enable();t.element.classList.remove("disabled");e.legend.lines.forEach(function(e){if(t.series===e.series){}else{e.series.disable();e.element.classList.add("disabled")}})}else{e.legend.lines.forEach(function(t){t.series.enable();t.element.classList.remove("disabled")})}}};if(this.legend){if(typeof $!="undefined"&&$(this.legend.list).sortable){$(this.legend.list).sortable({start:function(t,e){e.item.bind("no.onclick",function(t){t.preventDefault()})},stop:function(t,e){setTimeout(function(){e.item.unbind("no.onclick")},250)}})}this.legend.lines.forEach(function(t){e.addAnchor(t)})}this._addBehavior=function(){this.graph.series.forEach(function(t){t.disable=function(){if(e.graph.series.length<=1){throw"only one series left"}t.disabled=true;e.graph.update()};t.enable=function(){t.disabled=false;e.graph.update()}})};this._addBehavior();this.updateBehaviour=function(){this._addBehavior()}};Rickshaw.namespace("Rickshaw.Graph.HoverDetail");Rickshaw.Graph.HoverDetail=Rickshaw.Class.create({initialize:function(t){var e=this.graph=t.graph;this.xFormatter=t.xFormatter||function(t){return new Date(t*1e3).toUTCString()};this.yFormatter=t.yFormatter||function(t){return t===null?t:t.toFixed(2)};var n=this.element=document.createElement("div");n.className="detail";this.visible=true;e.element.appendChild(n);this.lastEvent=null;this._addListeners();this.onShow=t.onShow;this.onHide=t.onHide;this.onRender=t.onRender;this.formatter=t.formatter||this.formatter},formatter:function(t,e,n,i,r,s){return t.name+": "+r},update:function(t){t=t||this.lastEvent;if(!t)return;this.lastEvent=t;if(!t.target.nodeName.match(/^(path|svg|rect|circle)$/))return;var e=this.graph;var n=t.offsetX||t.layerX;var i=t.offsetY||t.layerY;var r=0;var s=[];var o;
726this.graph.series.active().forEach(function(t){var a=this.graph.stackedData[r++];if(!a.length)return;var l=e.x.invert(n);var c=d3.scale.linear().domain([a[0].x,a.slice(-1)[0].x]).range([0,a.length-1]);var u=Math.round(c(l));if(u==a.length-1)u--;var h=Math.min(u||0,a.length-1);for(var f=u;f<a.length-1;){if(!a[f]||!a[f+1])break;if(a[f].x<=l&&a[f+1].x>l){h=Math.abs(l-a[f].x)<Math.abs(l-a[f+1].x)?f:f+1;break}if(a[f+1].x<=l){f++}else{f--}}if(h<0)h=0;var d=a[h];var p=Math.sqrt(Math.pow(Math.abs(e.x(d.x)-n),2)+Math.pow(Math.abs(e.y(d.y+d.y0)-i),2));var m=t.xFormatter||this.xFormatter;var g=t.yFormatter||this.yFormatter;var _={formattedXValue:m(d.x),formattedYValue:g(t.scale?t.scale.invert(d.y):d.y),series:t,value:d,distance:p,order:r,name:t.name};if(!o||p<o.distance){o=_}s.push(_)},this);if(!o)return;o.active=true;var a=o.value.x;var l=o.formattedXValue;this.element.innerHTML="";this.element.style.left=e.x(a)+"px";this.visible&&this.render({points:s,detail:s,mouseX:n,mouseY:i,formattedXValue:l,domainX:a})},hide:function(){this.visible=false;this.element.classList.add("inactive");if(typeof this.onHide=="function"){this.onHide()}},show:function(){this.visible=true;this.element.classList.remove("inactive");if(typeof this.onShow=="function"){this.onShow()}},render:function(t){var e=this.graph;var n=t.points;var i=n.filter(function(t){return t.active}).shift();if(i.value.y===null)return;var r=i.formattedXValue;var s=i.formattedYValue;this.element.innerHTML="";this.element.style.left=e.x(i.value.x)+"px";var o=document.createElement("div");o.className="x_label";o.innerHTML=r;this.element.appendChild(o);var a=document.createElement("div");a.className="item";var l=i.series;var c=l.scale?l.scale.invert(i.value.y):i.value.y;a.innerHTML=this.formatter(l,i.value.x,c,r,s,i);a.style.top=this.graph.y(i.value.y0+i.value.y)+"px";this.element.appendChild(a);var u=document.createElement("div");u.className="dot";u.style.top=a.style.top;u.style.borderColor=l.color;this.element.appendChild(u);if(i.active){a.classList.add("active");u.classList.add("active")}var h=[o,a];h.forEach(function(t){t.classList.add("left")});this.show();var f=this._calcLayoutError(h);if(f>0){h.forEach(function(t){t.classList.remove("left");t.classList.add("right")});var d=this._calcLayoutError(h);if(d>f){h.forEach(function(t){t.classList.remove("right");t.classList.add("left")})}}if(typeof this.onRender=="function"){this.onRender(t)}},_calcLayoutError:function(t){var e=this.element.parentNode.getBoundingClientRect();var n=0;var i=t.forEach(function(t){var i=t.getBoundingClientRect();if(!i.width){return}if(i.right>e.right){n+=i.right-e.right}if(i.left<e.left){n+=e.left-i.left}});return n},_addListeners:function(){this.graph.element.addEventListener("mousemove",function(t){this.visible=true;this.update(t)}.bind(this),false);this.graph.onUpdate(function(){this.update()}.bind(this));this.graph.element.addEventListener("mouseout",function(t){if(t.relatedTarget&&!(t.relatedTarget.compareDocumentPosition(this.graph.element)&Node.DOCUMENT_POSITION_CONTAINS)){this.hide()}}.bind(this),false)}});Rickshaw.namespace("Rickshaw.Graph.JSONP");Rickshaw.Graph.JSONP=Rickshaw.Class.create(Rickshaw.Graph.Ajax,{request:function(){$.ajax({url:this.dataURL,dataType:"jsonp",success:this.success.bind(this),error:this.error.bind(this)})}});Rickshaw.namespace("Rickshaw.Graph.Legend");Rickshaw.Graph.Legend=Rickshaw.Class.create({className:"rickshaw_legend",initialize:function(t){this.element=t.element;this.graph=t.graph;this.naturalOrder=t.naturalOrder;this.element.classList.add(this.className);this.list=document.createElement("ul");this.element.appendChild(this.list);this.render();this.graph.onUpdate(function(){})},render:function(){var t=this;while(this.list.firstChild){this.list.removeChild(this.list.firstChild)}this.lines=[];var e=this.graph.series.map(function(t){return t});if(!this.naturalOrder){e=e.reverse()}e.forEach(function(e){t.addLine(e)})},addLine:function(t){var e=document.createElement("li");e.className="line";if(t.disabled){e.className+=" disabled"}if(t.className){d3.select(e).classed(t.className,true)}var n=document.createElement("div");n.className="swatch";n.style.backgroundColor=t.color;e.appendChild(n);var i=document.createElement("span");i.className="label";i.innerHTML=t.name;e.appendChild(i);this.list.appendChild(e);e.series=t;if(t.noLegend){e.style.display="none"}var r={element:e,series:t};if(this.shelving){this.shelving.addAnchor(r);this.shelving.updateBehaviour()}if(this.highlighter){this.highlighter.addHighlightEvents(r)}this.lines.push(r);return e}});Rickshaw.namespace("Rickshaw.Graph.RangeSlider");Rickshaw.Graph.RangeSlider=Rickshaw.Class.create({initialize:function(t){var e=this.element=t.element;var n=this.graph=t.graph;this.build();n.onUpdate(function(){this.update()}.bind(this))},build:function(){var t=this.element;var e=this.graph;var n=e.dataDomain();$(function(){$(t).slider({range:true,min:n[0],max:n[1],values:[n[0],n[1]],slide:function(t,n){if(n.values[1]<=n.values[0])return;e.window.xMin=n.values[0];e.window.xMax=n.values[1];
726e.update();var i=e.dataDomain();if(i[0]==n.values[0]){e.window.xMin=undefined}if(i[1]==n.values[1]){e.window.xMax=undefined}}})});$(t)[0].style.width=e.width+"px"},update:function(){var t=this.element;var e=this.graph;var n=$(t).slider("option","values");var i=e.dataDomain();$(t).slider("option","min",i[0]);$(t).slider("option","max",i[1]);if(e.window.xMin==null){n[0]=i[0]}if(e.window.xMax==null){n[1]=i[1]}$(t).slider("option","values",n)}});Rickshaw.namespace("Rickshaw.Graph.RangeSlider.Preview");Rickshaw.Graph.RangeSlider.Preview=Rickshaw.Class.create({initialize:function(t){if(!t.element)throw"Rickshaw.Graph.RangeSlider.Preview needs a reference to an element";if(!t.graph&&!t.graphs)throw"Rickshaw.Graph.RangeSlider.Preview needs a reference to an graph or an array of graphs";this.element=t.element;this.graphs=t.graph?[t.graph]:t.graphs;this.defaults={height:75,width:400,gripperColor:undefined,frameTopThickness:3,frameHandleThickness:10,frameColor:"#d4d4d4",frameOpacity:1,minimumFrameWidth:0};this.defaults.gripperColor=d3.rgb(this.defaults.frameColor).darker().toString();this.configureCallbacks=[];this.previews=[];t.width=t.width||this.graphs[0].width||this.defaults.width;t.height=t.height||this.graphs[0].height/5||this.defaults.height;this.configure(t);this.render()},onConfigure:function(t){this.configureCallbacks.push(t)},configure:function(t){this.config={};this.configureCallbacks.forEach(function(e){e(t)});Rickshaw.keys(this.defaults).forEach(function(e){this.config[e]=e in t?t[e]:e in this.config?this.config[e]:this.defaults[e]},this);if(t.width){this.previews.forEach(function(e){var n=t.width-this.config.frameHandleThickness*2;e.setSize({width:n})},this)}if(t.height){this.previews.forEach(function(t){var e=this.previewHeight/this.graphs.length;t.setSize({height:e})},this)}},render:function(){var t=this;this.svg=d3.select(this.element).selectAll("svg.rickshaw_range_slider_preview").data([null]);this.previewHeight=this.config.height-this.config.frameTopThickness*2;this.previewWidth=this.config.width-this.config.frameHandleThickness*2;this.currentFrame=[0,this.previewWidth];var e=function(e,n){var i=Rickshaw.extend({},e.config);var r=t.previewHeight/t.graphs.length;Rickshaw.extend(i,{element:this.appendChild(document.createElement("div")),height:r,width:t.previewWidth,series:e.series});var s=new Rickshaw.Graph(i);t.previews.push(s);e.onUpdate(function(){s.render();t.render()});e.onConfigure(function(t){delete t.height;s.configure(t);s.render()});s.render()};var n=d3.select(this.element).selectAll("div.rickshaw_range_slider_preview_container").data(this.graphs);var i="translate("+this.config.frameHandleThickness+"px, "+this.config.frameTopThickness+"px)";n.enter().append("div").classed("rickshaw_range_slider_preview_container",true).style("-webkit-transform",i).style("-moz-transform",i).style("-ms-transform",i).style("transform",i).each(e);n.exit().remove();var r=this.graphs[0];var s=d3.scale.linear().domain([0,this.previewWidth]).range(r.dataDomain());var o=[r.window.xMin,r.window.xMax];this.currentFrame[0]=o[0]===undefined?0:Math.round(s.invert(o[0]));if(this.currentFrame[0]<0)this.currentFrame[0]=0;this.currentFrame[1]=o[1]===undefined?this.previewWidth:s.invert(o[1]);if(this.currentFrame[1]-this.currentFrame[0]<t.config.minimumFrameWidth){this.currentFrame[1]=(this.currentFrame[0]||0)+t.config.minimumFrameWidth}this.svg.enter().append("svg").classed("rickshaw_range_slider_preview",true).style("height",this.config.height+"px").style("width",this.config.width+"px").style("position","relative").style("top",-this.previewHeight+"px");this._renderDimming();this._renderFrame();this._renderGrippers();this._renderHandles();this._renderMiddle();this._registerMouseEvents()},_renderDimming:function(){var t=this.svg.selectAll("path.dimming").data([null]);t.enter().append("path").attr("fill","white").attr("fill-opacity","0.7").attr("fill-rule","evenodd").classed("dimming",true);var e="";e+=" M "+this.config.frameHandleThickness+" "+this.config.frameTopThickness;e+=" h "+this.previewWidth;e+=" v "+this.previewHeight;e+=" h "+-this.previewWidth;e+=" z ";e+=" M "+Math.max(this.currentFrame[0],this.config.frameHandleThickness)+" "+this.config.frameTopThickness;e+=" H "+Math.min(this.currentFrame[1]+this.config.frameHandleThickness*2,this.previewWidth+this.config.frameHandleThickness);e+=" v "+this.previewHeight;e+=" H "+Math.max(this.currentFrame[0],this.config.frameHandleThickness);e+=" z";t.attr("d",e)},_renderFrame:function(){var t=this.svg.selectAll("path.frame").data([null]);t.enter().append("path").attr("stroke","white").attr("stroke-width","1px").attr("stroke-linejoin","round").attr("fill",this.config.frameColor).attr("fill-opacity",this.config.frameOpacity).attr("fill-rule","evenodd").classed("frame",true);var e="";e+=" M "+this.currentFrame[0]+" 0";e+=" H "+(this.currentFrame[1]+this.config.frameHandleThickness*2);e+=" V "+this.config.height;e+=" H "+this.currentFrame[0];e+=" z";e+=" M "+(this.currentFrame[0]+this.config.frameHandleThickness)+" "+this.config.frameTopThickness;e+=" H "+(this.currentFrame[1]+this.config.frameHandleThickness);e+=" v "+this.previewHeight;e+=" H "+(this.currentFrame[0]+this.config.frameHandleThickness);e+=" z";t.attr("d",e)},_renderGrippers:function(){var t=this.svg.selectAll("path.gripper").data([null]);t.enter().append("path").attr("stroke",this.config.gripperColor).classed("gripper",true);var e="";
726[.4,.6].forEach(function(t){e+=" M "+Math.round(this.currentFrame[0]+this.config.frameHandleThickness*t)+" "+Math.round(this.config.height*.3);e+=" V "+Math.round(this.config.height*.7);e+=" M "+Math.round(this.currentFrame[1]+this.config.frameHandleThickness*(1+t))+" "+Math.round(this.config.height*.3);e+=" V "+Math.round(this.config.height*.7)}.bind(this));t.attr("d",e)},_renderHandles:function(){var t=this.svg.selectAll("rect.left_handle").data([null]);t.enter().append("rect").attr("width",this.config.frameHandleThickness).attr("height",this.config.height).style("cursor","ew-resize").style("fill-opacity","0").classed("left_handle",true);t.attr("x",this.currentFrame[0]);var e=this.svg.selectAll("rect.right_handle").data([null]);e.enter().append("rect").attr("width",this.config.frameHandleThickness).attr("height",this.config.height).style("cursor","ew-resize").style("fill-opacity","0").classed("right_handle",true);e.attr("x",this.currentFrame[1]+this.config.frameHandleThickness)},_renderMiddle:function(){var t=this.svg.selectAll("rect.middle_handle").data([null]);t.enter().append("rect").attr("height",this.config.height).style("cursor","move").style("fill-opacity","0").classed("middle_handle",true);t.attr("width",Math.max(0,this.currentFrame[1]-this.currentFrame[0])).attr("x",this.currentFrame[0]+this.config.frameHandleThickness)},_registerMouseEvents:function(){var t=d3.select(this.element);var e={target:null,start:null,stop:null,left:false,right:false,rigid:false};var n=this;function i(t,i){e.stop=n._getClientXFromEvent(d3.event,e);var r=e.stop-e.start;var s=n.frameBeforeDrag.slice(0);var o=n.config.minimumFrameWidth;if(e.rigid){o=n.frameBeforeDrag[1]-n.frameBeforeDrag[0]}if(e.left){s[0]=Math.max(s[0]+r,0)}if(e.right){s[1]=Math.min(s[1]+r,n.previewWidth)}var a=s[1]-s[0];if(a<=o){if(e.left){s[0]=s[1]-o}if(e.right){s[1]=s[0]+o}if(s[0]<=0){s[1]-=s[0];s[0]=0}if(s[1]>=n.previewWidth){s[0]-=s[1]-n.previewWidth;s[1]=n.previewWidth}}n.graphs.forEach(function(t){var e=d3.scale.linear().interpolate(d3.interpolateRound).domain([0,n.previewWidth]).range(t.dataDomain());var i=[e(s[0]),e(s[1])];if(s[0]===0){i[0]=undefined}if(s[1]===n.previewWidth){i[1]=undefined}t.window.xMin=i[0];t.window.xMax=i[1];t.update()})}function r(){e.target=d3.event.target;e.start=n._getClientXFromEvent(d3.event,e);n.frameBeforeDrag=n.currentFrame.slice();d3.event.preventDefault?d3.event.preventDefault():d3.event.returnValue=false;d3.select(document).on("mousemove.rickshaw_range_slider_preview",i);d3.select(document).on("mouseup.rickshaw_range_slider_preview",l);d3.select(document).on("touchmove.rickshaw_range_slider_preview",i);d3.select(document).on("touchend.rickshaw_range_slider_preview",l);d3.select(document).on("touchcancel.rickshaw_range_slider_preview",l)}function s(t,n){e.left=true;r()}function o(t,n){e.right=true;r()}function a(t,n){e.left=true;e.right=true;e.rigid=true;r()}function l(t,i){d3.select(document).on("mousemove.rickshaw_range_slider_preview",null);d3.select(document).on("mouseup.rickshaw_range_slider_preview",null);d3.select(document).on("touchmove.rickshaw_range_slider_preview",null);d3.select(document).on("touchend.rickshaw_range_slider_preview",null);d3.select(document).on("touchcancel.rickshaw_range_slider_preview",null);delete n.frameBeforeDrag;e.left=false;e.right=false;e.rigid=false}t.select("rect.left_handle").on("mousedown",s);t.select("rect.right_handle").on("mousedown",o);t.select("rect.middle_handle").on("mousedown",a);t.select("rect.left_handle").on("touchstart",s);t.select("rect.right_handle").on("touchstart",o);t.select("rect.middle_handle").on("touchstart",a)},_getClientXFromEvent:function(t,e){switch(t.type){case"touchstart":case"touchmove":var n=t.changedTouches;var i=null;for(var r=0;r<n.length;r++){if(n[r].target===e.target){i=n[r];break}}return i!==null?i.clientX:undefined;default:return t.clientX}}});Rickshaw.namespace("Rickshaw.Graph.Renderer");Rickshaw.Graph.Renderer=Rickshaw.Class.create({initialize:function(t){this.graph=t.graph;this.tension=t.tension||this.tension;this.configure(t)},seriesPathFactory:function(){},seriesStrokeFactory:function(){},defaults:function(){return{tension:.8,strokeWidth:2,unstack:true,padding:{top:.01,right:0,bottom:.01,left:0},stroke:false,fill:false}},domain:function(t){var e=t||this.graph.stackedData||this.graph.stackData();var n=e[0][0];if(n===undefined){return{x:[null,null],y:[null,null]}}var i=n.x;var r=n.x;var s=n.y+n.y0;var o=n.y+n.y0;e.forEach(function(t){t.forEach(function(t){if(t.y==null)return;var e=t.y+t.y0;if(e<s)s=e;if(e>o)o=e});if(!t.length)return;if(t[0].x<i)i=t[0].x;if(t[t.length-1].x>r)r=t[t.length-1].x});i-=(r-i)*this.padding.left;r+=(r-i)*this.padding.right;s=this.graph.min==="auto"?s:this.graph.min||0;o=this.graph.max===undefined?o:this.graph.max;if(this.graph.min==="auto"||s<0){s-=(o-s)*this.padding.bottom}if(this.graph.max===undefined){o+=(o-s)*this.padding.top}return{x:[i,r],y:[s,o]}},render:function(t){t=t||{};var e=this.graph;var n=t.series||e.series;var i=t.vis||e.vis;i.selectAll("*").remove();var r=n.filter(function(t){return!t.disabled}).map(function(t){return t.stack});var s=i.selectAll("path.path").data(r).enter().append("svg:path").classed("path",true).attr("d",this.seriesPathFactory());if(this.stroke){var o=i.selectAll("path.stroke").data(r).enter().append("svg:path").classed("stroke",true).attr("d",this.seriesStrokeFactory())}var a=0;
726n.forEach(function(t){if(t.disabled)return;t.path=s[0][a];if(this.stroke)t.stroke=o[0][a];this._styleSeries(t);a++},this)},_styleSeries:function(t){var e=this.fill?t.color:"none";var n=this.stroke?t.color:"none";t.path.setAttribute("fill",e);t.path.setAttribute("stroke",n);t.path.setAttribute("stroke-width",this.strokeWidth);if(t.className){d3.select(t.path).classed(t.className,true)}if(t.className&&this.stroke){d3.select(t.stroke).classed(t.className,true)}},configure:function(t){t=t||{};Rickshaw.keys(this.defaults()).forEach(function(e){if(!t.hasOwnProperty(e)){this[e]=this[e]||this.graph[e]||this.defaults()[e];return}if(typeof this.defaults()[e]=="object"){Rickshaw.keys(this.defaults()[e]).forEach(function(n){this[e][n]=t[e][n]!==undefined?t[e][n]:this[e][n]!==undefined?this[e][n]:this.defaults()[e][n]},this)}else{this[e]=t[e]!==undefined?t[e]:this[e]!==undefined?this[e]:this.graph[e]!==undefined?this.graph[e]:this.defaults()[e]}},this)},setStrokeWidth:function(t){if(t!==undefined){this.strokeWidth=t}},setTension:function(t){if(t!==undefined){this.tension=t}}});Rickshaw.namespace("Rickshaw.Graph.Renderer.Line");Rickshaw.Graph.Renderer.Line=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"line",defaults:function($super){return Rickshaw.extend($super(),{unstack:true,fill:false,stroke:true})},seriesPathFactory:function(){var t=this.graph;var e=d3.svg.line().x(function(e){return t.x(e.x)}).y(function(e){return t.y(e.y)}).interpolate(this.graph.interpolation).tension(this.tension);e.defined&&e.defined(function(t){return t.y!==null});return e}});Rickshaw.namespace("Rickshaw.Graph.Renderer.Stack");Rickshaw.Graph.Renderer.Stack=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"stack",defaults:function($super){return Rickshaw.extend($super(),{fill:true,stroke:false,unstack:false})},seriesPathFactory:function(){var t=this.graph;var e=d3.svg.area().x(function(e){return t.x(e.x)}).y0(function(e){return t.y(e.y0)}).y1(function(e){return t.y(e.y+e.y0)}).interpolate(this.graph.interpolation).tension(this.tension);e.defined&&e.defined(function(t){return t.y!==null});return e}});Rickshaw.namespace("Rickshaw.Graph.Renderer.Bar");Rickshaw.Graph.Renderer.Bar=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"bar",defaults:function($super){var t=Rickshaw.extend($super(),{gapSize:.05,unstack:false});delete t.tension;return t},initialize:function($super,t){t=t||{};this.gapSize=t.gapSize||this.gapSize;$super(t)},domain:function($super){var t=$super();var e=this._frequentInterval(this.graph.stackedData.slice(-1).shift());t.x[1]+=Number(e.magnitude);return t},barWidth:function(t){var e=this._frequentInterval(t.stack);var n=this.graph.x(t.stack[0].x+e.magnitude*(1-this.gapSize));return n},render:function(t){t=t||{};var e=this.graph;var n=t.series||e.series;var i=t.vis||e.vis;i.selectAll("*").remove();var r=this.barWidth(n.active()[0]);var s=0;var o=n.filter(function(t){return!t.disabled}).length;var a=this.unstack?r/o:r;var l=function(t){var n=[1,0,0,t.y<0?-1:1,0,t.y<0?e.y.magnitude(Math.abs(t.y))*2:0];return"matrix("+n.join(",")+")"};n.forEach(function(t){if(t.disabled)return;var n=this.barWidth(t);var r=i.selectAll("path").data(t.stack.filter(function(t){return t.y!==null})).enter().append("svg:rect").attr("x",function(t){return e.x(t.x)+s}).attr("y",function(t){return e.y(t.y0+Math.abs(t.y))*(t.y<0?-1:1)}).attr("width",a).attr("height",function(t){return e.y.magnitude(Math.abs(t.y))}).attr("transform",l);Array.prototype.forEach.call(r[0],function(e){e.setAttribute("fill",t.color)});if(this.unstack)s+=a},this)},_frequentInterval:function(t){var e={};for(var n=0;n<t.length-1;n++){var i=t[n+1].x-t[n].x;e[i]=e[i]||0;e[i]++}var r={count:0,magnitude:1};Rickshaw.keys(e).forEach(function(t){if(r.count<e[t]){r={count:e[t],magnitude:t}}});return r}});Rickshaw.namespace("Rickshaw.Graph.Renderer.Area");Rickshaw.Graph.Renderer.Area=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"area",defaults:function($super){return Rickshaw.extend($super(),{unstack:false,fill:false,stroke:false})},seriesPathFactory:function(){var t=this.graph;var e=d3.svg.area().x(function(e){return t.x(e.x)}).y0(function(e){return t.y(e.y0)}).y1(function(e){return t.y(e.y+e.y0)}).interpolate(t.interpolation).tension(this.tension);e.defined&&e.defined(function(t){return t.y!==null});return e},seriesStrokeFactory:function(){var t=this.graph;var e=d3.svg.line().x(function(e){return t.x(e.x)}).y(function(e){return t.y(e.y+e.y0)}).interpolate(t.interpolation).tension(this.tension);e.defined&&e.defined(function(t){return t.y!==null});return e},render:function(t){t=t||{};var e=this.graph;var n=t.series||e.series;var i=t.vis||e.vis;i.selectAll("*").remove();var r=this.unstack?"append":"insert";var s=n.filter(function(t){return!t.disabled}).map(function(t){return t.stack});var o=i.selectAll("path").data(s).enter()[r]("svg:g","g");o.append("svg:path").attr("d",this.seriesPathFactory()).attr("class","area");if(this.stroke){o.append("svg:path").attr("d",this.seriesStrokeFactory()).attr("class","line")}var a=0;
726n.forEach(function(t){if(t.disabled)return;t.path=o[0][a++];this._styleSeries(t)},this)},_styleSeries:function(t){if(!t.path)return;d3.select(t.path).select(".area").attr("fill",t.color);if(this.stroke){d3.select(t.path).select(".line").attr("fill","none").attr("stroke",t.stroke||d3.interpolateRgb(t.color,"black")(.125)).attr("stroke-width",this.strokeWidth)}if(t.className){t.path.setAttribute("class",t.className)}}});Rickshaw.namespace("Rickshaw.Graph.Renderer.ScatterPlot");Rickshaw.Graph.Renderer.ScatterPlot=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"scatterplot",defaults:function($super){return Rickshaw.extend($super(),{unstack:true,fill:true,stroke:false,padding:{top:.01,right:.01,bottom:.01,left:.01},dotSize:4})},initialize:function($super,t){$super(t)},render:function(t){t=t||{};var e=this.graph;var n=t.series||e.series;var i=t.vis||e.vis;var r=this.dotSize;i.selectAll("*").remove();n.forEach(function(t){if(t.disabled)return;var n=i.selectAll("path").data(t.stack.filter(function(t){return t.y!==null})).enter().append("svg:circle").attr("cx",function(t){return e.x(t.x)}).attr("cy",function(t){return e.y(t.y)}).attr("r",function(t){return"r"in t?t.r:r});if(t.className){n.classed(t.className,true)}Array.prototype.forEach.call(n[0],function(e){e.setAttribute("fill",t.color)})},this)}});Rickshaw.namespace("Rickshaw.Graph.Renderer.Multi");Rickshaw.Graph.Renderer.Multi=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"multi",initialize:function($super,t){$super(t)},defaults:function($super){return Rickshaw.extend($super(),{unstack:true,fill:false,stroke:true})},configure:function($super,t){t=t||{};this.config=t;$super(t)},domain:function($super){this.graph.stackData();var t=[];var e=this._groups();this._stack(e);e.forEach(function(e){var n=e.series.filter(function(t){return!t.disabled}).map(function(t){return t.stack});if(!n.length)return;var i=$super(n);t.push(i)});var n=d3.min(t.map(function(t){return t.x[0]}));var i=d3.max(t.map(function(t){return t.x[1]}));var r=d3.min(t.map(function(t){return t.y[0]}));var s=d3.max(t.map(function(t){return t.y[1]}));return{x:[n,i],y:[r,s]}},_groups:function(){var t=this.graph;var e={};t.series.forEach(function(n){if(n.disabled)return;if(!e[n.renderer]){var i="http://www.w3.org/2000/svg";var r=document.createElementNS(i,"g");t.vis[0][0].appendChild(r);var s=t._renderers[n.renderer];var o={};var a=[this.defaults(),s.defaults(),this.config,this.graph];a.forEach(function(t){Rickshaw.extend(o,t)});s.configure(o);e[n.renderer]={renderer:s,series:[],vis:d3.select(r)}}e[n.renderer].series.push(n)},this);var n=[];Object.keys(e).forEach(function(t){var i=e[t];n.push(i)});return n},_stack:function(t){t.forEach(function(t){var e=t.series.filter(function(t){return!t.disabled});var n=e.map(function(t){return t.stack});if(!t.renderer.unstack){var i=d3.layout.stack();var r=Rickshaw.clone(i(n));e.forEach(function(t,e){t._stack=Rickshaw.clone(r[e])})}},this);return t},render:function(){this.graph.series.forEach(function(t){if(!t.renderer){throw new Error("Each series needs a renderer for graph 'multi' renderer")}});this.graph.vis.selectAll("*").remove();var t=this._groups();t=this._stack(t);t.forEach(function(t){var e=t.series.filter(function(t){return!t.disabled});e.active=function(){return e};t.renderer.render({series:e,vis:t.vis});e.forEach(function(t){t.stack=t._stack||t.stack||t.data})})}});Rickshaw.namespace("Rickshaw.Graph.Renderer.LinePlot");Rickshaw.Graph.Renderer.LinePlot=Rickshaw.Class.create(Rickshaw.Graph.Renderer,{name:"lineplot",defaults:function($super){return Rickshaw.extend($super(),{unstack:true,fill:false,stroke:true,padding:{top:.01,right:.01,bottom:.01,left:.01},dotSize:3,strokeWidth:2})},initialize:function($super,t){$super(t)},seriesPathFactory:function(){var t=this.graph;var e=d3.svg.line().x(function(e){return t.x(e.x)}).y(function(e){return t.y(e.y)}).interpolate(this.graph.interpolation).tension(this.tension);e.defined&&e.defined(function(t){return t.y!==null});return e},_renderDots:function(){var t=this.graph;t.series.forEach(function(e){if(e.disabled)return;var n=t.vis.selectAll("x").data(e.stack.filter(function(t){return t.y!==null})).enter().append("svg:circle").attr("cx",function(e){return t.x(e.x)}).attr("cy",function(e){return t.y(e.y)}).attr("r",function(e){return"r"in e?e.r:t.renderer.dotSize});Array.prototype.forEach.call(n[0],function(t){if(!t)return;t.setAttribute("data-color",e.color);t.setAttribute("fill","white");t.setAttribute("stroke",e.color);t.setAttribute("stroke-width",this.strokeWidth)}.bind(this))},this)},_renderLines:function(){var t=this.graph;var e=t.vis.selectAll("path").data(this.graph.stackedData).enter().append("svg:path").attr("d",this.seriesPathFactory());var n=0;
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727x solid #DDD").attr("width",this.width).attr("height",this.height).node();if(!this.canvas.getContext){this.container.html("<h3>Spectra Viewer requires Canvas, which is not supported by this browser.</h3>");throw"Canvas not supported"}t.pixel_ratio=t.get_pixel_ratio(this.canvas);t.scale_resolution(this.canvas,t.pixel_ratio);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.context=this.canvas.getContext("2d");if(!this.context.setLineDash){this.context.setLineDash=function(){}}this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale=new t.SVScale;this.scale.y.range([this.scaled_height,0]);this.scale.x.range(this.x_range());this.boundary=new t.SVScale;this.boundary.x.range(this.x_range());this.boundary.y.range([this.scaled_height,0]);this.boundary.clamp(true);if(this.min_boundaries){this.boundary.update(this.min_boundaries);this.scale.update(this.min_boundaries)}this._spectra=new t.SVSet;this.svg=this.sv_wrapper.append("svg").attr("width",this.width).attr("height",this.height).attr("class","svg-viewer").style("position","absolute").style("top",0).style("left",0);this.svg.style("cursor","all-scroll");this.drag_drop_load=t.default_for(n.drag_drop_load,true);this.initialize_zooming();this.initialize_dragging();i.legend=new t.SVLegend(i);d3v7.select(window).on("keydown",i.keydown).on("keyup",i.keyup);this.svg.on("mousemove",function(e){const n=d3v7.pointer(e);i.mx=i.scale.x.invert(t.pixel(n[0]));i.my=i.scale.y.invert(t.pixel(n[1]));i.highlight.hover();i.annotation.check_hover()});this.svg.on("mouseover",function(){i.contains_mouse=true;document.activeElement.blur()});this.svg.on("mouseout",function(){i.contains_mouse=false});this.handlers=new t.SVEvents;this.on=this.handlers.on;this.off=this.handlers.off;this.trigger=this.handlers.trigger;if(this.drag_drop_load){this.initialize_drag_drop_load()}this.selection=new t.SVSelection(this,t.default_for(n.select,{}));this.annotation=new t.SVAnnotation(i);this.zoombox=new t.ZoomBox(i);this.zoombox.visible=this.zoombox_show;this.highlight=new t.SVHighlighter(this,t.default_for(n.highlight,{}));this.menu=new t.SVMenu(i);this.help=new t.SVHelp(i);this.initial_settings();this.cluster_navigation_id=n.cluster_navigation_id;if(n.structure){this.structure=new t.SVStructure(n.structure)}if(n.assignment_table){this.assignment_table=new t.SVAssignments(i,n.assignment_table)}t._viewers.push(this);this.draw()};e.prototype.toString=function(){return"SpectraViewer"};Object.defineProperties(e.prototype,{drag_drop_load:{get:function(){return this._drag_drop_load},set:function(t){this._drag_drop_load=t;if(this._drag_drop_load){this.initialize_drag_drop_load()}else{this.svg.on(".dragndrop",null)}}},cluster_navigation_id:{get:function(){return this._cluster_navigation_id},set:function(e){this._cluster_navigation_id=e;if(this._cluster_navigation_id){this._cluster_navigation=new t.SVClusterNavigator(this,e)}else{if(this._cluster_navigation){this._cluster_navigation.detach();this._cluster_navigation=undefined}}}},structure_viewer_id:{get:function(){return this._structure_viewer_id},set:function(e){this._structure_viewer_id=e;if(this._structure_viewer_id){this._structure_viewer=new t.SVStructure(this,e)}else{if(this._structure_viewer){this._structure_viewer.detach();this._structure_viewer=undefined}}}}});e.prototype.x_range=function(e){e=e||this.width;const n=t.pixel(e-this.axis_y_gutter);return this.axis_x_reverse?[n,0]:[t.pixel(this.axis_y_gutter),t.pixel(e)]};e.prototype.resize=function(e,n,i){this.width=e||this.width;this.height=n||this.height;this.container.style("width",this.width+"px");d3v7.select(this.canvas).attr("width",this.width).attr("height",this.height);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale.y.range([this.scaled_height,0]);this.boundary.y.range([this.scaled_height,0]);this.scale.x.range(this.x_range());this.boundary.x.range(this.x_range());this.svg.attr("width",this.width).attr("height",this.height);t.scale_resolution(this.canvas,t.pixel_ratio);this.zoombox.update();this.legend.update();this.draw(i)};e.prototype.keyval=function(){return d3v7.select(".sv-key-down").html()};d3v7.selection.prototype.moveToFront=function(){return this.each(function(){this.parentNode.appendChild(this)})};e.prototype.keydown=function(t){if(t[this.zoom_brush_key]){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","crosshair")}d3v7.selectAll(".sv-key-down").html(t.keyCode)};e.prototype.keyup=function(t){if(t.keyCode==16){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","all-scroll")}d3v7.selectAll(".sv-key-down").html("")};e.prototype.pixels_to_units_of_axis=function(e,n){const i=this;return i.scale[e].invert(t.pixel(n))-i.scale[e].invert(0)};e.prototype.set_zoom_axis=function(t,e){if(t){if(this.zoom_axis!="y"){this.zoom_axis="y";this.set_zoom_cursor(t)}}else{if(this.zoom_axis!="x"){this.zoom_axis="x";this.set_zoom_cursor(t)}}};e.prototype.set_zoom_cursor=function(t){if(t){this.svg.style("cursor","ns-resize")}else{this.svg.style("cursor","ew-resize")}};e.prototype.scale_axis=function(e,n,i){const r=Math.abs(this.boundary[e].domain()[0]-this.boundary[e].domain()[1])/n;const s=e==="x"?0:1;let o=this.scale[e].invert(this.mouse(i,this.canvas)[s]);let a=(o-this.scale[e].domain()[0])/Math.abs(this.scale[e].domain()[0]-this.scale[e].domain()[1]);if(e=="y"){a=0;o=this.scale.y.domain()[0]}const l=[o-r*a,o+r*(1-a)];this.scale[e].domain(l);this.set_domain(e,l);if(this.debug){e=e.toUpperCase();this.debug_data.zoom["d"+e]=t.round(r);this.debug_data.zoom["v"+e]=t.round(o);this.debug_data.zoom["r"+e]=t.round(a)}};e.prototype.mouse=function(e,n){return d3v7.pointer(e,n).map(function(e){return t.pixel(e)})};e.prototype.translate_axis=function(e,n){const i=this.scale[e].range().map(function(e){return e-t.pixel(n)}).map(this.scale[e].invert);this.set_domain(e,i)};e.prototype.move_to=function(t,e){const n=this;e=e||500;if(this.axis_y_lock!==false){t[1][0]=this.axis_y_lock_value(t[1])}let i=[];let r=[];i=i.concat.apply(i,t);r=r.concat.apply(r,[n.scale.x.domain(),n.scale.y.domain()]);d3v7.select(this.canvas).transition().duration(e).tween("move",function(){const t=d3v7.interpolateArray(r,i);return function(e){n.set_domain("x",[t(e)[0],t(e)[1]]);n.set_domain("y",[t(e)[2],t(e)[3]]);n.fast_draw()}}).on("end",function(){n.full_draw()});n.zoom_axis=""};e.prototype.set_domain=function(e,n){const i=this.scale;const r=this.boundary;const s=Math.abs(r[e].domain()[1]-r[e].domain()[0]);let o=Math.abs(n[1]-n[0]);if(e=="y"&&this["axis_y_lock"]!==false){n[0]=this.axis_y_lock_value(n);n[1]=n[0]+o}let a=s/o;if(a>this.zoom_max){a=this.zoom_max;const i=o;o=s/a;const r=(n[0]+n[1])/2;n[0]=r-o/2;n[1]=n[0]+o;if(this.debug){this.debug_data.zoom["center-"+e]=t.round(r);this.debug_data.zoom["domain-diff-"+e]=t.round(o)}}
727if(a<1){a=1;o=s/a;n[0]=r[e].min();n[1]=r[e].max()}if(this["zoom_"+e]!=a){this["zoom_"+e]=a;this.trigger("zoom")}if(n[0]<r[e].domain()[0]){n[0]=r[e].domain()[0];n[1]=n[0]+o}else if(n[1]>r[e].domain()[1]){n[1]=r[e].domain()[1];n[0]=n[1]-o}this.scale[e].domain(n);this.trigger("domain-change")};e.prototype.axis_y_lock_value=function(t){if(this.axis_y_lock===true){return this.boundary.y.domain()[0]}else{const e=Math.abs(t[1]-t[0]);return 0-e*this.axis_y_lock}};e.prototype.zoom_out_completely=function(){this.move_to([this.boundary.x.domain(),this.boundary.y.domain()]);this.scale.x.domain(this.boundary.x.domain());this.scale.y.domain(this.boundary.y.domain());this.zoom_x=1;this.zoom_y=1};e.prototype.add_spectrum=function(e,n,i){const r=(new Date).getTime();let s=d3v7.max(this.spectra().map(function(t){return t.xy_data.length()}));if(!s)s=4e4;this.points_per_ppm=s/(this.boundary.x.domain()[1]-this.boundary.x.domain()[0]);e.tolerance=t.default_for(e.tolerance,this.simplify_tolerance);e.number_of_points=t.default_for(e.number_of_points,s);e.min_x=t.default_for(e.min_x,this.boundary.x.domain()[0]);e.max_x=t.default_for(e.max_x,this.boundary.x.domain()[1]);const o=this.all_spectra().map(function(t){return t.name});e.id=t.default_for(e.id,t.unique_id("Spectrum_",1,o));if(e.xy_line&&typeof e.xy_line.x=="string"){const t=e.xy_line.x;if(this.spectra(t)){e.xy_line.x=this.spectra(t).xy_data.x}else{throw new Error("There is no spectrum with the id provided by '"+e.id+"' xy_line.x:"+t)}}const a=e.toString()=="Spectrum"?e:new t.Spectrum(e,n,i);a._sv=this;this._spectra.push(a);this.boundary.update(a.xy_data);this.scale.update(a.xy_data);this.zoombox.update();this.legend.update();if(this.debug){this.debug_data.time[e.id+"~add"]=t.elapsed_time(r);this.debug_data.data[e.id+"~noise"]=a.noise;this.debug_data.data[e.id+"~points-all"]=a.xy_data.length();this.debug_data.data[e.id+"~points-simple"]=a.simple_xy_data.length()}this.draw()};e.prototype.add_bayesil_data=function(e){this.add_spectrum({id:"Spectrum",xy_line:e.spectrum_xy},undefined,e.meta);this.add_spectrum(t.convert_bayesil_data(e))};e.prototype.replace_bayesil_data=function(t,e){const n=this;const i=[n.scale.x.domain(),n.scale.y.domain()];const r=n.spectra().length>0;n.remove_all_spectra();n.add_bayesil_data(t);if(r&&e){n.set_domain("x",i[0]);n.set_domain("y",i[1])}n.draw()};e.prototype.add_nmrml_data=function(e,n="experimental"){const i={x:[],y:[]};if(!["experimental","predicted","simulated"].includes(n)){console.error("Spectra source not recognized")}else{const s=this;if(!window.X2JS){console.log("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const o=e.match(/<spectrumDataArray.*compressed="(true|false)"[^]*>(.*)<\/spectrumDataArray>/);if(o){const e=o[1]=="true";const n=o[2];const r=t.convert_base64_to_float64(n,e);let a=r[1];for(let t=0;t<r.length;t+=2){i.x.push(r[t]);i.y.push(r[t+1]);a=r[t+1]>a?r[t+1]:a}const l=1/a;i.y=i.y.map(function(t){return t*l});s.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:i})}else{console.log("No Spectrum Data Array found")}const a=e.match(/<atomAssignment[^]*<\/atomAssignment>/);let l;if(a){l=a[0]}else{console.log("Could not read nmrML. No <atomAssignment> tag found.");return}const c=l.match(/<structure[^]*<\/structure>/);if(s.structure&&c){const t=l.match(/<identifier.*name="(.*?)"/);if(t){s.structure.title=t[1]}s.structure.read_nmrml(c[0])}const u=e.match(/acquisitionNucleus.*name=\"(.*?)\"/);if(s.assignment_table&&u){const t=u[1];if(t.match(/hydrogen/i)||t.match(/1H/i)){s.assignment_table.nmr_nucleus="1H"}else if(t.match(/carbon/i)||t.match(/13C/i)){s.assignment_table.nmr_nucleus="13C"}}const h=new X2JS;const f=h.xml_str2json(l);let d;try{d=f.atomAssignment.chemicalCompound.identifierList.identifier._name}catch(r){console.error("nmrML contains no compound identifier");d="Compound"}const p={name:d};const m=[];let g=f.atomAssignment.atomAssignmentList.multiplet;if(g){g=Array.isArray(g)?g:[g];let t=g.map(t=>{let e=t.peakList.peak;e=Array.isArray(e)?e:[e];return e.map(t=>parseFloat(t._amplitude))});t=t.flat();let e=i.y[0];let n=i.y[0];
727i.y.forEach(function(t){e=Math.min(t,e);n=Math.max(t,n)});let r=d3v7.scaleLinear().domain([Math.min(0,Math.min(...t)),Math.max(...t)]).range([e,n]);g.forEach(function(t,e){const n=[];let i=t.peakList.peak;i=Array.isArray(i)?i:[i];i.forEach(t=>{let e=r(parseFloat(t._amplitude));t={center:parseFloat(t._center),amplitude:e};t.width=parseFloat(t._width)||.005;n.push(t)});m.push({peaks:n,meta:{nmrml_cluster_index:e}})})}p.clusters=m;let _="Simulated";let v=false;if(n==="predicted"){v=true;_="Predicted/Simulated"}else if(n==="simulated"){v=true}s.add_spectrum({id:"Simulated",name:_,display:{color:"blue",visible:v},compounds:[p]});if(s.structure&&g){const t=s.compounds(s.compounds().length).clusters();g.forEach((e,n)=>{const i=t.find(t=>{return t.meta.nmrml_cluster_index===n});if(e.atoms&&i){let t=[];const n=e.atoms._atomRefs;if(n&&n.match(/\w/)){t=n.trim().split(/\s+/)}t.forEach((e,n)=>t[n]=e.replace(/\D/g,""));i.atom_refs=t;i._atoms.merge(s.structure.atoms(t));switch(e.multiplicity._name.toLowerCase()){case"singlet feature":i.multiplet_type="s";break;case"doublet feature":i.multiplet_type="d";break;case"triplet feature":i.multiplet_type="t";break;case"quartet feature":i.multiplet_type="q";break;case"doublet of doublets feature":i.multiplet_type="dd";break;case"doublet of doublet of doublets feature":i.multiplet_type="ddd";break;case"doublet of doublet of doublets of doublets feature":i.multiplet_type="dddd";break;case"triplet of doublets feature":i.multiplet_type="td";break;case"doublet of triplets feature":i.multiplet_type="dt";break;case"triplet of triplets feature":i.multiplet_type="tt";break;case"doublet of quartets feature":i.multiplet_type="dq";break;case"doublet of doublet of triplets feature":i.multiplet_type="ddt";break;case"doublet of triplet of doublets feature":i.multiplet_type="dtd";break;case"triplet of doublets of doublets feature":i.multiplet_type="tdd";break;case"quintet feature":i.multiplet_type="quint";break;case"multiplet feature":i.multiplet_type="m";break}if(!i.hasOwnProperty("multiplet_type")){switch(e.multiplicity._accession){case"NMR:1000194":i.multiplet_type="s";break;case"NMR:1000184":i.multiplet_type="d";break;case"NMR:1000185":i.multiplet_type="t";break;case"NMR:1000186":i.multiplet_type="q";break;case"NMR:1000192":i.multiplet_type="dd";break;case"NMR:1000195":i.multiplet_type="qunit";break;case"NMR:1000196":i.multiplet_type="dt";break;case"NMR:1000197":i.multiplet_type="td";break;case"NMR:1400305":i.multiplet_type="m";break}}}})}if(n!=="experimental"){s.remove_spectra("Experimental")}s.spectra("Simulated").labels.update_peaks();s.trigger("adjust-end")}};e.prototype.add_spin_matrix_data=function(t){const e=this;const n=JSON.parse(t);const i=n.spectrum.spectrum_xy;const r=n.fit.spectrum_xy;e.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:i});e.add_spectrum({id:"Fit",name:"Fit",display:{color:"blue",visible:true},xy_line:r})};e.prototype.add_ir_data=function(t){const e=this;const n=new X2JS;const i=n.xml_str2json(t);if(i.hasOwnProperty("ms-ir")){const t=i["ms-ir"];if(t.hasOwnProperty("x-units"))e.axis_x_title=t["x-units"];if(t.hasOwnProperty("y-units"))e.axis_y_title=t["y-units"];const n=t["ms-ir-spectrum"].split("\n");const r={x:[],y:[]};for(let t of n){t=t.split(" ");r["x"].push(parseFloat(t[0]));r["y"].push(parseFloat(t[1]))}e.add_spectrum({id:"Experimental",name:"Experimental",display:{color:"black",visible:true},xy_line:r});e.full_draw()}else{console.error("Could not find IR data")}};e.prototype.remove_spectra=function(e){this._spectra=new t.SVSet(this._spectra.filter(function(t){return t.id!=e}));this.zoombox.remove_spectra(e);this.legend.update()};e.prototype.remove_all_spectra=function(){const t=this;t.selection.clear();this.all_spectra().forEach(function(e){t.remove_spectra(e.id)});t.reset_boundaries()};e.prototype.reset_boundaries=function(){const t=this;t.selection.clear() 728;t.boundary.initialized=false;t.scale.initialized=false;if(t.min_boundaries){t.boundary.update(t.min_boundaries);t.scale.update(t.min_boundaries)}else{t.boundary.update({x:[0,1],y:[0,1]});t.scale.update({x:[0,1],y:[0,1]})}};e.prototype.spectra=function(e){if(e)return this._spectra.get(e);const n=new t.SVSet(this._spectra.filter(function(t){return t.active}));return n.get(e)};e.prototype.all_spectra=function(t){return this._spectra.get(t)};e.prototype.compounds=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].compounds())}return n.get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;
728i++){n.merge(this._spectra[i].clusters())}return n.get(e)};e.prototype.peaks=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].peaks())}return n.get(e)};e.prototype.clear=function(){this.context.clearRect(0,0,t.pixel(this.width),t.pixel(this.height))};e.prototype.draw=function(e,n,i){const r=(new Date).getTime();const s=this;e=e||false;const o=this.context;const a=this.scale;this.clear();if(this.axis_y_grid)this.draw_grid_lines("y");if(this.axis_x_grid)this.draw_grid_lines("x");this.spectra().forEach(function(t){t.compounds().draw(o,a,e,n,i);t.clusters().draw(o,a,e,n,i);t.peaks().draw(o,a,e,true,i);t.draw(o,a,e,n,i)});this.selection.draw(o,a,e,n,i);this.zoombox.set_zoom_area(this.scale);this.annotation.draw();if(this.legend_show)this.legend.draw();this.draw_axes();this.selection.draw_bounds(o,a);this.selection.draw_indicators(o,a);if(this.debug){this.debug_data.time["draw"]=t.elapsed_time(r);this.draw_debug(this.legend.bottom())}};e.prototype.full_draw=function(){const t=this.scale.x.domain()[1]-this.scale.x.domain()[0];const e=this.points_per_ppm*t;const n=Math.abs(this.scale.x.range()[1]-this.scale.x.range()[0]);n/e>3?this.draw(false,true,1):this.draw(false,false)};e.prototype.calc_draw=function(){this.draw(false,true,1)};e.prototype.fast_calc_draw=function(){this.draw(false,true,2)};e.prototype.fast_draw=function(){this.zoom_x<10?this.draw(true):this.draw()};e.prototype.flash=function(e){this.context.font=this.adjust_font(1.5);this.context.textAlign="center";this.context.textBaseline="center";const n=t.pixel(this.width)/2;const i=t.pixel(this.height)/2;this.context.fillText(e,n,i)};e.prototype.draw_debug=function(e){if(!this.debug)return;const n=this.context;const i=this.debug_data;n.font=this.adjust_font(1,"monospace");n.fillStyle="black";const r=t.pixel(18);e=e||0;let s;if(this.axis_x_reverse){s=t.pixel(10);n.textAlign="left"}else{s=t.pixel(this.width-10);n.textAlign="right"}const o=this.debug===true?Object.keys(i):this.debug;let a=0;o.forEach(function(t){const o=Object.keys(i[t]);o.forEach(function(o){n.fillText(t+"|"+o+": "+i[t][o],s,e+r*a);a+=1})})};e.prototype.adjust_font=function(e,n,i){e=e||1;n=n||"Sans-Serif";i=i||"";let r=9/1400*e;let s=r*t.pixel(this.width)+t.pixel(5);return i+" "+s+"pt "+n};e.prototype.get_font_size=function(e){let n=9/1400*e;return n*t.pixel(this.width)+t.pixel(5)};e.prototype.draw_axes=function(){const e=this.scale;this.context.strokeStyle="black";this.context.lineWidth=1;this.context.setLineDash([1,0]);const n=t.pixel(this.axis_y_gutter);const i=t.pixel(this.axis_x_gutter);this.context.clearRect(e.x.range_min(),e.y.range_max(),e.x.range_max()+n,i);const r=this.axis_x_reverse?e.x.range_max():0;this.context.clearRect(r,e.y.range_min(),n,e.y.range_max()+i);this.context.fillStyle="black";if(this.axis_y_show)this.draw_y_axis();if(this.axis_x_show)this.draw_x_axis()};e.prototype.draw_x_axis=function(){const e=this;const n=t.pixel(this.tick_length);const i=this.context;const r=this.scale;i.beginPath();i.moveTo(r.x.range()[1],r.y.range()[0]);i.lineTo(r.x.range()[0],r.y.range()[0]);i.stroke();i.textAlign="center";i.textBaseline="top";i.font=this.font;r.x.ticks(this.x_tick_count).forEach(function(t){i.beginPath();i.moveTo(r.x(t),r.y.range()[0]);i.lineTo(r.x(t),r.y.range()[0]+n);i.stroke();const s=parseFloat(t.toFixed(e.tick_precision));i.fillText(s,r.x(t),r.y.range()[0]+n)});if(this.axis_x_title){i.font=this.axis_title_font;const t=r.x.range_diff()/2;const e=r.y.range()[0]+3*n;i.fillText(this.axis_x_title,t,e)}};e.prototype.draw_y_axis=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=this.axis_x_reverse?1:-1;const o=s*t.pixel(this.tick_length);const a=i.x.range()[0]+s*t.pixel(this.tick_length+r);n.beginPath();n.moveTo(i.x.range()[0],i.y.range()[1]);n.lineTo(i.x.range()[0],i.y.range()[0]);n.stroke();n.textAlign=this.axis_x_reverse?"left":"right";n.textBaseline="middle";n.font=this.font;let l=0;i.y.ticks(this.tick_count).forEach(function(t){n.beginPath();n.moveTo(i.x.range()[0],i.y(t));n.lineTo(i.x.range()[0]+o,i.y(t));n.stroke();n.fillText(e.axis_y_tick_format(t),a,i.y(t));if(e.axis_y_title){const e=Number(n.measureText(t).width);if(e>l)l=e}});if(this.axis_y_title){const e=t.pixel(4);const a=t.pixel(this.axis_y_gutter);const c=/(\d+\.?\d*)pt/.exec(this.axis_title_font)[1];const u=l+Math.abs(o)+Number(c)+e+r;if(u<a){n.save();n.textAlign="center";n.textBaseline="middle";n.font=this.axis_title_font;const t=i.x.range()[0]+(a-e-Number(c)/2)*s;const r=i.y.range()[0]/2;n.translate(t,r);n.rotate(s*Math.PI/2);n.translate(-t,-r);n.fillText(this.axis_y_title,t,r);
728n.restore()}}};e.prototype.draw_grid_lines=function(e){const n=this;const i=this.context;const r=i;const s=this.scale;s[e].ticks(this.tick_count).forEach(function(n){i.beginPath();if(e=="y"){i.moveTo(s.x.range()[0],s.y(n));i.lineTo(s.x.range()[1],s.y(n))}else if(e=="x"){i.moveTo(s.x(n),s.y.range()[0]);i.lineTo(s.x(n),s.y.range()[1])}i.strokeStyle="rgb(210,210,210)";i.lineWidth=t.pixel(.5);i.stroke()});this.context=r};e.prototype.draw_y_axis2=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=d3v7.min(i.x.range());const o=d3v7.max(i.x.range());const a=d3v7.min(i.y.range());const l=d3v7.max(i.y.range());let c,u,h;if(this.axis_y_left){c=s;u=c-t.pixel(this.tick_length+r);n.textAlign="right";h=-t.pixel(this.tick_length)}else{c=o;u=c+t.pixel(this.tick_length+r);n.textAlign="left";h=t.pixel(this.tick_length)}n.beginPath();n.moveTo(c,a);n.lineTo(c,l);n.stroke();n.textBaseline="middle";n.font=this.font;let f=0;i.y.ticks(this.tick_count).forEach(function(t){n.beginPath();n.moveTo(c,i.y(t));n.lineTo(c+h,i.y(t));n.stroke();n.fillText(t,u,i.y(t));if(e.axis_y_title){const e=Number(n.measureText(t).width);if(e>f)f=e}});if(this.axis_y_title){const e=t.pixel(4);const r=t.pixel(this.axis_y_gutter);const s=/(\d+)pt/.exec(this.axis_title_font)[1];const o=f+h+Number(s)+e;if(o<r){n.save();n.textAlign="center";n.textBaseline="hanging";n.font=this.axis_title_font;n.rotate(Math.PI/2);const t=-i.x.range()[0]-r+e;const s=i.y.range()[0]/2;n.fillText(this.axis_y_title,s,t);n.restore()}}};e.prototype.get_peak_domains=function(e,n){const i=.1;let r=e[0];let s=e[0];let o,a;for(let t=1;t<e.length;t++){const n=e[t];if(n.center<r.center)r=n;if(n.center>s.center)s=n}const l=t.xy_from_peaks(e,1e3,r.center,s.center);let c=d3v7.max(l.y);if(n){o=r.center-r.width/2;a=s.center+s.width/2}else{o=r.center-r.width;a=s.center+s.width;const t=(a-o)*i;o-=t;a+=t;c+=c*i}return[[o,a],[0,c]]};e.prototype.move_to_compound=function(t,e,n){const i=this.spectra(t);const r=i&&i.compounds(e);this.move_to_peaks(r.peaks(),n)};e.prototype.move_to_peaks=function(t,e,n){n=n||1;const i=this.get_peak_domains(t);i[1][1]=i[1][1]*n;const r=Math.abs(i[0][1]-i[0][0]);i[0][0]=i[0][0]-(r-r/n);i[0][1]=i[0][1]+(r-r/n);this.move_to(i,e)};e.prototype.set_domain_to_brush_extent=function(t,e){const n=this.domains_from_brush_extent(t,e);this.set_domain("x",n[0]);this.set_domain("y",n[1])};e.prototype.domains_from_brush_extent=function(t,e){const n=[t[0][0],t[1][0]];const i=[t[0][1],t[1][1]];return[n,i]};e.prototype.elements=function(e,n,i,r){const s=this;let o=i;if(!i){n=t.default_for(n,s);if(typeof n=="string"){n=s.spectra(n)}if(!n){o=new t.SVSet}else if(e=="peak"){o=n.peaks()}
728else if(e=="cluster"){o=n.clusters()}else if(e=="compound"){o=n.compounds()}else if(e=="spectrum"){o=n.spectra()}else{o=new t.SVSet}}if(r){o=new t.SVSet(o.filter(function(t){return t.visible}))}return o};e.prototype.find_element_mouse_over=function(e,n,i,r){const s=this;let o;elements=s.elements(e,n,i,r);elements.forEach(function(e){e.y_for_mouse_x=t.sum_of_peaks(s.mx,e.peaks())});elements.order_by("y_for_mouse_x");for(let t=0;t<elements.length;t++){if(s.my<=elements[t].y_for_mouse_x&&s.my>=0){o=elements[t];break}}return o};e.prototype.max_y_in_range=function(t,e){};e.prototype.image=function(e,n){e=e||this.width;n=n||this.height;const i=this.context;const r=this.zoombox.visible;const s=d3v7.select("body").append("canvas").attr("width",e).attr("height",n).node();t.scale_resolution(s,t.pixel_ratio);this.context=s.getContext("2d");const o=t.pixel(n-this.axis_x_gutter);this.scale.x.range(this.x_range(e));this.scale.y.range([o,0]);this.zoombox.visible=false;this.full_draw();image=s.toDataURL();this.scale.x.range(this.x_range());this.scale.y.range([this.scaled_height,0]);this.context=i;this.zoombox.visible=r;d3v7.select(s).remove();return image};e.prototype.initial_settings=function(){const e=this;this.settings=new t.SVSettings(this,{title:"JSV Settings",width:"250",height:"210",settings:[{label:"Grid lines [y-axis]",property:"axis_y_grid",type:"boolean"},{label:"Grid lines [x-axis]",property:"axis_x_grid",type:"boolean"},{label:"Show Zoombox",property:function(t){if(arguments.length==0)return e.zoombox.visible;e.zoombox.visible=t},type:"boolean"},{label:"Show Legend",property:"legend_show",type:"boolean"}]})};t.SpectraViewer=e})(JSpectraViewer);(function(t){const e=function(e,n){let i=this;this.container=d3v7.select(e);n=n||{};this.title=n.title;this.width=t.default_for(n.width,800);this.height=t.default_for(n.height,400);this.tick_count=t.default_for(n.tick_count,10);this.x_tick_count=t.default_for(n.x_tick_count,10);this.tick_length=t.default_for(n.tick_length,10);this.tick_precision=t.default_for(n.tick_precision,3);this.axis_x_tick_format=d3v7.format(t.default_for(n.axis_x_tick_format,"~g"));this.axis_y_tick_format=d3v7.format(t.default_for(n.axis_y_tick_format,"~g"));this.axis_x_title=t.default_for(n.axis_x_title,"ppm");this.axis_y_title=t.default_for(n.axis_y_title,"ppm");this.axis_y_show=t.default_for(n.axis_y_show,"ppm");this.axis_x_show=t.default_for(n.axis_x_show,true);this.axis_y_grid=t.default_for(n.axis_y_grid,false);this.axis_x_grid=t.default_for(n.axis_x_grid,false);this.axis_y_reverse=t.default_for(n.axis_y_reverse,false);this.axis_x_reverse=t.default_for(n.axis_x_reverse,true);this.axis_y_lock=t.default_for(n.axis_y_lock,false);this.min_boundaries=n.min_boundaries;this.zoom_max=t.default_for(n.zoom_max,25);this.zoom_min=t.default_for(n.zoom_min,.25);this.simplify_tolerance=n.simplify_tolerance;this.debug=t.default_for(n.debug,false);this.debug_data={time:{},data:{},drag:{},zoom:{},zbox:{}};const r=t.viewers().map(function(t){return t.id});this.id=t.default_for(n.id,t.unique_id("jsv-",1,r));this.axis_y_gutter=this.axis_y_show?t.default_for(n.axis_y_gutter,.14*this.width):0;this.axis_x_gutter=this.axis_x_show?t.default_for(n.axis_x_gutter,150):0;this.threshold=1;const s=this.title?"<h3>"+this.title+"</h3>":"";this.container.html(s).style("width",this.width+2+"px");this.sv_wrapper=this.container.append("div").attr("class","sv-wrapper").style("position","relative");this.container.append("div").attr("class","sv-key-down").style("display","none");this.canvas=this.sv_wrapper.append("canvas").attr("id",this.container.attr("id")).attr("class","spectra-viewer "+this["class"]).style("border","1px solid #DDD").attr("width",this.width).attr("height",this.height).node();if(!this.canvas.getContext){this.container.html("<h3>Spectra Viewer requires Canvas, which is not supported by this browser.</h3>");throw"Canvas not supported"}t.pixel_ratio=t.get_pixel_ratio(this.canvas);t.scale_resolution(this.canvas,t.pixel_ratio);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.context=this.canvas.getContext("2d");if(!this.context.setLineDash){this.context.setLineDash=function(){}}this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale=new t.SVScale;this.scale.y.range([0,this.scaled_height]);this.scale.x.range(this.x_range());this.boundary=new t.SVScale;this.boundary.x.range(this.x_range());this.boundary.y.range([this.scaled_height,0]);this.boundary.clamp(true);if(this.min_boundaries){this.boundary.update(this.min_boundaries);this.scale.update(this.min_boundaries)}this._spectra=new t.SVSet;this.shift_plot();this.svg=this.sv_wrapper.append("svg").attr("width",this.width).attr("height",this.height).attr("class","svg-viewer").style("position","absolute").style("top",0).style("left",0);this.svg.style("cursor","crosshair");this.svg.append("text").attr("id","crosshairs_label").attr("x","0.35em").attr("y","1em");this.svg.append("line").attr("id","crosshair_x").style("stroke","blue").style("stroke-width",1);this.svg.append("line").attr("id","crosshair_y").style("stroke","blue").style("stroke-width",1);this.svg.on("mousemove",function(e){const n=d3v7.pointer(e,this);i.mx=i.scale.x.invert(t.pixel(n[0]));i.my=i.scale.y.invert(t.pixel(n[1]));i.annotation.check_hover();d3v7.select("#crosshair_x").attr("x1",0).attr("y1",n[1]).attr("x2",i.width).attr("y2",n[1]);d3v7.select("#crosshair_y").attr("x1",n[0]).attr("y1",0).attr("x2",n[0]).attr("y2",i.height);if(i.debug)d3v7.select("#crosshairs_label").text("x: "+i.mx+" y: "+i.my)});this.zoom_rect={r:null,origin:null,translated_origin:null};i.svg.call(d3v7.drag().on("start",this.drag_zoom().start).on("drag",this.drag_zoom().drag).on("end",this.drag_zoom().end));this.initialize_zooming();d3v7.select(window).on("keydown",i.keydown).on("keyup",i.keyup);this.svg.on("mouseover",function(){i.contains_mouse=true;document.activeElement.blur()});this.svg.on("mouseout",function(){i.contains_mouse=false});this.handlers=new t.SVEvents;this.on=this.handlers.on;this.off=this.handlers.off;this.trigger=this.handlers.trigger;this.selection=new t.SVSelection(this,t.default_for(n.select,{}));this.annotation=new t.SVAnnotation(i);this.menu=new t.SVMenu(i);this.help=new t.SVHelp(i);this.cluster_navigation_id=n.cluster_navigation_id;if(n.structure){this.structure=new t.SVStructure(n.structure)}if(n.assignment_table){this.assignment_table=new t.SVAssignments2D(i,n.assignment_table)}t._viewers.push(this);this.draw()};e.prototype.toString=function(){return"SpectraViewer2D"};Object.defineProperties(e.prototype,{cluster_navigation_id:{get:function(){return this._cluster_navigation_id},set:function(e){this._cluster_navigation_id=e;if(this._cluster_navigation_id){this._cluster_navigation=new t.SVClusterNavigator(this,e)}else{if(this._cluster_navigation){this._cluster_navigation.detach();this._cluster_navigation=undefined}}}},structure_viewer_id:{get:function(){return this._structure_viewer_id},set:function(e){this._structure_viewer_id=e;if(this._structure_viewer_id){this._structure_viewer=new t.SVStructure(this,e)}else{if(this._structure_viewer){this._structure_viewer.detach();this._structure_viewer=undefined}}}}});e.prototype.x_range=function(e){e=e||this.width;const n=t.pixel(e-this.axis_y_gutter);return this.axis_x_reverse?[n,0]:[t.pixel(this.axis_y_gutter),t.pixel(e)]};e.prototype.resize=function(e,n,i){this.shift_plot(true);this.width=e||this.width;this.height=n||this.height;this.container.style("width",this.width+"px");d3v7.select(this.canvas).attr("width",this.width).attr("height",this.height);this.font=this.adjust_font();this.axis_title_font=this.adjust_font(1,undefined,"bold");this.scaled_height=t.pixel(this.height-this.axis_x_gutter);this.scaled_width=t.pixel(this.width-this.axis_y_gutter);this.scale.y.range([0,this.scaled_height]);this.boundary.y.range([this.scaled_height,0]);this.scale.x.range(this.x_range());this.boundary.x.range(this.x_range());this.svg.attr("width",this.width).attr("height",this.height);t.scale_resolution(this.canvas,t.pixel_ratio);this.shift_plot();this.draw()};e.prototype.keyval=function(){return d3v7.select(".sv-key-down").html()};d3v7.selection.prototype.moveToFront=function(){return this.each(function(){this.parentNode.appendChild(this)})};e.prototype.keydown=function(t){if(t[this.zoom_brush_key]){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","crosshair")}d3v7.selectAll(".sv-key-down").html(t.keyCode)};e.prototype.keyup=function(t){if(t.keyCode==16){d3v7.selectAll(".sv-wrapper .svg-viewer").style("cursor","all-scroll")}d3v7.selectAll(".sv-key-down").html("")};e.prototype.pixels_to_units_of_axis=function(e,n){const i=this;return i.scale[e].invert(t.pixel(n))-i.scale[e].invert(0)};e.prototype.set_zoom_axis=function(t){if(t){if(this.zoom_axis!="y"){this.zoom_axis="y";this.zoom_behavior.scale(this.zoom_y);this.set_zoom_cursor(t)}}else{if(this.zoom_axis!="x"){this.zoom_axis="x";this.zoom_behavior.scale(this.zoom_x);this.set_zoom_cursor(t)}}};e.prototype.set_zoom_cursor=function(t){if(t){this.svg.style("cursor","ns-resize")}else{this.svg.style("cursor","ew-resize")}};e.prototype.scale_axis=function(e,n){const i=Math.abs(this.boundary[e].domain()[0]-this.boundary[e].domain()[1])/n;const r=e==="x"?0:1;let s=this.scale[e].invert(this.mouse(this.canvas)[r]);let o=(s-this.scale[e].domain()[0])/Math.abs(this.scale[e].domain()[0]-this.scale[e].domain()[1]);if(e=="y"){o=0;s=this.scale.y.domain()[0]}const a=[s-i*o,s+i*(1-o)];this.scale[e].domain(a);this.set_domain(e,a);if(this.debug){e=e.toUpperCase();this.debug_data.zoom["d"+e]=t.round(i);this.debug_data.zoom["v"+e]=t.round(s);this.debug_data.zoom["r"+e]=t.round(o)}};e.prototype.mouse=function(e){return d3v7.mouse(e).map(function(e){return t.pixel(e)})};e.prototype.translate_axis=function(e,n){const i=this.scale[e].range().map(function(e){return e-t.pixel(n)}).map(this.scale[e].invert);this.set_domain(e,i)};e.prototype.shift_plot=function(t=false){if(t){this.context.translate(-this.x_range()[0]*.08,-this.scaled_height*.12)}
728else{this.context.translate(this.x_range()[0]*.08,this.scaled_height*.12)}};e.prototype.absolute_to_translated_context=function(t,e){let n=this.x_range()[0]*.08;let i=this.scaled_height*.12;let r=this.scale.x.range()[1];let s=this.scale.x.range()[0];let o=this.scale.y.range()[0];let a=this.scale.y.range()[1];t=t-n;e=e-i;t=Math.max(r,Math.min(s,t));e=Math.max(o,Math.min(a,e));return[this.scale.x.invert(t),this.scale.y.invert(e)]};e.prototype.move_to=function(t,e){const n=this;e=e||500;if(this.axis_y_lock!==false){t[1][0]=this.axis_y_lock_value(t[1])}let i=[];let r=[];i=i.concat.apply(i,t);r=r.concat.apply(r,[n.scale.x.domain(),n.scale.y.domain()]);d3v7.select(this.canvas).transition().duration(e).tween("move",function(){const t=d3v7.interpolateArray(r,i);return function(e){n.set_domain("x",[t(e)[0],t(e)[1]]);n.set_domain("y",[t(e)[2],t(e)[3]]);n.fast_draw()}}).on("end",function(){n.full_draw()});n.zoom_axis=""};e.prototype.set_domain=function(e,n){const i=this.scale;const r=this.boundary;const s=Math.abs(r[e].domain()[1]-r[e].domain()[0]);let o=Math.abs(n[1]-n[0]);if(e=="y"&&this["axis_y_lock"]!==false){n[0]=this.axis_y_lock_value(n);n[1]=n[0]+o}let a=s/o;if(a>this.zoom_max){a=this.zoom_max;const i=o;o=s/a;const r=(n[0]+n[1])/2;n[0]=r-o/2;n[1]=n[0]+o;if(this.debug){this.debug_data.zoom["center-"+e]=t.round(r);this.debug_data.zoom["domain-diff-"+e]=t.round(o)}}if(a<1){a=1;o=s/a;n[0]=r[e].min();n[1]=r[e].max()}if(this["zoom_"+e]!=a){this["zoom_"+e]=a;this.trigger("zoom")}if(n[0]<r[e].domain()[0]){n[0]=r[e].domain()[0];n[1]=n[0]+o}else if(n[1]>r[e].domain()[1]){n[1]=r[e].domain()[1];n[0]=n[1]-o}this.scale[e].domain(n);this.trigger("domain-change")};e.prototype.axis_y_lock_value=function(t){if(this.axis_y_lock===true){return this.boundary.y.domain()[0]}else{const e=Math.abs(t[1]-t[0]);return 0-e*this.axis_y_lock}};e.prototype.zoom_out_completely=function(){this.move_to([this.boundary.x.domain(),this.boundary.y.domain()]);this.scale.x.domain(this.boundary.x.domain());this.scale.y.domain(this.boundary.y.domain());this.zoom_x=1;this.zoom_y=1};e.prototype.add_spectrum_2d=function(e,n,i){let r=e.json_data.y.map(t=>e.json_data.y[0]-t);let s=Math.floor(Math.min(...e.json_data.x));let o=Math.ceil(Math.max(...e.json_data.x));let a=Math.floor(Math.min(...r));let l=Math.ceil(Math.max(...r));this.min_boundaries={x:[s,o],y:[a,l]};this.boundary.update(this.min_boundaries);this.scale.update(this.min_boundaries);e.min_x=t.default_for(e.min_x,this.boundary.x.domain()[0]);e.max_x=t.default_for(e.max_x,this.boundary.x.domain()[1]);const c=this.all_spectra().map(function(t){return t.name});e.id=t.default_for(e.id,t.unique_id("Spectrum2D_",1,c));const u=e.toString()=="Spectrum2D"?e:new t.Spectrum2D(e,n,i);u._sv=this;this._spectra.push(u);this.boundary.update(u.xyz_data);this.scale.update(u.xyz_data);this.draw()};e.prototype.add_nmrml_data=function(e){let n=this;if(!window.X2JS){console.error("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const i={x:/<spectrumDataArray2dDirectDimensionF2.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dDirectDimensionF2>/,y:/<spectrumDataArray2dIndirectDimensionF1.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dIndirectDimensionF1>/,z:/<spectrumDataArray2dIntensities.*compressed="(true|false)"[^]*>([^]+)<\/spectrumDataArray2dIntensities>/};let r={};Object.entries(i).forEach(function([n,i]){const s=e.match(i);if(s){let e=s[1]==="true";let i=s[2];r[n]=Array.from(t.convert_base64_to_float64(i,e))}else{console.error(`${n} data array not found`)}});if(Object.keys(i).every(t=>t in r)){n.add_spectrum_2d({json_data:r});const t=e.match(/<atomAssignment[^]*<\/atomAssignment>/);let i;if(t){i=t[0]}else{console.log("Could not read nmrML. No <atomAssignment> tag found.");return}const s=i.match(/<structure[^]*<\/structure>/);if(n.structure&&s){const t=i.match(/<identifier.*name="(.*?)"/);if(t){n.structure.title=t[1]}n.structure.read_nmrml(s[0])}const o=new X2JS;const a=o.xml_str2json(i);const l={name:a.atomAssignment.chemicalCompound.identifierList.identifier._name};const c=[];let u=a.atomAssignment.atomAssignmentList.multiplet;if(u){u=Array.isArray(u)?u:[u];u.forEach(function(t,e){const n=[t._dir_dim_center,t._indir_dim_center];c.push({peaks:n,meta:{nmrml_cluster_index:e}})});l.clusters=c;if(n.structure&&u){const t=n.compounds(n.compounds().length).cluster
728s();u.forEach((e,i)=>{const r=t.find(t=>{return t.meta.nmrml_cluster_index===i});if(e.atoms&&r){let t=[];let i=[];const s=e.atoms._dir_dim_atomRefs;const o=e.atoms._indir_dim_atomRefs;if(s&&s.match(/\w/)&&o&&o.match(/\w/)){t=s.trim().split(/\s+/);i=o.trim().split(/\s+/)}t.forEach((e,n)=>{t[n]=e.replace(/\D/g,"")});i.forEach((t,e)=>{i[e]=t.replace(/\D/g,"")});r.dir_dim_atom_refs=t;r.indir_dim_atom_refs=o;const a=t.concat(i.filter(e=>t.indexOf(e)<0));r._atoms.merge(n.structure.atoms(a));switch(e.multiplicity._name.toLowerCase()){case"singlet feature":r.multiplet_type="s";break;case"doublet feature":r.multiplet_type="d";break;case"triplet feature":r.multiplet_type="t";break;case"quartet feature":r.multiplet_type="q";break;case"doublet of doublets feature":r.multiplet_type="dd";break;case"doublet of doublet of doublets feature":r.multiplet_type="ddd";break;case"doublet of doublet of doublets of doublets feature":r.multiplet_type="dddd";break;case"triplet of doublets feature":r.multiplet_type="td";break;case"doublet of triplets feature":r.multiplet_type="dt";break;case"triplet of triplets feature":r.multiplet_type="tt";break;case"doublet of quartets feature":r.multiplet_type="dq";break;case"doublet of doublet of triplets feature":r.multiplet_type="ddt";break;case"doublet of triplet of doublets feature":r.multiplet_type="dtd";break;case"triplet of doublets of doublets feature":r.multiplet_type="tdd";break;case"quintet feature":r.multiplet_type="quint";break;case"multiplet feature":r.multiplet_type="m";break}if(!r.hasOwnProperty("multiplet_type")){switch(e.multiplicity._accession){case"NMR:1000194":r.multiplet_type="s";break;case"NMR:1000184":r.multiplet_type="d";break;case"NMR:1000185":r.multiplet_type="t";break;case"NMR:1000186":r.multiplet_type="q";break;case"NMR:1000192":r.multiplet_type="dd";break;case"NMR:1000195":r.multiplet_type="qunit";break;case"NMR:1000196":r.multiplet_type="dt";break;case"NMR:1000197":r.multiplet_type="td";break;case"NMR:1400305":r.multiplet_type="m";break}}}})}}n.trigger("adjust-end")}else{console.error("Could not read in Spectrum Data")}};e.prototype.remove_spectra=function(e){this._spectra=new t.SVSet(this._spectra.filter(function(t){return t.id!=e}))};e.prototype.remove_all_spectra=function(){const t=this;t.selection.clear();this.all_spectra().forEach(function(e){t.remove_spectra(e.id)});t.reset_boundaries()};e.prototype.reset_boundaries=function(){const t=this;t.selection.clear();t.boundary.initialized=false;t.scale.initialized=false;if(t.min_boundaries){t.boundary.update(t.min_boundaries);t.scale.update(t.min_boundaries)}else{t.boundary.update({x:[0,1],y:[0,1]});t.scale.update({x:[0,1],y:[0,1]})}};e.prototype.spectra=function(e){if(e)return this._spectra.get(e);const n=new t.SVSet(this._spectra.filter(function(t){return t.active}));return n.get(e)};e.prototype.all_spectra=function(t){return this._spectra.get(t)};e.prototype.compounds=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].compounds())}return n.get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._spectra.length;for(;i<r;i++){n.merge(this._spectra[i].clusters())}return n.get(e)};e.prototype.clear=function(e=false){if(e){this.context.clearRect(0,-1,t.pixel(this.width),t.pixel(this.height)+1);this.context.clearRect(-this.x_range()[0]*.08,t.pixel(this.height)-t.pixel(this.axis_x_gutter),t.pixel(this.width),t.pixel(this.height))}else{this.shift_plot(true);this.context.clearRect(0,0,t.pixel(this.width),t.pixel(this.height));this.shift_plot()}};e.prototype.draw=function(e,n,i){const r=(new Date).getTime();const s=this;e=e||false;const o=this.context;const a=this.scale;this.clear(e);if(this.axis_y_grid)this.draw_grid_lines("y");if(this.axis_x_grid)this.draw_grid_lines("x");this.spectra().forEach(function(t){t.draw(o,a,e,s.scaled_height,s.x_range(),s.threshold)});this.draw_axes();if(this.debug){this.debug_data.time["draw"]=t.elapsed_time(r)}};e.prototype.full_draw=function(){const t=this.scale.x.domain()[1]-this.scale.x.domain()[0];const e=this.points_per_ppm*t;const n=Math.abs(this.scale.x.range()[1]-this.scale.x.range()[0]);n/e>3?this.draw(false,true,1):this.draw(false,false)};e.prototype.calc_draw=function(){this.draw(false,true,1)};e.prototype.fast_calc_draw=function(){this.draw(false,true,2)};e.prototype.fast_draw=function(){this.draw(true)};e.prototype.flash=function(e){this.context.font=this.adjust_font(1.5);this.context.textAlign="center";this.context.textBaseline="center";const n=t.pixel(this.width)/2;const i=t.pixel(this.height)/2;this.context.fillText(e,n,i)};e.prototype.draw_debug=function(e){if(!this.debug)return;const n=this.context;const i=this.debug_data;n.font=this.adjust_font(1,"monospace");n.fillStyle="black";const r=t.pixel(18);e=e||0;let s;if(this.axis_x_reverse){s=t.pixel(10);n.textAlign="left"}else{s=t.pixel(this.width-10);n.textAlign="right"}const o=this.debug===true?Object.keys(i):this.debug;let a=0;o.forEach(function(t){const o=Object.keys(i[t]);o.forEach(function(o){n.fillText(t+"|"+o+": "+i[t][o],s,e+r*a);a+=1})})};e.prototype.adjust_font=function(e,n,i){e=e||1;n=n||"Sans-Serif";i=i||"";const r=9/1400*e;const s=r*t.pixel(this.width)+t.pixel(5);return i+" "+s+"pt "+n};e.prototype.draw_axes=function(){const e=this.scale;this.context.strokeStyle="black";this.context.lineWidth=1;this.context.setLineDash([1,0]);const n=t.pixel(this.axis_y_gutter);const i=t.pixel(this.axis_x_gutter);this.context.clearRect(e.x.range_min(),e.y.range_max(),e.x.range_max()+n,i);const r=this.axis_x_reverse?e.x.range_max():0;this.context.clearRect(r,e.y.range_min(),n,e.y.range_max()+i);this.context.fillStyle="black";if(this.axis_y_show)this.draw_y_axis();if(this.axis_x_show)this.draw_x_axis()};e.prototype.draw_x_axis=function(){const e=this;const n=t.pixel(this.tick_length);const i=this.context;const r=this.scale;i.beginPath();i.moveTo(r.x.range()[1],r.y.range()[1]);i.lineTo(r.x.range()[0],r.y.range()[1]);i.stroke();i.textAlign="center";i.textBaseline="top";i.font=this.font;r.x.ticks(this.x_tick_count).forEach(function(t){i.beginPath();i.moveTo(r.x(t),r.y.range()[1]);i.lineTo(r.x(t),r.y.range()[1]+n);i.stroke();let s=+t.toFixed(e.tick_precision);i.fillText(e.axis_x_tick_format(s),r.x(t),r.y.range()[1]+n)});if(this.axis_x_title){i.font=this.axis_title_font;const t=r.x.range_diff()/2;const e=r.y.range()[1]+3*n;i.fillText(this.axis_x_title,t,e)}};e.prototype.draw_y_axis=function(){const e=this;const n=this.context;const i=this.scale;const r=5;const s=this.axis_x_reverse?1:-1;const o=s*t.pixel(this.tick_length);const a=i.x.range()[0]+s*t.pixel(this.tick_length+r);n.beginPath();n.moveTo(i.x.range()[0],i.y.range()[1]);n.lineTo(i.x.range()[0],i.y.range()[0]);n.stroke();
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n(t){e.drag_event=true;t.sourceEvent.preventDefault();e.svg.style("cursor","all-scroll");e.trigger("drag-start")}function i(n){const i=(new Date).getTime();e.translate_axis("x",n.dx);e.translate_axis("y",n.dy);e.trigger("drag");e.fast_draw();if(e.debug){console.log("dragging");e.debug_data.time["drag"]=t.elapsed_time(i);e.debug_data.drag["dX"]=t.round(n.dx);e.debug_data.drag["dY"]=t.round(n.dy);e.debug_data.drag["zX"]=t.round(e.zoom_x);e.debug_data.drag["zY"]=t.round(e.zoom_y)}}function r(){e.drag_event=false;e.trigger("drag-end");e.full_draw()}};t.SpectraViewer.prototype.initialize_zooming=function(){const e=this;e.zoom_behavior=d3v7.zoom().scaleExtent([1,e.zoom_max]).on("start",n).on("zoom",i).on("end",r);e.svg.call(e.zoom_behavior).on("mousedown.zoom",null).on("dblclick.zoom",null);e.zoom_x=1;e.zoom_y=1;e.zoom_axis="x";e.zoom_y_key="altKey";function n(t){if(e.drag_event)return;const n=t.sourceEvent[e.zoom_y_key];e.set_zoom_axis(n,t);e.set_zoom_cursor(n);e.trigger("zoom-start")}function i(n){if(e.drag_event)return;const i=(new Date).getTime();e.set_zoom_axis(n.sourceEvent[e.zoom_y_key],n);e.scale_axis(e.zoom_axis,n.transform.k,n);e.fast_draw();if(e.debug){ 729console.log("zooming");e.debug_data.time["zoom"]=t.elapsed_time(i);e.debug_data.zoom["zX"]=t.round(e.zoom_x);e.debug_data.zoom["zY"]=t.round(e.zoom_y)}}function r(){if(e.drag_event)return;e.svg.style("cursor","all-scroll");e.trigger("zoom-end");e.full_draw()}};t.SpectraViewer.prototype.initialize_drag_drop_load=function(){const t=this;this.svg.on("dragleave.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw()});this.svg.on("dragover.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw();t.flash("Drop Bayesil JSON File...")});this.svg.on("drop.dragndrop",function(e){e.preventDefault();e.stopPropagation();t.draw();const n=e.dataTransfer.files[0];t.flash('Loading "'+n.name+'"...');const i=new FileReader;t.json_file=n;i.onload=function(){const e=i.result;try{const i=JSON.parse(e);t.replace_bayesil_data(i,true);t.trigger("drop")}catch(n){t.draw();t.flash("Could not read file: "+n.message)}};i.readAsText(n)})}})(JSpectraViewer);(function(t){t.SpectraViewer2D.prototype.initialize_zooming=function(){const t=this;t.zoom_behavior=d3v7.zoom().scaleExtent([t.zoom_min,t.zoom_max]).on("zoom",e);t.svg.call(t.zoom_behavior).on("dblclick.zoom",null);function e(e){if(t.drag_event)return;t.threshold=e.transform.k;t.fast_draw()}};t.SpectraViewer2D.prototype.drag_zoom=function(){const e=this;const n=e.svg;const i=i=>{e.zoom_rect.origin=[i.x,i.y];e.zoom_rect.translated_origin=e.absolute_to_translated_context(t.pixel(e.zoom_rect.origin[0]),t.pixel(e.zoom_rect.origin[1]));e.zoom_rect.r=n.append("rect").attr("id","zoom-rect").attr("style","fill:blue;fill-opacity:0.1;").attr("x",e.zoom_rect.origin[0]).attr("y",e.zoom_rect.origin[1]).attr("width",1).attr("height",1)};const r=t=>{e.zoom_rect.r.attr("x",Math.min(e.zoom_rect.origin[0],t.x)).attr("y",Math.min(e.zoom_rect.origin[1],t.y)).attr("width",Math.abs(t.x-e.zoom_rect.origin[0])).attr("height",Math.abs(t.y-e.zoom_rect.origin[1]))};const s=n=>{const i=(t,e)=>{return t-e};const r=e.absolute_to_translated_context(t.pixel(n.x),t.pixel(n.y));if(n.x!==e.zoom_rect.origin[0]&&n.y!==e.zoom_rect.origin[1]){e.move_to([[e.zoom_rect.translated_origin[0],r[0]].sort(i),[e.zoom_rect.translated_origin[1],r[1]].sort(i)],500)}e.zoom_rect.r.remove()};return{start:i,drag:r,end:s}}})(JSpectraViewer);(function(t){const e=function(){const t=d3v7.scaleLinear();t.min=function(e){if(!arguments.length)return t.domain()[0];if(e>t.max()){throw new Error("x must be less than domain max: "+t.max())}t.domain([e,t.max()]);return t};t.max=function(e){if(!arguments.length)return t.domain()[1];if(e<t.min()){throw new Error("x must be greater than domain min: "+t.min())}t.domain([t.min(),e]);return t};t.diff=function(){return Math.abs(t.max()-t.min())};t.range_diff=function(){return Math.abs(t.range()[1]-t.range()[0])};t.range_min=function(){return d3v7.min(t.range())};t.range_max=function(){return d3v7.max(t.range())};return t};const n=function(){this.x=t.LinearScale();this.y=t.LinearScale();this.initialized=false};n.prototype.clamp=function(t){this.x.clamp(t);this.y.clamp(t)};n.prototype.update=function(t){const e=this.initialized?this.x.max():null;const n=this.initialized?this.y.max():null;let i=Number.NEGATIVE_INFINITY;let r=Number.POSITIVE_INFINITY;let s=Number.NEGATIVE_INFINITY;let o=Number.POSITIVE_INFINITY;t.x.concat(e).forEach(t=>{if(t>i)i=t});t.x.forEach(t=>{if(t<r)r=t});t.y.concat(e).forEach(t=>{if(t>s)s=t});
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r=function(t){const e=t.match(/\.(.*)/);return e?e[1]:undefined};t.SVEvents=e})(JSpectraViewer);(function(t){const e=function(){if(arguments.length==1&&Array.isArray(arguments[0])){this.push.apply(this,arguments[0])}else if(arguments.length>0){this.push.apply(this,arguments)}};e.prototype=Object.create(Array.prototype);e.prototype.toString=function(){return"SVSet"};e.prototype.merge=function(t){this.push.apply(this,t);return this};e.prototype.attr=function(t){if(arguments.length==1&&typeof t=="object"){const e=Object.keys(t);const n=e.length;let i=0;const r=this.length;for(;i<r;i++){for(let r=0;r<n;r++){this[i][e[r]]=t[e[r]]}}}else if(arguments.length==2){let t=0;const e=this.length;for(;t<e;t++){this[t][arguments[0]]=arguments[1]}}else if(t!=undefined){throw new Error("attr(): must be 2 arguments or a single object")}return this};e.prototype.draw=function(t,e,n,i,r,s=null){let o=0;const a=this.length;for(;o<a;o++){if(s)this[o].draw(t,e,n,i,r);else this[o].draw(t,e,n,i,r,s)}return 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e=function(t){if(t===undefined){t={x:[],y:[]}}if(t instanceof Array){t=n(t)}if(t.x.length!=t.y.length){throw new Error("x and y must be the same length!")}if(t.yi&&t.yi.length!=t.x.length){throw new Error("If present yi must be the same length as x and y!")}const e=t.x[0]>t.x[t.x.length-1];this.x=e?t.x.reverse():t.x;this.y=e?t.y.reverse():t.y;this.yi=t.yi&&e?t.yi.reverse():t.yi};e.prototype.length=function(){return this.x.length};e.prototype.asArray=function(){const t=[];let e;let n=0;const i=this.length();for(;n<i;n++){e={x:this.x[n],y:this.y[n]};if(this.yi){e.yi=this.yi[n]}t.push(e)}return t};e.prototype.index_of=function(e,n){return t.index_of_value(this.x,e,n)};e.prototype.simplify=function(n,i){return new e(t.simplify(this,n,i))};const n=function(t){const e=[],n=[],i=[];let r=0;const s=t.length;for(;r<s;r++){e.push(t[r].x);n.push(t[r].y);if(t[0].yi){i.push(t[r].yi)}}const o={x:e,y:n};if(t[0]&&t[0].yi){o.yi=i}return o};t.SVData=e})(JSpectraViewer);(function(t){const e=function(t){if(t===undefined){t={x:[],y:[],z:[]}}if(t instanceof Array){t=n(t)}if(t.z.length!=t.x.length*t.y.length){throw new Error("z length must be divisible by x and y length!")}this.x=t.x;this.y=t.y;this.z=t.z};e.prototype.length=function(){return this.x.length};e.prototype.asArray=function(){let t=[];let e;for(let n=0,i=this.length();n<i;n++){e={x:this.x[n],y:this.y[n],z:this.z[n]};t.push(e)}return t};let n=function(t){let e=[],n=[],i=[];let r=0;const s=t.length;for(;r<s;r++){e.push(t[r].x);n.push(t[r].y);i.push(t[r].z)}let o={x:e,y:n,z:i};return o};t.SVData2D=e})(JSpectraViewer);(function(t){path_id=0;const e=function(e,n){e=e||{};this.meta=n||{};this.lineWidth=t.default_for(e.lineWidth,1);this.color=t.default_for(e.color,"black");this.visible=t.default_for(e.visible,true);this.dash=t.default_for(e.dash,[]);this.fill=e.fill;this.path_id()};e.prototype.peaks=function(){return new t.SVSet};e.prototype.path_id=function(){const t=n();this.path_id=function(){return t};return t};const n=function(){return"path-id-"+path_id++};e.prototype.attr=function(t){const e=Object.keys(t);for(let n=0,i=e.length;n<i;n++){this[e[n]]=t[e[n]]}return this};e.prototype.display_settings=function(t){if(t){return this.attr(t)}else{return{color:this.color,fill:this.fill,lineWidth:this.lineWidth,visible:this.visible,dash:this.dash}}};e.prototype.data_for_draw=function(e,n,i,r){let s;const o=this.xy_data!=undefined;if(this.phasing&&o&&this.xy_data.yi!=undefined){let t;const e=[];const n=this.xy_data.length();for(let i=0;i<n;i++){t=Math.PI*(1*this.ph0+1*(n-i-1)*this.ph1/n)/180;e.push(Math.cos(t)*this.xy_data.y[i]+Math.sin(t)*this.xy_data.yi[i])}s={x:this.xy_data.x,y:e}}else if(i&&this.peaks().length>0||!o&&this.peaks().length>0){if(!r)r=1;const n=e.x.range_diff()/t.pixel_ratio/r;const i=r>1;s=t.xy_from_peaks(this.peaks(),n,e.x.domain()[0],e.x.domain()[1],i)}else if(o){s=n?this.simple_xy_data:this.xy_data}else{s={x:[0],y:[0]};console.error("No data or Peaks for SVPath:")}return s};e.prototype.draw=function(e,n,i,r,s){if(this.visible){const o=this.data_for_draw(n,i,r,s);const a=t.index_of_value(o.x,n.x.domain()[0],false);const l=t.index_of_value(o.x,n.x.domain()[1],true);e.translate(.5,.5);e.beginPath();const c=this.fill?n.y(0):n.y(o.y[a]);e.moveTo(n.x(o.x[a]),c);for(let t=a;t<=l;t++){e.lineTo(n.x(o.x[t]),n.y(o.y[t]))}if(this.fill){e.lineTo(n.x(o.x[l]),n.y(0));e.fillStyle=this.fill;e.fill()}e.lineWidth=t.default_for(this.lineWidth,1);e.strokeStyle=this.color;e.setLineDash(this.dash);e.stroke();e.translate(-.5,-.5)}};t.SVPath=e})(JSpectraViewer);(function(t){plot_id=0;const e=function(e,n){e=e||{};this.meta=n||{};this.dotSize=t.default_for(e.dotSize,1);this.color=t.default_for(e.color,"black");this.visible=t.default_for(e.visible,true);this.plot_id()};e.prototype.plot_id=function(){let t=n();this.path_id=function(){return t};return t};const n=function(){return"plot-id-"+plot_id++};e.prototype.attr=function(t){const e=Object.keys(t);let n=0;const i=e.length;for(;n<i;n++){this[e[n]]=t[e[n]]}return this};e.prototype.display_settings=function(t){if(t){return this.attr(t)}else{return{color:this.color,fill:this.fill,lineWidth:this.lineWidth,visible:this.visible,dash:this.dash}}};e.prototype.sum=function(t){return t.reduce((t,e)=>t+e)};e.prototype.mean=function(t){return this.sum(t)/t.length};e.prototype.stddev=function(t){const e=this.mean(t);const n=function(t,n){return t+(n-e)*(n-e)};return Math.sqrt(t.reduce(n,0)/t.length)};e.prototype.find_peaks=function(t,e){const n=Array(t.length).fill(0);let i=this.stddev(t);let r=this.mean(t);for(let s=0;s<t.length;s++){if(t[s]>r+i*e){n[s]=1}else if(t[s]<r-i*e){n[s]=-1}}return n};e.prototype.data_for_draw=function(){let t;const e=this.xyz_data!=undefined;if(e){return{x:this.xyz_data.x,y:this.xyz_data.y,z:this.xyz_data.z}}else{t={x:[0],y:[0],z:[0]};console.log("No data or Peaks for SVPath:");console.log(this);return t}};e.prototype.draw=function(e,n,i,r,s,o){let a=t=>{t.forEach(t=>{if(t.coordinates.length==0)return;
729t.coordinates.forEach(t=>{e.beginPath();t.forEach(t=>{t.forEach(t=>{const i=n.x.range();const r=n.y.range();let s=n.x(this.original_scale.x.invert(t[0]));let o=n.y(this.original_scale.y.invert(t[1]));if(s<i[1]){s=i[1]}else if(s>i[0]){s=i[0]}if(o<r[0]){o=r[0]}else if(o>r[1]){o=r[1]}e.lineTo(s,o)})});e.stroke()})})};if(this.visible){let l=this;let c=this.data_for_draw();if(!this.original_scale){this.original_scale=new t.SVScale;this.original_scale.x.domain(n.x.domain());this.original_scale.y.domain(n.y.domain());this.original_scale.x.range(n.x.range());this.original_scale.y.range(n.y.range())}if(!this.old_threshold||this.old_threshold!=o){this.old_threshold=o;const t=l.find_peaks(c.z,o);let e=[];let i=[];for(let r=0;r<c.y.length;r++){for(let s=0;s<c.x.length;s++){if(t[c.x.length*r+s]===-1){i.push([n.x(c.x[s]),n.y(c.y[r])])}else if(t[c.x.length*r+s]===1){e.push([this.original_scale.x(c.x[s]),this.original_scale.y(c.y[r])])}}}this.posContours=d3v7.contourDensity().size([c.x.length*3,c.y.length*3]).bandwidth(10)(e);this.negContours=d3v7.contourDensity().size([c.x.length*3,c.y.length*3]).bandwidth(10)(i)}e.strokeStyle="blue";a(this.posContours);e.strokeStyle="red";a(this.negContours);if(!i){let t={};let i={};for(let e=0;e<c.y.length;e++){let n=c.y[e];for(let r=0;r<c.x.length;r++){let s=c.x[r];let o=c.z[c.x.length*e+r];if(t[s]===undefined){t[s]=0}if(i[n]===undefined){i[n]=0}t[s]+=o;i[n]+=o}}let o=Object.values(i);let a=Object.values(t);let l=Math.max(...a);let u=Math.min(...a);let h=Math.max(...o);let f=Math.min(...o);const d=l-u;const p=h-f;Object.keys(t).map(function(e,n){t[e]=(t[e]-u)/d});Object.keys(i).map(function(t,e){i[t]=(i[t]-f)/p});let m=d3v7.scaleLinear().domain([u,l]).range([0,-(r*.12)+10]);let g=d3v7.scaleLinear().domain([f,h]).range([0,-(s[0]*.08)+10]);e.lineWidth=1;e.strokeStyle="blue";e.beginPath();for(let t=0;t<=c.x.length;t++){const i=n.x(c.x[t]);const r=n.x.range();if(i>=r[1]&&i<=r[0]){e.lineTo(i,m(a[t]))}}e.stroke();e.beginPath();for(let t=0;t<=c.y.length;t++){const i=n.y(c.y[t]);const r=n.y.range();if(i>=r[0]&&i<=r[1]){e.lineTo(g(o[t]),n.y(c.y[t]))}}e.stroke()}}};t.SVDot=e})(JSpectraViewer);(function(t){function e(t,e,n,i){this.x=t;this.y=e;this.width=n;this.height=i}e.prototype.contains_pt=function(t,e){return t>=this.x&&t<=this.x+this.width&&e>=this.y&&e<=this.y+this.height};function n(e){const n=this;this.sv=e;this.max_label_length=0;this.margin_top=t.pixel(5);this.margin_side=t.pixel(10);this.key_label_space=t.pixel(5);this.key_width=t.pixel(10);this.line_width=t.pixel(3);this.text_height=t.pixel(18);this.items=[];e.svg.on("click.legend",function(t){let i=e.mouse(t,e.canvas);for(let t=0,r=n.items.length;t<r;t++){let r=n.items[t];if(r.rect.contains_pt(i[0],i[1])&&e.legend_show){r.path.visible=!r.path.visible;e.full_draw()}}})}n.prototype.bottom=function(){const e=(this.sv.zoombox.visible?t.pixel(this.sv.zoombox.height):0)+this.margin_top;return this.sv.legend_show?this.offset_y:e};n.prototype.update=function(){const n=this.sv;const i=n.context;this.offset_y=(n.zoombox.visible?t.pixel(n.zoombox.height):0)+this.margin_top;const r=this.margin_side;i.font=n.adjust_font(1,"monospace");this.items=[];for(let s=0;s<n.spectra().length;s++){const o=n.spectra()[s];const a=new t.SVLegendItem(this);const l=new e;l.y=this.offset_y;l.height=this.text_height;l.width=this.key_width+this.key_label_space+i.measureText(o.name).width;l.x=n.axis_x_reverse?r:t.pixel(n.width)-r-l.width;a.rect=l;a.path=o;this.offset_y+=this.text_height;this.items.push(a);this.max_label_length=Math.max(a.path.name.length,this.max_label_length)}};n.prototype.draw=function(){const t=this.sv;const e=t.context;e.save();e.textAlign="left";e.textBaseline="middle";e.font=t.adjust_font(1,"monospace");for(let t=0;t<this.items.length;t++){this.items[t].draw(this.max_label_length)}e.restore()};function i(t,e,n){this.legend=t;this.sv=t.sv;this.path=e;this.rect=n}i.prototype.key_x1=function(){return this.sv.axis_x_reverse?this.rect.x:this.rect.x+this.rect.width-this.legend.key_width};i.prototype.key_x2=function(){return this.key_x1()+this.legend.key_width};i.prototype.key_y=function(){return this.rect.y+this.rect.height/2};i.prototype.label_x=function(){return this.sv.axis_x_reverse?this.rect.x+this.legend.key_width+this.legend.key_label_space:this.rect.x};i.prototype.draw=function(t){let e=this.rect;this.sv.context.clearRect(e.x,e.y,e.width,e.height);if(this.path.visible)this.draw_key();this.draw_label(t)};i.prototype.draw_key=function(){let t=this.sv.context;t.beginPath();t.moveTo(this.key_x1(),this.key_y());t.lineTo(this.key_x2(),this.key_y());t.lineWidth=this.legend.line_width;t.strokeStyle=this.path.color;t.setLineDash(this.path.dash);t.stroke()};i.prototype.draw_label=function(t){this.sv.context.fillStyle=this.path.visible?"black":"#999";let e=this.path.visible?"\u2612":"\u2610";let n=`${this.path.name.padEnd(t)} ${e}`;this.sv.context.fillText(n,this.label_x(),this.key_y())};t.SVLegend=n;t.SVLegendItem=i})(JSpectraViewer);(function(t){function e(e,n={}){const i=this;this.sv=e;this.highlighted_label;this.point_gap=t.default_for(n.point_gap,t.pixel(12));this.label_color=t.default_for(n.label_color,"#5555DD");this.visible=t.default_for(n.visible,true);this.hover=t.default_for(n.hover,true);this.labels=new t.SVSet;this.visible_labels=new t.SVSet;e.svg.on("mousedown.label",function(){if(i.highlighted_label&&i.hover){e.trigger("label-click",i.highlighted_label)}})}e.prototype.get=function(t){return this.labels.get(t)};e.prototype.update=function(){const e=this.sv;const n=e.labels?e.labels.get():new t.SVSet;
729e.spectra().forEach(function(t){if(t.visible&&t.active&&t.labels){n.push.apply(n,t.labels.get())}});this.labels=n;let i=this.reduce_labels_by_view();i=this.reduce_labels_by_height(i);i=this.adjust_labels(i);this.visible_labels=i};e.prototype.rect_for_label=function(e){const n=this.sv;let i,r,o;const a=n.scale.x(e.x);const l=n.scale.y(e.y);const c=n.context.measureText(e.text).width;const u=t.pixel(e.font_size);if(e.vertical){r=a-u/2;o=l-c-this.point_gap;i=new s(r,o,u,c)}else{r=a-c/2;o=l-u-this.point_gap;i=new s(r,o,u,c)}return i};e.prototype.reduce_labels_by_view=function(t){if(!t)t=this.labels;const e=this.sv.scale;return t.filter(function(t){return t.x>e.x.min()&&t.x<e.x.max()&&t.y<e.y.max()})};e.prototype.reduce_labels_by_height=function(e){if(!e)e=this.labels;const n=this.sv.scale;const i=6;const r=new t.SVSet;let s=0;const o=e.length;for(;s<o;s++){label=e[s];label.font_size=i;label.rect=this.rect_for_label(label);label.adjust_rect(r);if(label.stack_level<3){r.push(label)}}return r};e.prototype.adjust_labels=function(e){const n=this.sv;let i,r,s,o;const a=1;const l=t.pixel(2);const c=t.pixel(12);const u=13;const h=8;const f=u-h;let d=u;let p=h;const m=n.scale;const g=n.context;g.save();let _=true;while(_){_=false;adjusted_labels=new t.SVSet;g.font=t.pixel(d)+"px Arial";p=h+Math.round(f*n.zoom_x/n.zoom_max);let i=0;const s=e.length;for(;i<s;i++){r=e[i];r.font_size=d;r.rect=this.rect_for_label(r);r.adjust_rect(adjusted_labels);if(r.stack_level>a&&d>p){_=true;d-=1;break}else{adjusted_labels.push(r)}}}return e};e.prototype.label_over_spectra=function(e,n,i){const r=this.sv;const s=[];for(let t=0,n=e.rect.width;t<n;t++){s.push(r.scale.x.invert(e.rect.x+t))}const o=r.scale.y.invert(e.rect.bottom());let a=false;for(let e=0,i=s.length;e<i;e++){if(o<t.sum_of_peaks(s[e],n)){a=true;break}}return a};e.prototype.draw=function(){if(!this.visible){return}const e=this.sv;const n=e.context;const i=e.scale;let r;const s=t.pixel(2);n.save();this.update();const o=this.visible_labels;for(let e=0,a=o.length;e<a;e++){r=o[e];const a=i.x(r.x);const l=i.y(r.y)-s;const c=r.rect.bottom()+s;n.beginPath();n.moveTo(a,l);n.lineTo(a,c);n.strokeStyle="#999999";n.lineWidth=t.pixel(.5);n.stroke()}n.fillStyle=this.label_color;for(let t=0,e=o.length;t<e;t++){r=o[t];if(r===this.highlighted_label){n.font="bold "+n.font}else{n.font=n.font.replace("bold ","")}n.textBaseline="top";if(r.vertical){n.textAlign="right";n.save();n.translate(r.rect.x,r.rect.y);n.rotate(-Math.PI/2);n.fillText(r.text,0,0);n.restore()}else{n.textAlign="left";n.fillText(r.text,r.rect.x,r.rect.y)}}n.restore()};e.prototype.check_hover=function(){const t=this.sv;let e;if(this.hover){const n=t.scale.x(t.mx);const i=t.scale.y(t.my);const r=this.highlighted_label;let s;let o=0;const a=this.visible_labels.length;for(;o<a;o++){e=this.visible_labels[o];if(e.rect.contains_pt(n,i)){s=e;break}}if(r!=s){this.highlighted_label=s;this.sv.trigger("click-start");t.full_draw()}if(this.highlighted_label){t.svg.style("cursor","pointer")}else{t.svg.style("cursor","move")}}};function n(e){e=e||{};this.spectrum=e.spectrum;this.labels=new t.SVSet}n.prototype.get=function(t){return this.labels.get(t)};n.prototype.add=function(t,e,n){this.labels.push(new i(this,t,e,n))};n.prototype.add_peaks=function(){if(this.spectrum){const e=this.spectrum.peaks();let n=0;const i=e.length;for(;n<i;n++){const i=e[n];const r=t.sum_of_peaks(i.center,i.spectrum().peaks());this.add({x:i.center,y:r,text:i.label()})}}};n.prototype.update_peaks=function(){if(this.spectrum){this.labels=new t.SVSet;this.add_peaks()}};label_id=0;function i(e,n,i,r){n=n||{};display_defaults={vertical:true,font_size:12};i=t.merge(display_defaults,n.display,i);this.meta=t.merge(n.meta,r);this.label_set=e;this.vertical=i.vertical;this.font_size=i.font_size;this.text=n.text;this.x=n.x;this.y=n.y;this.stack_level=0;this.label_id()}i.prototype.label_id=function(){const t=r();this.label_id=function(){return t};return t};const r=function(){return"label-id-"+label_id++};i.prototype.adjust_rect=function(e){const n=true;let i=0;while(this.overlap(e)){this.rect.y-=t.pixel(this.font_size)*2;i+=1}this.stack_level=i};i.prototype.overlap=function(t){return this.rect.overlap(t.map(function(t){return t.rect}))};function s(t,e,n,i){this.x=t;this.y=e;this.width=n;this.height=i}s.prototype.bottom=function(){return this.y+this.height};s.prototype.top=function(){return this.y};s.prototype.left=function(){return this.x};s.prototype.right=function(){return this.x+this.width};s.prototype.overlap=function(e){const n=t.pixel(4);const i=this;let r=false;let s=0;const o=e.length;for(;s<o;s++){const t=e[s];if(i.x<=t.right()&&t.x<=i.right()+n&&i.y<=t.bottom()&&t.y<=i.bottom()){r=true;break}else{r=false}}return r};s.prototype.contains_pt=function(t,e){return t>=this.x&&t<=this.x+this.width&&e>=this.y&&e<=this.y+this.height};t.SVAnnotation=e;t.SVLabelSet=n;t.SVLabel=i})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this.id=e.id;this.name=e.name||this.id;this.tolerance=e.tolerance;this.noise;this.active=true;this.xy_data=new t.SVData;this.simple_xy_data=new t.SVData;this.labels=new t.SVLabelSet({spectrum:this});this._compounds=new t.SVSet;if(e.compounds){e.compounds.forEach(function(e){r.add_compound(new t.Compound(e))})}else if(e.peak_list){const n={clusters:[{peaks:e.peak_list}]};r.add_compound(new t.Compound(n))}if(r.compounds().present()){const n=t.default_for(e.number_of_points,1e4);const i=t.default_for(e.min_x,-1);const s=t.default_for(e.max_x,10);if(!e.xy_line){const e=t.xy_from_peaks(r.peaks(),n,i,s);r.add_xy_line(e)}}if(e.xy_line){r.add_xy_line(e.xy_line)}
729if(e.labels){e.labels.forEach(function(t){r.labels.add(t)})}}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Spectrum"};e.prototype.add_compound=function(t){this._compounds.push(t);t._spectrum=this};e.prototype.update=function(){const e=this._sv;const n=t.xy_from_peaks(this.peaks(),this.xy_data.length(),e.boundary.x.min(),e.boundary.x.max());this.add_xy_line(n);e.zoombox.update()};e.prototype.compounds=function(t){return this._compounds.get(t)};e.prototype.add_xy_line=function(e){this.xy_data=new t.SVData(e);this.noise=this.calculate_noise();const n=this.tolerance||this.noise;this.simple_xy_data=this.xy_data.simplify(n,true)};e.prototype.calculate_noise=function(){const t=[-.05,-.04];const e=this.xy_data.index_of(t[0]);const n=this.xy_data.index_of(t[1]);const i=this.xy_data.y.slice(e,n);return(d3v7.max(i)-d3v7.min(i)).toPrecision(2)};e.prototype.clusters=function(e){const n=new t.SVSet;let i=0;const r=this._compounds.length;for(;i<r;i++){n.merge(this._compounds[i].clusters())}return n.get(e)};e.prototype.peaks=function(e){const n=new t.SVSet;this.compounds().forEach(function(t){t.clusters().forEach(function(t){n.merge(t.peaks())})});return n.get(e)};Object.defineProperties(e.prototype,{active:{get:function(){return this._active},set:function(t){this._active=t;const e=this._sv;if(e){e.reset_boundaries();e.all_spectra().each(function(){if(this.active){e.boundary.update(this.xy_data);e.scale.update(this.xy_data)}});e.zoombox.update();e.legend.update()}}}});t.Spectrum=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVDot.call(this,n,i);this._compounds=new t.SVSet;this.id=e.id;this.name=e.name||this.id;this.active=true;this.xyz_data=new t.SVData2D;if(e.compounds){e.compounds}r.add_xyz_plot(e.json_data);if(e.labels){e.labels.forEach(function(t){r.labels.add(t)})}}t.inherits(e,t.SVDot);e.prototype.toString=function(){return"Spectrum2D"};e.prototype.add_compound=function(t){this._compounds.push(t);t._spectrum=this};e.prototype.add_xyz_plot=function(e){this.xyz_data=new t.SVData2D(e)};e.prototype.compounds=function(t){return this._compounds.get(t)};Object.defineProperties(e.prototype,{active:{get:function(){return this._active},set:function(t){this._active=t;const e=this._sv;if(e){e.reset_boundaries();e.all_spectra().each(function(){if(this.active){e.boundary.update(this.xy_data);e.scale.update(this.xy_data)}});e.zoombox.update();e.legend.update()}}}});t.Spectrum2D=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this._clusters=new t.SVSet;if(e){this.id=e.id;this.name=e.name;this.concentration=e.concentration;this.original_concentration=e.concentration;if(e.clusters){e.clusters.forEach(function(e){r.add_cluster(new t.Cluster(e))})}}this.update()}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Compound"};e.prototype.add_cluster=function(t){this._clusters.push(t);t._compound=this};e.prototype.update=function(){this.x_min=t.peak_min(this.peaks());this.x_max=t.peak_max(this.peaks());this.xy_data=new t.SVData(t.xy_from_peaks(this.peaks(),5e3,this.x_min,this.x_max));this.simple_xy_data=this.xy_data.simplify(5e-4,true);this._clusters.order_by("center")};e.prototype.clusters=function(t){return this._clusters.get(t)};e.prototype.peaks=function(e){const n=new t.SVSet;this._clusters.forEach(function(t){n.merge(t.peaks())});return n.get(e)};e.prototype.spectrum=function(){return this._spectrum};e.prototype.intersect=function(e,n,i){const r=t.sum_of_peaks(e,this.peaks());return n<=r&&n>=0};e.prototype.display_concentration=function(){return t.round(this.concentration,1)+" \u03bcM"};e.prototype.center=function(){let t;if(this.peaks().present()){t=d3v7.mean(this.peaks(),function(t){return t.center})}return t};e.prototype.atom_assignment_nmrml=function(){if(!window.X2JS){console.log("X2JS needs to be installed to create nmrML: https://github.com/abdmob/x2js");return}const t=d3v7.format(".2f");const e=new X2JS;const n={atomAssignmentList:{multiplet:[]}};
729this.clusters().forEach(function(e){const i=[];e.peaks().forEach(function(t){i.push({_center:t.center,_amplitude:t.amplitude,_width:t.width})});const r={_center:t(e.center()),atoms:{_atomRefs:e.atom_refs.join(" ")},multiplicity:e.nmrml_multiplet_json(),peakList:{peak:i}};n.atomAssignmentList.multiplet.push(r)});let i=e.json2xml_str(n);i=i.replace(/><\/peak>/g,"/>");return i};t.Compound=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this._peaks=new t.SVSet;this._atoms=new t.SVSet;this.lower_bound=t.number(e.lower_bound);this.upper_bound=t.number(e.upper_bound);this.weight=t.number(e.weight);this.protons=t.number(e.protons);if(e.peaks){e.peaks.forEach(function(e){r.add_peak(new t.Peak(e))})}}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Cluster"};e.prototype.add_peak=function(t){this._peaks.push(t);this.multiplet_type=undefined;t._cluster=this};e.prototype.update=function(){this._peaks.order_by("center")};e.prototype.peaks=function(t){return this._peaks.get(t)};e.prototype.compound=function(){return this._compound};e.prototype.spectrum=function(){return this.compound().spectrum()};e.prototype.center=function(){let t;if(this.peaks().present()){t=d3v7.mean(this.peaks(),function(t){return t.center})}return t};e.prototype.atoms=function(t){return this._atoms.get(t)};e.prototype.determine_multiplet_type=function(){const t=this;const e=t.peaks();let r="m";if(e.length==1){r="s"}else if(e.length==2){r="d"}else if(e.length==3){r="t"}else if(e.length==4){if(n(e)){r="dd"}else{r="q"}}else if(e.length==5){r="quint"}else if(e.length==6){if(i(e)){r="td"}else{r="dt"}}return r};const n=function(t){const e=.1;const n=t.map(function(t){return t.amplitude});const i=d3v7.max(n);const r=i*(1-e);const s=i*(1+e);return n.every(function(t){return t>=r&&t<=s})};const i=function(t){const e=t.map(function(t){return t.amplitude});const n=d3v7.min(e.slice(2,3));const i=e.slice(0,1).concat(e.slice(4,5));return i.every(function(t){return t<=n})};e.prototype.nmrml_multiplet_json=function(){let t;switch(this.multiplet_type){case"s":t={_cvRef:"NMRCV",_accession:"NMR:1000194",_name:"singlet feature"};break;case"d":t={_cvRef:"NMRCV",_accession:"NMR:1000184",_name:"doublet feature"};break;case"t":t={_cvRef:"NMRCV",_accession:"NMR:1000185",_name:"triplet feature"};break;case"q":t={_cvRef:"NMRCV",_accession:"NMR:1000186",_name:"quatruplet feature"};break;case"dd":t={_cvRef:"NMRCV",_accession:"NMR:1000192",_name:"doublet of doublets feature"};break;case"quint":t={_cvRef:"NMRCV",_accession:"NMR:1000195",_name:"quintet feature"};break;case"dt":t={_cvRef:"NMRCV",_accession:"NMR:1000196",_name:"doublet of triplets feature"};break;case"td":t={_cvRef:"NMRCV",_accession:"NMR:1000197",_name:"triplet of doublets feature"};break;case"m":t={_cvRef:"NMRCV",_accession:"NMR:1400305",_name:"multiplet feature"};break;default:t={_cvRef:"NMRCV",_accession:"NMR:1400305",_name:"multiplet feature"}}return t};Object.defineProperties(e.prototype,{multiplet_type:{get:function(){if(!this._multiplet_type){this._multiplet_type=this.determine_multiplet_type()}return this._multiplet_type},set:function(t){this._multiplet_type=t}},atom_refs:{get:function(){if(this.atoms().length>0){return this.atoms().map(function(t){return t.id})}else{return this._atom_refs||[]}},set:function(t){this._atom_refs=t}},dir_dim_atom_refs:{get:function(){return this.dir_dim_atom_refs},set:function(t){this._dir_dim_atom_refs=t}},indir_dim_atom_refs:{get:function(){return this.indir_dim_atom_refs},set:function(t){this._indir_dim_atom_refs=t}}});t.Cluster=e})(JSpectraViewer);(function(t){function e(e,n,i){const r=this;e=e||{};display_defaults={visible:false};n=t.merge(display_defaults,e.display,n);i=t.merge(e.meta,i);t.SVPath.call(this,n,i);this.center=t.number(e.center);this.original_amplitude=t.number(e.original_amplitude);this.amplitude=t.number(e.amplitude);this.width=t.number(e.width)}t.inherits(e,t.SVPath);e.prototype.toString=function(){return"Peak"};e.prototype.set_amplitude=function(t){if(t<=0)t=1e-5;this.amplitude=t};e.prototype.set_center=function(t){this.center=t};e.prototype.update=function(){};e.prototype["delete"]=function(){const e=this;const n=this.cluster();const i=this.compound();const r=this.spectrum();const s=r._sv;const o=n._peaks.filter(function(t){return t!=e});n._peaks=new t.SVSet(o);n.multiplet_type=undefined;
729if(n.peaks().empty()){const e=i._clusters.filter(function(t){return t!=n});i._clusters=new t.SVSet(e)}if(i.peaks().empty()){const e=r._compounds.filter(function(t){return t!=i});r._compounds=new t.SVSet(e)}if(r.peaks().empty()){const e=s._spectra.filter(function(t){return t!=r});s._spectra=new t.SVSet(e)}};e.prototype.peaks=function(){return new t.SVSet(this)};e.prototype.cluster=function(){return this._cluster};e.prototype.compound=function(){ 730return this.cluster().compound()};e.prototype.spectrum=function(){return this.compound().spectrum()};e.prototype.label=function(){return this.center.toFixed(3)};t.Peak=e})(JSpectraViewer);(function(t){function e(n,i){t.SVPath.call(this);const r=this;this.sv=n;this.element_type=i.element_type;this.allow_multiselect=t.default_for(i.allow_multiselect,true);this.allow_adjust=t.default_for(i.allow_adjust,true);this.allow_width_adjust=t.default_for(i.allow_width_adjust,true);this.allow_peak_creation=t.default_for(i.allow_peak_creation,false);this.show_bounds=t.default_for(i.show_bounds,true);this.show_indicators=t.default_for(i.show_indicators,false);this.display_info=t.default_for(i.display_info,true);this.constrain_adjust=i.constrain_adjust;this.restriction_spectrum_id=i.restriction_spectrum_id;this.possible_elements=i.possible_elements;display_defaults={fill:"rgba(150, 150, 150, 0.2)",visible:true};this.display_settings(t.merge(display_defaults,i.display));this.handle_spacer=t.pixel(10);this.handle_size=t.pixel(15);this._elements=new t.SVSet;this.initialize_selection_events();this.popup_box=this.sv.sv_wrapper.append("div").attr("class","jsv-select-popup-box").style("visibility","hidden");this.text_container=this.popup_box.append("div").attr("class","jsv-select-text-container");this.draw=function(){if(r.present()){e.prototype.draw.apply(this,arguments);r.draw_adjust_handles(arguments[0],arguments[1])}r.present()&&r.display_info?r.show_popup_box():r.hide_popup_box()}}t.inherits(e,t.SVPath);e.prototype.peaks=function(e){const n=new t.SVSet;let i=0;const r=this._elements.length;for(;i<r;i++){n.merge(this._elements[i].peaks())}return n.get(e)};e.prototype.elements=function(t){return this._elements.get(t)};e.prototype.clear=function(){this.sv.trigger("selection-clear");this._elements=new t.SVSet;this.sv.trigger("selection-empty");return this};e.prototype.add_element=function(t){this._elements.push(t);this.sv.highlight.remove();this.sv.trigger("selection-add");return this};e.prototype.remove_element=function(e){this._elements=new t.SVSet(this._elements.filter(function(t){return t!=e}));this.sv.trigger("selection-remove");if(this.empty())this.sv.trigger("selection-empty");return this};e.prototype.size=function(){return this._elements.length};e.prototype.present=function(){return this._elements.length>0};e.prototype.empty=function(){return this._elements.length==0};e.prototype.contains=function(t){return this._elements.contains(t)};e.prototype["delete"]=function(){this.peaks().each(function(){this["delete"]()});this.update();this.clear();this.sv.trigger("adjust-end");this.sv.full_draw()};e.prototype.hide_popup_box=function(){this.popup_box.style("visibility","hidden")};e.prototype.show_popup_box=function(){const e=this.highlighted_element;this.popup_box.style("width","100%");const n=this.sv.axis_x_reverse?"right":"left";this.popup_box.style(n,this.sv.axis_y_gutter+t.pixel(2)+"px");this.text_container.html(this.info_text());const i=this.text_container.node().offsetWidth+20;this.popup_box.style("visibility","visible").style("width",i+"px")};e.prototype.info_text=function(){let t="",e="",n="";const i=this.compounds();
730const r=this.clusters();const s=this.peaks();if(i.length==1){const e=i[0];t=e.name;if(e.concentration!==undefined){t+" ["+e.display_concentration()+"]"}}else{t=i.length+" compounds"}if(r.length==1){const t=r[0];e="cluster: "+t.center().toFixed(3)+" ppm"}else{e=r.length+" clusters"}if(s.length==1){const t=s[0];n="peak: "+t.center.toFixed(3)+" ppm"}else{n=s.length+" peaks"}text="<p>"+t+"</p><p>"+e+"</p><p>"+n+"</p>";return text};e.prototype.compounds=function(e){const n=new t.SVSet;this.peaks().forEach(function(t){n.push(t.compound())});return n.unique().get(e)};e.prototype.clusters=function(e){const n=new t.SVSet;this.peaks().forEach(function(t){n.push(t.cluster())});return n.unique().get(e)};e.prototype.adjust_concentration=function(){return this.element_type=="compound"||this.constrain_adjust=="compound"};e.prototype.draw_adjust_handles=function(t,e){const n=this;const i=this.sv;let r;if(n.allow_adjust&&n.allow_width_adjust&&n.present()){const s=this.handle_spacer;const o=this.handle_size;const a=i.get_peak_domains(n.peaks(),true);const l=e.x(d3v7.min(a[0]));const c=e.x(d3v7.max(a[0]));if(i.axis_x_reverse){this.handle_min_x=l+s;this.handle_max_x=c-s-o;r=-1}else{this.handle_min_x=l-s-o;this.handle_max_x=c+s;r=1}const u=e.y(d3v7.max(a[1])/2);this.handle_y=u-o/2;t.translate(.5,.5);t.beginPath();t.strokeStyle="rgba(50, 50, 50, 0.9)";t.rect(this.handle_min_x,this.handle_y,o,o);t.rect(this.handle_max_x,this.handle_y,o,o);t.stroke();t.beginPath();t.strokeStyle="rgba(150, 150, 150, 0.5)";t.moveTo(l,u);t.lineTo(l-s*r,u);t.moveTo(c,u);t.lineTo(c+s*r,u);t.stroke();t.translate(-.5,-.5)}};e.prototype.draw_bounds=function(e,n){const i=this;const r=t.pixel(10);const s=this.sv;if(o()){const t=this.elements(1);const o=s.get_peak_domains(i.peaks(),true);const a=n.y.range()[0];const l=n.x(t.lower_bound);const c=n.x(t.upper_bound);const u=n.x(t.center());e.save();e.translate(.5,.5);e.beginPath();e.lineWidth=2;if(t.center()<t.lower_bound||t.center()>t.upper_bound){e.strokeStyle="red";e.fillStyle="red"}else{e.strokeStyle="blue";e.fillStyle="white"}e.moveTo(l,a);e.lineTo(l+r,a-r);e.lineTo(l+r,a+r);e.lineTo(l,a);e.moveTo(c,a);e.lineTo(c-r,a-r);e.lineTo(c-r,a+r);e.lineTo(c,a);e.moveTo(u,a-r);e.lineTo(u,a+r);e.fill();e.stroke();e.translate(-.5,-.5);e.restore()}function o(){const e=i.elements(1);return i.show_bounds&&i.size()==1&&typeof e.center=="function"&&t.isNumeric(e.center())&&t.isNumeric(e.lower_bound)&&t.isNumeric(e.upper_bound)}};e.prototype.draw_indicators=function(e,n){const i=this;const r=t.pixel(10);const s=this.sv;if(i.show_indicators){const s=n.y.range()[0];e.save();e.translate(.5,.5);i.elements().forEach(function(i){let o;if(typeof i.center=="function"){o=i.center()}else{o=i.center}if(o!==undefined){o=n.x(o);e.beginPath();e.lineWidth=t.pixel(2);e.strokeStyle="green";e.fillStyle="green";e.moveTo(o,s-r);e.lineTo(o,s+r);e.fill();e.stroke()}});e.translate(-.5,-.5);e.restore()}};e.prototype.mouse_in_handle=function(){const t=this;const e=this.sv;let n;if(t.allow_adjust&&t.allow_width_adjust&&t.present()){const t=e.scale.x(e.mx);const i=e.scale.y(e.my);if(i>this.handle_y&&i<this.handle_y+this.handle_size){if(t>this.handle_max_x&&t<this.handle_max_x+this.handle_size)n="left";if(t>this.handle_min_x&&t<this.handle_min_x+this.handle_size)n="right"}}return n};e.prototype.mouse_in_selection=function(){const e=this;const n=this.sv;if(e.present()){const i=n.scale.x(n.mx);const r=n.scale.y(n.my);const s=t.sum_of_peaks(n.mx,e.peaks());return n.my<=s&&n.my>=0}};e.prototype.update=function(){const e=new t.SVSet;this.constrained_peaks().forEach(function(t){e.push(t,t.cluster(),t.compound(),t.spectrum())});e.unique().forEach(function(t){t.update()})};e.prototype.constrained_peaks=function(){const e=this;let n;if(e.constrain_adjust){n=new t.SVSet;e.peaks().forEach(function(t){if(t[e.constrain_adjust]){n.merge(t[e.constrain_adjust]().peaks())}});n=n.unique()}else{n=e.peaks()}return n};e.prototype.initialize_selection_events=function(){const e=this.sv;const n=this;let i,r,s,o,a,l,c;let u,h,f,d,p;let m,g;let _;e.svg.on("mousedown.selection",function(t){_=false;const i=t.x;const r=t.y;if(w(t)&&n.allow_adjust){k();e.svg.on("mousemove.fit",function(){S()});e.svg.on("mouseup.fit",function(){M();e.svg.on("mousemove.fit",null);
730e.svg.on("mouseup.fit",null)})}else if(b(t)&&n.allow_multiselect){T();e.svg.on("mousemove.fit",function(){C()});e.svg.on("mouseup.fit",function(){A();e.svg.on("mousemove.fit",null);e.svg.on("mouseup.fit",null)})}else{e.svg.on("mouseup.selection",function(t){if(i==t.x&&r==t.y){if(v(t)){E()}else if(!_){n.clear()}}e.svg.on("mouseup.selection",null)})}});function v(t){return n.allow_peak_creation&&(e.create_peak_mode||e.keyval()=="65"||t.metaKey)}function y(t){return n.allow_multiselect&&(e.keyval()=="83"||t.shiftKey)}function b(t){return y(t)&&!n.mouse_in_handle()&&!x()}function x(){return e.find_element_mouse_over(n.element_type,n.restriction_spectrum_id,n.possible_elements,n.visible_only)}function w(t){if(n.mouse_in_handle())return true;if(v(t))return false;let i;const r=x();const s=n.mouse_in_selection();if(r||s){if(y(t)){if(n.contains(r)){n.remove_element(r);i=false;_=true}else if(!s){n.add_element(r);i=true}}else if(!s){n.clear();n.add_element(r);i=true;_=true}else{i=true}e.fast_calc_draw()}else{i=false}return i}function k(){i=d3v7.event.x;r=d3v7.event.y;c=n.mouse_in_handle();e.svg.style("cursor","grabbing")}function S(){d3v7.event.stopPropagation();_=true;s=d3v7.event.x-i;o=d3v7.event.y-r;i=d3v7.event.x;r=d3v7.event.y;a=e.pixels_to_units_of_axis("x",s);l=e.pixels_to_units_of_axis("y",o);if(c){const t=c=="right"?1:-1;n.peaks().forEach(function(e){e.width=e.width-t*a*2;if(e.width<1e-5)e.width=1e-5})}else{if(n.adjust_concentration()){n.compounds().forEach(function(t){t.orig_amplitude=d3v7.max(t.peaks(),function(t){return t.amplitude})})}const t=n.constrained_peaks();m=d3v7.max(t,function(t){return t.amplitude});if(m<=0)m=1e-5;t.forEach(function(t){g=t.amplitude+l/m*t.amplitude;t.set_amplitude(g)});n.peaks().forEach(function(t){t.set_center(t.center+a)});if(n.adjust_concentration()){n.compounds().forEach(function(t){const e=d3v7.max(t.peaks(),function(t){return t.amplitude});t.concentration=t.concentration*e/t.orig_amplitude})}}e.trigger("adjust");e.fast_calc_draw()}function M(){n.update();e.svg.style("cursor","grab");e.trigger("adjust-end",n.compounds());e.full_draw()}function T(){h=new t.SVSet;const n=d3v7.mouse(e.canvas);d=n[0];p=n[1];u=e.svg.append("rect").attr("class","select-box").attr("x",d).attr("y",p).attr("width",0).attr("height",0)}function C(){d3v7.event.stopPropagation();_=true;const i=d3v7.mouse(e.canvas);x_new=i[0];y_new=i[1];const r=d3v7.min([d,x_new]);const s=d3v7.min([p,y_new]);const o=Math.abs(x_new-d);const a=Math.abs(y_new-p);u.attr("x",r).attr("y",s).attr("width",o).attr("height",a);const l=D(r,s,o,a);l.forEach(function(t){if(!n.contains(t)){n.add_element(t);h.push(t)}});h=new t.SVSet(h.filter(function(t){if(!l.contains(t)){n.remove_element(t);return false}return true}));e.fast_draw()}function A(){u.remove();e.full_draw()}function D(i,r,s,o){const a=new t.SVSet;let l;const c=e.scale.y.invert(t.pixel(r+o));const u=e.elements(n.element_type,n.restriction_spectrum_id,n.possible_elements,n.visible_only);let h=0;const f=u.length;for(;h<f;h++){const n=u[h];for(let r=0;r<s;r++){l=e.scale.x.invert(t.pixel(i+r));if(c<t.sum_of_peaks(l,n.peaks())){a.push(n);break}}}return a}function E(){let i,r;if(n.present()){i=n.peaks(1).cluster();r=d3v7.mean(n.peaks(),function(t){return t.width})}else{let s;if(n.restriction_spectrum_id){s=e.spectra(n.restriction_spectrum_id)}else{s=e.spectra().filter(function(t){return t.compounds().present()})[0]}i=new t.Cluster;s.compounds(1).add_cluster(i);if(s.peaks().present()){r=d3v7.mean(s.peaks(),function(t){return t.width})}else{r=.003}}const s=new t.Peak({width:r,center:0});i.add_peak(s);const o=e.mouse(e.canvas);s.set_center(e.scale.x.invert(o[0]));s.set_amplitude(e.scale.y.invert(o[1]));e.trigger("adjust-peak-created",s);if(n.element_type=="peak"){n.add_element(s)}else if(n.empty()&&n.element_type=="cluster"){n.add_element(i)}else if(n.empty()&&n.element_type=="compound"){n.add_element(i.compound())}M()}};t.SVSelection=e})(JSpectraViewer);(function(t){function e(e,n){this.sv=e;this.element_type=n.element_type;this.restriction_spectrum_id=n.restriction_spectrum_id;this.possible_elements=n.possible_elements;this.visible_only=t.default_for(n.visible_only,true);this.text_display=t.default_for(n.text_display,true);display_defaults={lineWidth:3,visible:true};this.display=t.merge(display_defaults,n.display);this.popup_box=this.sv.sv_wrapper.append("div").attr("class","jsv-highlight-popup-box").style("visibility","hidden");this.text_container=this.popup_box.append("div").attr("class","jsv-highlight-text-container")}e.prototype.hover=function(){const t=this.sv;if(this.element_type){const e=this.highlighted_element;let n=t.find_element_mouse_over(this.element_type,this.restriction_spectrum_id,this.possible_elements,this.visible_only);if(t.selection.mouse_in_selection()||t.selection.mouse_in_handle()){n=undefined}if(e!=n){this.highlighted_element=n;if(e){e.display_settings(this.saved_display_settings);this.hide_popup_box()}if(n){this.saved_display_settings=n.display_settings();n.display_settings(this.display);this.show_popup_box()}t.full_draw()}}};e.prototype.remove=function(){if(this.highlighted_element){this.highlighted_element.display_settings(this.saved_display_settings);this.highlighted_element=undefined;this.hide_popup_box()}};e.prototype.hide_popup_box=function(){this.sv.trigger("highlight-end");this.popup_box.style("visibility","hidden")};e.prototype.show_popup_box=function(){const t=this.highlighted_element;let e="";if(this.text_display===true){e=this.default_text()}else if(typeof this.text_display=="string"){e=this.parsed_text()}this.sv.trigger("highlight-start");if(this.text_display){this.popup_box.style("width","100%");this.text_container.html(e);const t=this.text_container.node().offsetWidth+20;const n=this.sv.menu.visible()?this.sv.menu.height()+5:15;this.popup_box.style("visibility","visible").style("top",n+"px").style("width",t+"px")}};e.prototype.default_text=function(){let t="";if(this.element_type=="peak"){t="Peak: "+this.highlighted_element.center.toFixed(3)+" ppm"}else if(this.element_type=="cluster"){t="Cluster: "+this.highlighted_element.center().toFixed(3)+" ppm"}else if(this.element_type=="compound"){t=this.highlighted_element.name}else if(this.element_type=="spectrum"){t=this.highlighted_element.name}return t};e.prototype.parsed_text=function(){const t=this.highlighted_element;const e=function(e,n,i){let r;if(n=="p"){r=t[i]}else if(n=="f"){r=t[i]()}else if(n=="m"){r=t.meta[i]}return r};return this.text_display.replace(/#\{(.):(.*?)\}/g,e)};t.SVHighlighter=e})(JSpectraViewer);(function(t){function e(t,e){const n=this;this.sv=t;this.id=e;this.speed=400;this.active_ids=[];this.container=d3v7.select(e);this.static_compounds;this.table=this.container.append("table").style("display","none").attr("class","jsv-cluster-navigator");this.thead=this.table.append("thead");this.tbody=this.table.append("tbody");t.on("selection-add.cluster-navigator",function(){n.table.style("display","block");n.update_table()});if(t.selection.present())t.trigger("selection-add.cluster-navigator");t.on("selection-remove.cluster-navigator",function(){n.update_table()});t.on("adjust-end.cluster-navigator",function(){n.update_table()});t.on("selection-empty.cluster-navigator",function(){if(!n.static_compounds){n.table.style("display","none")}});d3v7.select(".jsv-cluster-navigator").on("click",function(t){const e=d3v7.select(t.target);window.getSelection().removeAllRanges();if(e.classed("cluster-unit")){n.move_to_cluster(e.node())}
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Note that you must allow pop-ups!</div>'+'<div><label class="jsv-label">Width</label><div class="jsv-input-group">'+'<input class="jsv-input" id="jsv-save-width" type="text" value="'+t.width+'" /><div class="jsv-input-addon">px</div></div></div>'+'<div><label class="jsv-label">Height</label><div class="jsv-input-group">'+'<input class="jsv-input" id="jsv-save-height" type="text" value="'+t.height+'" /><div class="jsv-input-addon">px</div></div></div>'};const i=d3v7.line().x(function(t){return t.x}).y(function(t){return t.y}).curve(d3v7.curveLinear);const r=function(t,e,n,i,r,s){const o=t.append("g").attr("class","jsv-menu-button");o.append("rect").attr("x",0).attr("y",0).attr("width",i).attr("height",r).attr("rx",2).attr("ry",2).style("stroke-width",1);const a=s.remove();o.append("g").attr("class","jsv-button-image").append(function(){return a.node()});o.attr("transform","translate("+e+".5,"+n+".5)");return o};const s=function(t){const e=t.append("g");const n=3;e.append("line").attr("x1",10).attr("y1",0).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",6).attr("y1",7).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",14).attr("y1",7).attr("x2",10).attr("y2",12).attr("stroke-linecap","round").attr("stroke-width",n);e.append("line").attr("x1",2).attr("y1",16).attr("x2",18).attr("y2",16).attr("stroke-linecap","round").attr("stroke-width",n);return e};const o=function(t){const e=t.append("g");const n=4;e.append("circle").attr("cx",10).attr("cy",10).attr("r",7).style("fill","rgb(75, 75, 75");e.append("line").attr("x1",10).attr("y1",1).attr("x2",10).attr("y2",19).attr("stroke-width",n);e.append("line").attr("x1",1).attr("y1",10).attr("x2",19).attr("y2",10).attr("stroke-width",n);e.append("line").attr("x1",3.5).attr("y1",3.5).attr("x2",16.5).attr("y2",16.5).attr("stroke-width",n);e.append("line").attr("x1",16.5).attr("y1",3.5).attr("x2",3.5).attr("y2",16.5).attr("stroke-width",n);e.append("circle").attr("cx",10).attr("cy",10).attr("r",3).style("fill","white");return e};const a=function(t,e,n,i,r,s){const o=t.append("g");const a=1;const l=2;const c=n+l;const u=n+r-l;const h=2;const f=e+i/2;o.append("line").attr("x1",e).attr("y1",n).attr("x2",e+i).attr("y2",n).attr("stroke-width",a);o.append("line").attr("x1",e).attr("y1",n+r).attr("x2",e+i).attr("y2",n+r).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f).attr("y2",u).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f-h).attr("y2",c+h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",c).attr("x2",f+h).attr("y2",c+h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",u).attr("x2",f-h).attr("y2",u-h).attr("stroke-width",a);o.append("line").attr("x1",f).attr("y1",u).attr("x2",f+h).attr("y2",u-h).attr("stroke-width",a);o.attr("stroke","rgb(150, 150, 150)").attr("transform","rotate("+s+","+e+","+n+")");return o};const l=function(t){return t.append("line").attr("x1",3).attr("y1",8).attr("x2",13).attr("y2",8).attr("stroke-width",3).attr("stroke","black")};const c=function(t){const e=t.append("g");e.append("line").attr("x1",3).attr("y1",8).attr("x2",13).attr("y2",8).attr("stroke-width",3).attr("stroke","black");e.append("line").attr("x1",8).attr("y1",3).attr("x2",8).attr("y2",13).attr("stroke-width",3).attr("stroke","black");return e};const u=function(t,e){return t.append("path").attr("d",i(e)).attr("stroke","black").attr("stroke-width",3).attr("fill","none")};const h=function(t,e,n,i){return setInterval(function(){t.translate_axis(e,n);t.fast_draw()},i)};function f(t){const e=this;this.sv=t;this.slide_time=500;this._visible=true;this.menu=t.sv_wrapper.append("div").style("visibility","hidden").attr("class","jsv-menu").on("click",function(){window.getSelection().removeAllRanges()});this.menu_svg=this.menu.append("svg").attr("width",this.width()).attr("height",this.height());
730this.handle=t.sv_wrapper.append("div").attr("class","jsv-menu-handle").on("click",function(){if(e.opened()){e.close()}else{e.open()}}).on("mouseover",function(){e.handle_mouseover()}).on("mouseout",function(){e.handle_mouseout()});const n=40;const i=12;this.handle_svg=this.handle.append("svg").attr("width",n).attr("height",i);this.stroke_width=4;this.handle_data_closed=[{x:0,y:0},{x:n/2,y:i-this.stroke_width},{x:n,y:0}];this.handle_data_opened=[{x:0,y:i},{x:n/2,y:this.stroke_width},{x:n,y:i}];this.draw();t.trigger("domain-change.menu");this.close(0)}f.prototype.visible=function(t){if(arguments.length==0)return this._visible;if(t){this._visible=true;this.handle.style("visibility","visible");this.menu.style("visibility","visible")}else{this._visible=false;this.handle.style("visibility","hidden");this.menu.style("visibility","hidden")}};f.prototype.opened=function(){return this.menu.style("visibility")=="visible"};f.prototype.width=function(){return 300};f.prototype.height=function(){return 41};f.prototype.open=function(e){e=t.default_for(e,this.slide_time);this.menu.style("visibility","visible");this.menu.transition().duration(e).style("top","0px").style("opacity",1);this.handle_path.transition().duration(e).attr("d",i(this.handle_data_opened))};f.prototype.close=function(e){e=t.default_for(e,this.slide_time);this.menu.transition().duration(e).style("top","-50px").style("opacity",0).on("end",function(){d3v7.select(this).style("visibility","hidden")});this.handle_path.transition().duration(e).attr("d",i(this.handle_data_closed))};f.prototype.handle_mouseover=function(){this.handle_path.transition().duration(200).attr("stroke","black")};f.prototype.handle_mouseout=function(){this.handle_path.transition().duration(200).attr("stroke","grey")};f.prototype.draw=function(){const f=this.sv;const p=this;let m;let g=5;let _=4;this.handle_path=this.handle_svg.append("path").attr("d",i(this.handle_data_closed)).attr("stroke","grey").attr("stroke-width",this.stroke_width).attr("fill","none");if(this.sv.constructor.name==="SpectraViewer"){const t=[{x:11,y:4},{x:4,y:15},{x:11,y:26}];const e=[{x:4,y:4},{x:11,y:15},{x:4,y:26}];const n=u(this.menu_svg,t);const i=u(this.menu_svg,e);this.nav_group=this.menu_svg.append("g");this.scroll_left_button=r(this.nav_group,0,0,15,30,n);this.scroll_right_button=r(this.nav_group,17,0,15,30,i);this.nav_group.attr("transform","translate("+7+","+4+")");this.scroll_left_button.on("mousedown",function(){if(d3v7.select(this).classed("disabled"))return;m=h(f,"x",g,_);return false});this.scroll_right_button.on("mousedown",function(){if(d3v7.select(this).classed("disabled"))return;m=h(f,"x",-g,_);return false});$(document).mouseup(function(){if(m){clearInterval(m);f.full_draw()}})}else{this.reset_zoom_button=r(this.menu_svg,10,4,30,30,d(this.menu_svg));this.reset_zoom_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=[[-10,500],[-10,500]];f.move_to(t,1e3)})}this.zoom_group=this.menu_svg.append("g");this.zoom_y_minus_button=r(this.zoom_group,6,18,16,16,l(this.menu_svg));this.zoom_y_plus_button=r(this.zoom_group,6,0,16,16,c(this.menu_svg));this.zoom_x_minus_button=r(this.zoom_group,25,9,16,16,l(this.menu_svg));this.zoom_x_plus_button=r(this.zoom_group,43,9,16,16,c(this.menu_svg));a(this.zoom_group,0,.5,5,34,0);a(this.zoom_group,25.5,32,5,34,-90);this.zoom_group.attr("transform","translate("+55+","+2+")");this.zoom_x_minus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.x.diff()/2;const e=[[f.scale.x.min()-t,f.scale.x.max()+t],f.scale.y.domain()];f.move_to(e)});this.zoom_x_plus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.x.diff()/4;const e=[[f.scale.x.min()+t,f.scale.x.max()-t],f.scale.y.domain()];f.move_to(e)});this.zoom_y_minus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.y.diff()/2;const e=[f.scale.x.domain(),[f.scale.y.min()-t,f.scale.y.max()+t]];f.move_to(e)});this.zoom_y_plus_button.on("click",function(){if(d3v7.select(this).classed("disabled"))return;const t=f.scale.y.diff()/4;const e=[f.scale.x.domain(),[f.scale.y.min()+t,f.scale.y.max()-t]];f.move_to(e)});f.on("domain-change.menu",function(){if(f.zoom_x==1){p.zoom_x_minus_button.classed("disabled",true)}else if(f.zoom_x>=f.zoom_max){p.zoom_x_plus_button.classed("disabled",true)}
730else{p.zoom_x_minus_button.classed("disabled",false);p.zoom_x_plus_button.classed("disabled",false)}if(f.zoom_y==1){p.zoom_y_minus_button.classed("disabled",true)}else if(f.zoom_y>=f.zoom_max){p.zoom_y_plus_button.classed("disabled",true)}else{p.zoom_y_minus_button.classed("disabled",false);p.zoom_y_plus_button.classed("disabled",false)}if(f.constructor.name==="SpectraViewer"){if(f.scale.x.min()==f.boundary.x.min()){p.scroll_right_button.classed("disabled",true)}else{p.scroll_right_button.classed("disabled",false)}if(f.scale.x.max()==f.boundary.x.max()){p.scroll_left_button.classed("disabled",true)}else{p.scroll_left_button.classed("disabled",false)}}else if(f.zoom_y===1&&f.zoom_x===1){p.reset_zoom_button.classed("disabled",true)}else{p.reset_zoom_button.classed("disabled",false)}});const v=this.menu_svg.append("text").attr("x",15).attr("y",24).attr("font-family","sans-serif").attr("font-size","26px").attr("stroke-width",1).attr("fill","black").attr("class","jsv-button-text").style("text-anchor","middle").text("?");this.help_button=r(this.menu_svg,260,4,30,30,v);this.help_button.on("click",function(){f.help.dialog.open()});const y=s(this.menu_svg).attr("transform","translate(5,7)");this.download_button=r(this.menu_svg,220,4,30,30,y);this.download_dialog=new t.SVDialog(f,{header_text:"Save Image",content_text:n(f),buttons:{Cancel:function(){this.close()},Generate:function(){e(f,this)}},width:400,height:250});this.download_button.on("click",function(){p.download_dialog.open()});const b=o(this.menu_svg).attr("transform","translate(5,5)");this.settings_button=r(this.menu_svg,180,4,30,30,b);this.settings_button.on("click",function(){f.settings.open()});const x=this.menu_svg.append("text").attr("x",149).attr("y",32).attr("font-family","sans-serif").attr("font-size","16px").attr("stroke-width",1).attr("fill","grey").attr("class","jsv-button-text").style("text-anchor","middle").text("JSV")};let d=function(t){let e=t.append("g");e.append("circle").attr("cx",13).attr("cy",12).attr("r",9).style("fill","grey");e.append("circle").attr("cx",13).attr("cy",12).attr("r",7).style("fill","white");e.append("line").attr("x1",17).attr("y1",17).attr("x2",25).attr("y2",25).attr("stroke-width",3).attr("stroke","black");e.append("line").attr("x1",9).attr("y1",12).attr("x2",17).attr("y2",12).attr("stroke-width",3).attr("stroke","black");return e};t.SVMenu=f})(JSpectraViewer);(function(t){function e(e){this.sv=e;const r=e.toString()==="SpectraViewer"?n:i;this.dialog=new t.SVDialog(e,{header_text:"JSpectraViewer (JSV) Help",content_text:r,width:700,height:350})}let n=""+"The view of the spectra can be scrolled around or scaled using the controls in the menu or by using the various mouse and keyboard shortcuts:"+"<h3>Viewer Controls</h3>"+'<table class="jsv-table">'+"<thead><tr><th>Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Zoom In/Out X Axis</td><td>Scroll wheel</td></tr>"+"<tr><td>Zoom In/Out Y Axis</td><td>Option/Alt Key + Scroll wheel</td></tr>"+"<tr><td>Zoom In on Area</td><td>Option/Alt Key + Click and Drag around area</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Option/Alt Key + Click once anywhere on viewer </td></tr>"+"<tr><td>Move Around</td><td>Click and Drag</td></tr></tbody></table>"+"<h3>Zoombox Controls (box in upper left corner)</h3>"+'<table class="jsv-table">'+"<thead><tr><th>Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Move Around</td><td>Click and Drag grey selection box</td></tr>"+"<tr><td>Zoom In on Area</td><td>Click on unselected region and drag around new selection</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Click once anywhere in unselected region</td></tr>"+"<tr><td>Alter Zoomed Area</td><td>Click and Drag on sides of grey selection box</td></tr></tbody></table>"+"<h3>Troubleshooting</h3>"+"<p>If the viewer is not showing any spectra or is slow, try updating to the latest version of your "+'browser. We have found that <a href="https://www.google.com/chrome" target="_blank">Google Chrome</a> is the fastest.</p></div></div>';let i=""+"The view of the spectra can be scaled using the controls in the menu or by using the various mouse and keyboard shortcuts:"+"<h3>Viewer Controls</h3>"+'<table class="jsv-table">'+"<thead><tr><th>
730Action</th><th>Command</th></tr></thead><tbody>"+"<tr><td>Adjust Peak Sensitivity</td><td>Scroll wheel</td></tr>"+"<tr><td>Zoom In on Area</td><td>Click and Drag around area</td></tr>"+"<tr><td>Zoom Out Completely</td><td>Double click inside viewer</td></tr>"+"<h3>Troubleshooting</h3>"+"<p>If the viewer is not showing any spectra or is slow, try updating to the latest version of your "+'browser. We have found that <a href="https://www.google.com/chrome" target="_blank">Google Chrome</a> is the fastest.</p></div></div>';t.SVHelp=e})(JSpectraViewer);(function(t){function e(e,n){n=n||{};const i=this;this.wrapper=e.sv_wrapper.node();this.fade_time=t.default_for(n.fade_time,500);this.header_text=t.default_for(n.header_text,"");this.content_text=t.default_for(n.content_text,"");this.height=t.default_for(n.height,300);this.width=t.default_for(n.width,300);this.buttons=n.buttons;this.box=d3v7.select(this.wrapper).append("div").style("display","none").attr("class","jsv-dialog");this.header=this.box.append("div").attr("class","jsv-dialog-header").html(this.header_text);this.dismiss=this.box.append("div").attr("class","jsv-dialog-dismiss").html("X").on("click",function(){i.close()});this.contents=this.box.append("div").attr("class","jsv-dialog-contents jsv-scroll");if(this.buttons){this.footer=this.box.append("div").attr("class","jsv-dialog-footer");this.generate_buttons()}this.contents.html(this.content_text);this.adjust_size();return i}e.prototype.visible=function(){return this.box.style("display")!="none"};e.prototype.open=function(){this.adjust_size();this.box.style("display","block");this.box.transition().duration(this.fade_time).style("opacity",1);return this};e.prototype.close=function(){this.box.transition().duration(this.fade_time).style("opacity",0).on("end",function(){d3v7.select(this).style("display","none")});return this};e.prototype.generate_buttons=function(){const t=this;const e=Object.keys(this.buttons);e.forEach(function(e){t.footer.append("button").html(e).attr("class","jsv-button").on("click",function(){t.buttons[e].call(t)})})};e.prototype.adjust_size=function(){const t=50;const e=this.wrapper.offsetWidth;const n=this.wrapper.offsetHeight;let i=this.width;let r=this.height;if(this.height>n-t)r=n-t;if(this.width>e-t)i=e-t;const s=40;const o=this.buttons?35:0;const a=r-s-o;this.box.style("width",i+"px").style("height",r+"px");this.contents.style("height",a+"px")};t.SVDialog=e})(JSpectraViewer);(function(t){function e(e,n){n=n||{};const i=this;this.sv=e;this.object=t.default_for(n.object,e);this.title=t.default_for(n.title,"Settings");this.height=t.default_for(n.height,400);this.width=t.default_for(n.width,400);n.settings=n.settings||[];this.settings=[];n.settings.forEach(function(t){ 731i.settings.push(new r(i.object,t))});this.dialog=new t.SVDialog(e,{header_text:this.title,content_text:this.settings_html(),buttons:{Done:function(){this.close()}},width:this.width,height:this.height});return this}e.prototype.open=function(){const t=this;this.dialog.contents.html(this.settings_html());d3v7.selectAll(".jsv-setting").on("change",function(){const e=d3v7.select(this);const n=t.find(e.attr("id"));const i=e.property("checked");n.value(i);t.sv.full_draw()});this.dialog.open();return this};e.prototype.close=function(){this.dialog.close();return this};e.prototype.find=function(t){return this.settings.filter(function(e){return e.id()==t})[0]};e.prototype.settings_html=function(){html='<div class="jsv-settings">';this.settings.forEach(function(t){html+='<div><label class="jsv-label">'+t.label+"</label>";html+='<div class="jsv-input-group">';if(t.type=="boolean"){html+=n(t)}html+="</div></div>"});html+="</div>";return html};const n=function(t){html="";html+='<input type="checkbox" class="jsv-input jsv-setting" id="'+t.id()+'"';if(t.value()){html+=' checked="true" '}html+=" />";return html};let i=0;function r(e,n){n=n||{};this.object=e;this.label=n.label;this.property=n.property;this.type=t.default_for(n.type,"boolean");this.id()}r.prototype.id=function(){const t=s();this.id=function(){return t};return t};const s=function(){return"jsv-setting-id-"+i++};r.prototype.value=function(t){if(arguments.length==0){if(typeof this.property==="function"){t=this.property.call(this.object)}else{t=this.object[this.property]}}else{if(typeof this.property==="function"){this.property.call(this.object,t)}else{this.object[this.property]=t}self.sv.full_draw()}return t};t.SVSettings=e})(JSpectraViewer);(function(t){function e(e){t.pixel(10);this.sv=e;let n=e.zoombox_size||10;this.width=e.width*n/100;this.height=e.height*n/100;this.adjusting=false;this.svg=e.sv_wrapper.append("svg").attr("width",this.width+1).attr("height",this.height+1).style("position","absolute").style("top",0).style("left",e.width-this.width-1);if(e.axis_x_reverse){this.svg.style("left",0)}this.border=this.svg.append("rect").attr("x",0).attr("y",0).attr("width",this.width).attr("height",this.height).attr("fill","white").attr("stroke","#BBB");this.scale=new t.SVScale;this.scale.y.range([this.height,0]);let i=this.sv.axis_x_reverse?[this.width,0]:[0,this.width];this.scale.x.range(i);this.initialize_brushing();this.spectra_function=d3v7.line().x(t=>this.scale.x(t.x)).y(t=>this.scale.y(t.y))}Object.defineProperty(e.prototype,"visible",{get:function(){return this._visible},set:function(t){this._visible=t;if(this._visible){this.svg.style("display","block")}else{this.svg.style("display","none")}this.sv.legend.update();this.sv.draw()}});e.prototype.initialize_brushing=function(){const e=this;const n=e.sv;e.brush=d3v7.brush().extent([[e.scale.x.range()[1],e.scale.y.range()[1]],[e.scale.x.range()[0],e.scale.y.range()[0]]]).on("start",i).on("brush",r).on("end",s);e.select_brush=e.svg.append("g").attr("class","active-brush").call(e.brush);function i(t){if(t.sourceEvent)t.sourceEvent.preventDefault()}function r(i){if(!(i.selection===null)&&!e.adjusting){let t;if(n.axis_y_lock!==false){const n=i.selection;const r=n[0][0];const s=n[1][0];const o=e.scale.y.domain()[0];const a=e.scale.y.invert(d3v7.pointer(i,e.svg.node())[1]);const l=e.scale.y.domain()[1];let c=Math.min(a,l);c=Math.max(o,c);t=[[e.scale.x.invert(s),0],[e.scale.x.invert(r),c]]}if(!t)t=[[e.scale.x.invert(i.selection[1][0]),e.scale.y.invert(i.selection[1][1])],[e.scale.x.invert(i.selection[0][0]),e.scale.y.invert(i.selection[0][1])]];n.set_domain_to_brush_extent(t,false);n.fast_draw()}if(n.debug){n.debug_data.zbox["X1"]=t.round(e.brush.extent()[0][0]);n.debug_data.zbox["Y1"]=t.round(e.brush.extent()[0][1]);n.debug_data.zbox["X2"]=t.round(e.brush.extent()[1][0]);n.debug_data.zbox["Y2"]=t.round(e.brush.extent()[1][1])}}function s(t){if(!e.adjusting){n.zoom_axis="";n.draw()}}};e.prototype.add_spectrum=function(t){const e=this.sv.boundary;this.scale.x.domain(e.x.domain());this.scale.y.domain(e.y.domain());this.svg.append("path").attr("id",t.id).attr("d",this.spectra_function(t.simple_xy_data.asArray())).attr("stroke",t.color).attr("stroke-width",.5).attr("fill","none");this.set_zoom_area(e)};e.prototype.remove_spectra=function(t){this.sv.container.select("path#"+t).remove()};e.prototype.update=function(){const t=this;const e=this.sv;if(e.axis_x_reverse){this.svg.style("left",0)}else{this.svg.style("left",e.width-this.width-1)}
731this.sv.all_spectra().forEach(function(e){t.remove_spectra(e.id);if(e.active){t.add_spectrum(e)}})};e.prototype.set_zoom_area=function(t){let e=this;const n=e.scale.x(t.x.domain()[1]);const i=e.scale.x(t.x.domain()[0]);const r=e.scale.y(t.y.domain()[1]);const s=e.scale.y(t.y.domain()[0]);e.adjusting=true;e.select_brush.call(e.brush.move,[[n,r],[i,s]]);e.adjusting=false};t.ZoomBox=e})(JSpectraViewer);(function(t){t.default_for=function(t,e){return t===undefined?e:t};t.pixel_ratio=1;t.pixel=function(e){return e*t.pixel_ratio};t.get_pixel_ratio=function(t){const e=t.getContext("2d");const n=window.devicePixelRatio||1;const i=e.webkitBackingStorePixelRatio||e.mozBackingStorePixelRatio||e.msBackingStorePixelRatio||e.oBackingStorePixelRatio||e.backingStorePixelRatio||1;return n/i};t.scale_resolution=function(t,e){const n=t.getContext("2d");if(e!=1){const n=t.width;const i=t.height;t.width=n*e;t.height=i*e;t.style.width=n+"px";t.style.height=i+"px"}};Function.prototype.inherits=function(t){this.prototype=Object.create(t.prototype)};t.merge=function(){const t={};let e,n,i;let r=0;const s=arguments.length;for(;r<s;r++){e=arguments[r];if(typeof e==="object"){n=Object.keys(e);let r=0;const s=n.length;for(;r<s;r++){i=n[r];t[i]=e[i]}}}return t};t.unique_id=function(t,e,n){let i;do{i=t+e;e++}while(n.indexOf(i)>-1);return i};t.round=function(t,e=2){return d3v7.round(t,e)};t.elapsed_time=function(t){const e=(new Date).getTime()-t;return e+" ms"};t.index_of_value=function(t,e,n){let i=0;let r=t.length-1;let s,o;if(t[i]>=e)return i;if(t[r]<=e)return r;while(r-i>1){s=(i+r)/2|0;o=t[s];if(o<e){i=s}else if(o>e){r=s}else{return s}}return n?r:i};t.lorentzian=function(t,e,n,i){const r=n*n;const s=t-e;return i*r/(r+4*s*s)};t.sum_of_peaks=function(e,n){let i=0;let r;for(let s=0;s<n.length;s++){r=n[s];i+=t.lorentzian(e,r.center,r.width,r.amplitude)}return i};t.xy_from_peaks=function(e,n,i,r,s){if(s)e=t.peaks_in_range(e,i,r,6);const o=t.peaks_in_range(e,i,r);const a=o.order_by("center").map(function(t){return t.center});let l=i;const c=r;const u=[],h=[];const f=(r-i)/n;while(l<c){u.push(l);h.push(t.sum_of_peaks(l,e));if(a[0]&&a[0]<=l+f){l=a.shift()}else{l+=f}}u.push(r);h.push(t.sum_of_peaks(r,e));return{x:u,y:h}};t.peaks_in_range=function(e,n,i,r){r=r||0;const s=new t.SVSet;e.forEach(function(e){if(t.peak_min([e],r)<i&&t.peak_max([e],r)>n){s.push(e)}});return s};t.peak_min=function(t,e){e=e||3;let n,i;if(t.length>0){i=t[0]}t.forEach(function(t){if(t.center<i.center){i=t}});if(i){n=i.center-e*i.width}return n};t.peak_max=function(t,e){e=e||3;let n,i;if(t.length>0){i=t[0]}t.forEach(function(t){if(t.center>i.center){i=t}});if(i){n=i.center+e*i.width}return n};t.number=function(t){if(t===undefined)return;return Number(t)};t.isNumeric=function(t){return isFinite(t)&&parseFloat(t)==t};t.decimalPlaces=function(t){const e=(""+t).match(/(?:\.(\d+))?(?:[eE]([+-]?\d+))?$/);if(!e){return 0}return Math.max(0,(e[1]?e[1].length:0)-(e[2]?+e[2]:0))};t.colors=function(t,e,n,i,r,s,o,a,l,c){const u=[];if(t==undefined)t=50;if(e==undefined)e=200;if(n==undefined)n=30;if(i==undefined)i=1;if(r==undefined)r=2.4;if(s==undefined)s=2.4;if(o==undefined)o=2.4;if(a==undefined)a=0;if(l==undefined)l=2;if(c==undefined)c=4;for(let h=0;h<t;++h){const t=Math.round(Math.sin(r*h+a)*n+e);const f=Math.round(Math.sin(s*h+l)*n+e);const d=Math.round(Math.sin(o*h+c)*n+e);u.push("rgba("+t+","+f+","+d+","+i+")")}return u};t.test_colors=function(t){t.forEach(function(t){document.write('
731<font style="color:'+t+'">█</font>')});document.write("<br/>")};t.convert_base64_to_float64=function(t,e){if(typeof e==="undefined"){e=false}const n=atob(t);let i=new Int8Array(n.length);if(e){i=new Zlib.Deflate(i)}for(let t=0;t<n.length;t++){i[t]=n.charCodeAt(t)}const r=new Float64Array(i.buffer);return r};t.convert_bayesil_data=function(e){const n={id:t.default_for(e.id,"Fit"),name:t.default_for(e.name,"Fit"),compounds:[],display:t.merge({color:"blue"},e.display),meta:{dss_concentration:e.dss_conc}};e.metabolites.forEach(function(e){const i={concentration:e.concentration,original_concentration:e.concentration,concentration_units:"\u03bcM",id:e.id,name:e.name,clusters:[],display:{visible:false},meta:{dss_ratio:t.default_for(t.number(e.dss_ratio),1),threshold:e.threshold,score:e.score}};i.meta.amplitude_coefficient=i.concentration/i.meta.dss_ratio/n.meta.dss_concentration;e.clusters.forEach(function(e){const n={peaks:[],meta:{shift:e.shift}};e.shift=t.default_for(e.shift,0);n.upper_bound=e.upper_bound;n.lower_bound=e.lower_bound;n.meta.lower_bound_diff=e.lower_bound_diff;n.meta.upper_bound_diff=e.upper_bound_diff;e.peaks.forEach(function(t){const r={center:Number(t.center)+Number(e.shift),width:Number(t.width),original_amplitude:Number(t.amplitude),amplitude:Number(t.amplitude)*Number(i.meta.amplitude_coefficient),meta:{initial_width:t.initial_width}};n.peaks.push(r)});i.clusters.push(n)});n.compounds.push(i)});return n};t.create_bayesil_json=function(t,e){t=t||{xy_data:{x:[],y:[]}};const n={dss_conc:e.meta.dss_concentration,metabolites:[],meta:t.meta};e.compounds().forEach(function(t){const i={name:t.name,id:t.id,concentration:t.concentration,dss_ratio:t.meta.dss_ratio,score:t.meta.score,threshold:t.meta.threshold,clusters:[]};t.meta.amplitude_coefficient=t.concentration/t.meta.dss_ratio/e.meta.dss_concentration;t.clusters().forEach(function(e){const n={center:e.center(),initial_center:e.meta.initial_center,shift:e.center(),lower_bound:e.lower_bound,upper_bound:e.upper_bound,peaks:[]};e.peaks().forEach(function(i){let r;if(t.original_concentration==0){r=i.original_amplitude}else{r=i.amplitude/t.meta.amplitude_coefficient}const s={amplitude:r,center:i.center-e.center(),width:i.width,initial_width:i.meta.initial_width};if(isNaN(s.amplitude))s.amplitude=0;n.peaks.push(s)});i.clusters.push(n)});n.metabolites.push(i)});n.spectrum_xy={x:t.xy_data.x,y:t.xy_data.y};return n};if(!Number.isInteger){Number.isInteger=function t(e){return typeof e==="number"&&isFinite(e)&&e>-9007199254740992&&e<9007199254740992&&Math.floor(e)===e}}})(JSpectraViewer);(function(t){let e=[];function n(t,n){const i=e.x[t]-e.x[n],r=e.y[t]-e.y[n];return i*i+r*r}function i(t,n,i){let r=e.x[n],s=e.y[n],o=e.x[i]-r,a=e.y[i]-s;if(o!==0||a!==0){const n=((e.x[t]-r)*o+(e.y[t]-s)*a)/(o*o+a*a);if(n>1){r=e.x[i];s=e.y[i]}else if(n>0){r+=o*n;s+=a*n}}o=e.x[t]-r;a=e.y[t]-s;return o*o+a*a}function r(t,e){let i=t[0];const r=[i];let s;let o=1;const a=t.length;for(;o<a;o++){s=t[o];if(n(s,i)>e){r.push(s);i=s}}if(i!==s)r.push(s);return r}function s(t,e){const n=t.length,r=typeof Uint8Array!=="undefined"?Uint8Array:Array,s=new r(n);let o=0,a=n-1;const l=[],c=[];let u,h,f,d;s[o]=s[a]=1;while(a){h=0;for(u=o+1;u<a;u++){f=i(t[u],t[o],t[a]);if(f>h){d=u;h=f}}if(h>e){s[d]=1;l.push(o,d,d,a)}a=l.pop();o=l.pop()}for(u=0;u<n;u++){if(s[u])c.push(t[u])}return c} 732/** 733 * Simplify.js is a high-performance JS polyline simplification library by Vladimir Agafonkin. 734 * [Orignal Project](http://mourner.github.io/simplify-js) 735 * 736 * It has been adapted here to work with a different point format. 737 * The format used in JSV is an object of arrays: 738 * ```js 739 * points = { x: [1, 2, 3], y: [10, 20, 30] }; 740 * ``` 741 * There can also be an optional yi array, to hold the imaginary component of 742 * the line. This is used when incorporating phasing into the viewer. 743 * 744 * The orginal format was an array of points: 745 * ```js 746 * // Do not use this format 747 * points = [ {x:1, y:10}, {x:2, y:20}, {x:3, y:30} ]; 748 * ``` 749 * *** 750 * Copyright (c) 2012, Vladimir Agafonkin 751 * All rights reserved. 752 * 753 * Redistribution and use in source and binary forms, with or without modification, are 754 * permitted provided that the following conditions are met: 755 * 756 * 1. Redistributions of source code must retain the above copyright notice, this list of 757 * conditions and the following disclaimer. 758 * 759 * 2. Redistributions in binary form must reproduce the above copyright notice, this list 760 * of conditions and the following disclaimer in the documentation and/or other materials 761 * provided with the distribution. 762 * 763 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY 764 * EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF 765 * MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE 766 * COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
767 * EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF 768 * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) 769 * HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR 770 * TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 771 * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.) 772 * 773 * @param {Object} points An object containing an x and y array of points. There may also be an yi array. 774 * @param {Number} tolerance Affects the amount of simplification. [Default: 1] 775 * @param {Boolean} highestQuality Excludes distance-based preprocessing step which leads to highest quality simplification but runs ~10-20 times slower. [Default: false] 776 */function o(t,n,i){const o=t.x.length;if(o<=1)return t;e=t;let a=new Array(o);for(let t=0;t<o;t++){a[t]=t}const l=n!==undefined?n*n:1;a=i?a:r(a,l);a=s(a,l);const c=new Array(a.length);const u=new Array(a.length);for(let t=0,n=a.length;t<n;t++){c[t]=e.x[a[t]];u[t]=e.y[a[t]]}let h;if(e.yi){h=new Array(a.length);for(let t=0,n=a.length;t<n;t++){h[t]=e.yi[a[t]]}}t={x:c,y:u};if(h){t.yi=h}return t}t.simplify=o})(JSpectraViewer);(function(t){function e(e){this.container_id=e.container_id;this.width=e.width||200,this.height=e.height||200,this.container=d3v7.select(this.container_id);this.container.classed("js-structure",true);this.data=e.data;this.format=e.format||"mol";this.x_scale;this.y_scale;this.avgL=0;this.show_hydrogen=t.default_for(e.show_hydrogen,false);this.show_atom_numbers=t.default_for(e.show_atom_numbers,false);this.use_jsmol=t.default_for(e.use_jsmol,false);this.nmr_nucleus=e.nmr_nucleus;this.interactive_1H=true;this._atoms=new t.SVSet;this._bonds=new t.SVSet;if(this.data){this.read_data(this.data,this.format)}this.handlers=new t.SVEvents;this.on=this.handlers.on;this.off=this.handlers.off;this.trigger=this.handlers.trigger}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.initSVG=function(){const t=this;const e=t.container;const n=d3v7.extent(t.atoms(),function(t){return t.x});const i=d3v7.extent(t.atoms(),function(t){return t.y});const r=[15,15,20,15];t.margins=r;let s=t.width-r[1]-r[3];let o=t.height-r[0]-r[2];const a=s/o;t.structure_ratio=(n[1]-n[0])/(i[1]-i[0]);const l=a>=t.structure_ratio?"height":"width";if(l=="height"){s=o*t.structure_ratio}else{o=s/t.structure_ratio}t.wp=s;t.hp=o;t.x_scale=d3v7.scaleLinear().domain([n[0],n[1]]).range([r[1],s-r[3]]);t.y_scale=d3v7.scaleLinear().domain([i[0],i[1]]).range([o-r[2],r[0]]);e.style({height:t.height+"px",width:t.width+"px"});t.add_menu_bar();if(!this.use_jsmol)t.add_resizer();e.select("div.js-graph-div").remove();let c=null;if(!this.use_jsmol){t.graph_div=e.append("div").attr("class","js-graph-div").style({width:s+"px",height:o+"px",margin:"0 auto","margin-top":(t.height-o-r[0])/2+"px"});c=t.graph_div.append("svg:svg").attr("width","100%").attr("height","100%").append("svg:g")}return c};e.prototype.add_menu_bar=function(){const t=this;t.container.select("div.menubar").remove();const e=t.container.insert("div",":first-child").attr("class","menubar");t.button_toggle_H=e.append("div").attr("class","toggle-hydrogens menu-button button-on").style("width","60px").text("Show H").on("click",function(){t.toggleH();d3v7.event.stopPropagation()});t.button_toggle_numbers=e.append("div").attr("class","toggle-atom-ids menu-button button-on").text("Show #").style("width","60px").style("padding-bottom","50px").on("click",function(){t.toggleAtomNumbers();d3v7.event.stopPropagation()});t.menu_buttons_width=t.button_toggle_numbers.offsetWidth+t.button_toggle_numbers.offsetWidth;t.menu_title=e.append("div").attr("class","structure-title").style("width",t.menu_buttons_width+"px").text(t.title)};e.prototype.add_resizer=function(){const t=this;const e=t.margins;const n=t.wp;const i=t.hp;const r=d3v7.select("body");t.resizer=t.container.append("div").attr("class","js-structure-resizer").on("mousedown.resizer",function(){let s=d3v7.event.x;let o=d3v7.event.y;d3v7.event.preventDefault();r.on("mousemove.resizer",function(){dx_mouse=d3v7.event.x-s;dy_mouse=d3v7.event.y-o;s=d3v7.event.x;o=d3v7.event.y;t.height=t.height+dy_mouse;t.width=t.width+dx_mouse;t.container.style({height:t.height+"px",width:t.width+"px"});const r=t.width/t.height;const a=r>=t.structure_ratio?"height":"width";let l;if(a=="height"){l=(t.height-e[0]-e[2])/i}else{l=(t.width-e[1]-e[3])/n}t.graph.attr("transform","scale("+l+","+l+")");const c=i*l;const u=(t.height-c-e[0])/2;t.graph_div.style({width:n*l+"px",height:i*l+"px","margin-top":u+"px"});t.menu_title.style("width",t.width-t.menu_buttons_width+"px");t.trigger("structure-resize")});r.on("mouseup.resizer",function(){r.on("mousemove.resizer",null);r.on("mouseup.resizer",null)})}).on("click.resizer",function(){d3v7.event.stopPropagation()});const s=[{x:9,y:4},{x:4,y:4},{x:4,y:9},{x:4,y:4},{x:16,y:16},{x:16,y:11},{x:16,y:16},{x:11,y:16}];const o=d3v7.svg.line().x(function(t){return t.x}).y(function(t){return t.y}).interpolate("linear");const a=t.resizer.append("svg").style({width:"100%",height:"100%"}).append("path").attr("d",o(s)).attr("stroke","grey").attr("stroke-width",1).attr("stroke-linejoin","round").attr("stroke-linecap","round").attr("fill","none")};e.prototype.drawBonds=function(){const t=this;const e=this.graph;const i=this.x_scale;const r=this.y_scale;this.create_bond_functions();
776this.bonds().forEach(function(s){let o;let a;let l;let c;const u=s.a1;const h=s.a2;let f;const d=h.x-u.x,p=h.y-u.y,m=Math.sqrt(d*d+p*p),g=d/m*.2,_=p/m*.2;const v=u.x+g,y=u.y+_,b=h.x-g,x=h.y-_;t.avgL+=n(i(v),r(y),i(b),r(x));let w,k,S,M=[];if(s.order===1){if(s.stereo===1){const i=n(v,y,b,x);w=.1;k=w*(x-y)/i;S=w*(v-b)/i;M=[[v,y],[b+k,x+S],[b-k,x-S]];f=e.append("svg:path").style("fill","black").style("stroke-width",1).attr("d",t.wedgeBond(M))}else if(s.stereo===6){w=.2;k=w*(x-y)/m;S=w*(v-b)/m;o=b+k-v;a=x+S-y;l=b-k-v;c=x-S-y;for(let t=.05;t<=1;t+=.15){M.push([v+o*t,y+a*t],[v+l*t,y+c*t])}f=e.append("svg:path").style("fill","none").style("stroke-width",1).attr("d",t.hashBond(M)).attr("stroke","black")}else if(s.stereo===4){w=.2;k=w*(x-y)/m;S=w*(v-b)/m;o=b+k-v;a=x+S-y;l=b-k-v;c=x-S-y;for(let t=.05;t<=1;t+=.1){if(M.length%2===0){M.push([v+o*t,y+a*t])}else{M.push([v+l*t,y+c*t])}}f=e.append("svg:path").attr("d",t.wigglyBond(M)).attr("fill","none").style("stroke-width",1).attr("stroke","black")}else{M=[[v,y],[b,x]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}}else if(s.order===2){w=.1;k=w*(x-y)/m;S=w*(v-b)/m;M=[[v+k,y+S],[b+k,x+S],[v-k,y-S],[b-k,x-S]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").style("fill","none").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}else if(s.order===3){w=.15;k=w*(x-y)/m;S=w*(v-b)/m;M=[[v,y],[b,x],[v+k,y+S],[b+k,x+S],[v-k,y-S],[b-k,x-S]];f=e.append("svg:path").attr("d",t.plainBond(M)).attr("stroke-width","1").attr("stroke-linecap","round").attr("stroke-linejoin","round").attr("stroke","black")}if(u.is("H")||h.is("H")){f.classed("bond-H",true)}});t.avgL/=this.bonds().length};e.prototype.drawAtoms=function(){const t=this.graph;const e=this.avgL;const n=this.x_scale;const i=this.y_scale;this.atoms().forEach(function(r){const s=t.append("svg:g").attr("transform","translate("+n(r.x)+","+i(r.y)+")");s.attr("class","atom");if((r.is("C")||r.is("N"))&&r.bonded_Hs().length>0){s.classed("nmr-1h",true)}if(r.is("C")){s.classed("nmr-13c",true)}if(r.is("H")){s.classed("atom-H",true);if(r.isBondedTo("C")||r.isBondedTo("N")){s.classed("nmr-1h",true)}}s.attr("data-atom-number",r.number);s.attr("data-atom-id",r.id);s.append("svg:circle").attr("r",Math.ceil(e/3)).attr("fill","white").attr("opacity","1");s.append("svg:circle").attr("r",Math.ceil(e/2)).attr("fill-opacity","0").attr("class","overlay");s.append("text").attr("dy",Math.ceil(e/4.5)).attr("text-anchor","middle").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/1.5)).attr("fill",r.color()).text(r.symbol);s.append("text").attr("dy",Math.ceil(e/2)+2).attr("text-anchor","middle").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/2.5)).attr("stroke","#FFF").attr("stroke-width","2px").attr("fill","#595").attr("paint-order","stroke").classed("atom-id",true).text(r.display_id);if(r.charge!==0){let t=r.charge;if(t<0){t=t===-1?"-":t+"-"}else{t=t===+1?"+":t+"+"}s.append("text").attr("dx",+1*Math.ceil(e/3)).attr("dy",-1*Math.ceil(e/4.5)).attr("text-anchor","left").attr("font-family","sans-serif").attr("fill",r.color()).attr("font-size",Math.ceil(e/3)).text(t)}if(r.mass!==0){s.append("text").attr("dx",-2*Math.ceil(e/3)).attr("dy",-1*Math.ceil(e/4.5)).attr("text-anchor","left").attr("font-family","sans-serif").attr("font-size",Math.ceil(e/3)).attr("fill",r.color()).text(r.mass)}})};const n=function(t,e,n,i){return Math.sqrt((n-t)*(n-t)+(i-e)*(i-e))};e.prototype.create_bond_functions=function(){const t=this.x_scale;const e=this.y_scale;this.plainBond=d3v7.svg.line().interpolate(function(t){let e=t[0][0]+","+t[0][1];for(let n=1;n<t.length;n++){if(n%2===0){e+="M"+t[n][0]+","+t[n][1]}else{e+="L"+t[n][0]+","+t[n][1]}}return e}).x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.wedgeBond=d3v7.svg.line().x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.hashBond=d3v7.svg.line().interpolate(function(t){let e=t[0][0]+","+t[0][1];for(let n=1;n<t.length;n++){if(n%2===0){e+="M"+t[n][0]+","+t[n][1]}else{e+="L"+t[n][0]+","+t[n][1]}}return e}).x(function(e){return t(e[0])}).y(function(t){return e(t[1])});this.wigglyBond=d3v7.svg.line().interpolate("cardinal").x(function(e){return t(e[0])}).y(function(t){return e(t[1])})};AtomColors={H:"#000000",He:"#FFC0CB",Li:"#B22222",B:"#00FF00",C:"#000000",N:"#8F8FFF",O:"#F00000",F:"#DAA520",Na:"#0000FF",Mg:"#228B22",Al:"#808090",Si:"#DAA520",P:"#FFA500",S:"#FFC832",Cl:"#00FF00",Ca:"#808090",Ti:"#808090",Cr:"#808090",Mn:"#808090",Fe:"#FFA500",Ni:"#A52A2A",Cu:"#A52A2A",Zn:"#A52A2A",Br:"#A52A2A",Ag:"#808090",I:"#A020F0",Ba:"#FFA500",Au:"#DAA520"};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
776n.selectAll(".atom").classed("selected",false);t.forEach(function(t){n.select('.atom[data-atom-id="'+t.id+'"]').classed("selected",true)});e.add_partially_selected_highlighting(t)}}});e.prototype.add_partially_selected_highlighting=function(e){const n=this;const i=this.container;i.selectAll(".atom").classed("selected-partially",false);if(n.nmr_1H()){const r=n.hydrogens_from_atoms(e);let s=r.map(function(t){return t.bonded_atoms(1)});s=new t.SVSet(s).unique();s.forEach(function(t){let e=true;const n=t.bonded_Hs();n.forEach(function(t){if(!r.contains(t)){e=false}});if(!e){i.select('.atom[data-atom-id="'+t.id+'"]').classed("selected-partially",true)}})}};e.prototype.read_data=function(t,e){if(e=="mol"){this.read_mol(t)}else if(e=="nmrml"){this.read_nmrml(t)}else{console.log("Format not recognized: "+e+". Must be one of the following: nmrml, mol")}};e.prototype.read_nmrml=function(e){const n=this;if(!window.X2JS){console.log("X2JS needs to be installed to read nmrML: https://github.com/abdmob/x2js");return}const s=new X2JS;const o=s.xml_str2json(e);this.data=e;this._atoms=new t.SVSet;this._bonds=new t.SVSet;if(!(o.structure&&o.structure.atomList&&o.structure.atomList.atom&&Array.isArray(o.structure.atomList.atom))){console.log("nmrML not formatted correctly: no atoms found");return}if(!(o.structure&&o.structure.bondList&&o.structure.bondList.bond&&Array.isArray(o.structure.bondList.bond))){console.log("nmrML not formatted correctly: no bonds found");return}o.structure.atomList.atom.forEach(function(t,e){const r=new i({id:t._id.replace(/\D/g,""),x:parseFloat(t._x),y:parseFloat(t._y),symbol:t._elementType,number:e+1});r.display_id=r.id;n._atoms.push(r)});
776o.structure.bondList.bond.forEach(function(t){const e=t._atomRefs.split(/\s+/);const i=n.atoms(e[0].replace(/\D/g,""));const s=n.atoms(e[1].replace(/\D/g,""));const o=new r({a1:i,a2:s,order:parseInt(t._order)});n._bonds.push(o);i._bonds.push(o);s._bonds.push(o);i._bonded_atoms.push(s);s._bonded_atoms.push(i)});if(this.use_jsmol)this.generate_molfile(o);n.draw()};e.prototype.generate_molfile=function(t){let e=this;let n=function(t){let e=" ";if(typeof t==="undefined"){e+=" 0.0000"}else{t=parseFloat(t).toFixed(4);if(t>=0)e+=" ";if(Math.abs(t)<10)e+=" ";e+=`${t}`}return e};e.mol_file=`\nJSpectraViewer\n\n ${t.structure.atomList.atom.length} ${t.structure.bondList.bond.length} 0 0 0 0 0 0 0 0999 V2000`;t.structure.atomList.atom.forEach(function(t){e.mol_file+=`\n${n(t._x)}${n(t._y)}${n(t._z)}`;e.mol_file+=` ${t._elementType} 0 0 0 0 0 0 0 0 0 0 0 0`});t.structure.bondList.bond.forEach(function(t){let n=t._atomRefs.split(/\s+/);const i=parseInt(n[0].replace(/\D/g,""));const r=parseInt(n[1].replace(/\D/g,""));e.mol_file+=i<10?`\n ${i}`:`\n ${i}`;e.mol_file+=r<10?` ${r}`:` ${r}`;e.mol_file+=` ${t._order} 0 0 0 0`});e.mol_file+="\nM END";return};e.prototype.read_mol=function(e){let n;const s=this;const o=e.split(/\r\n|\n/),a=o[3].match(/\d+/g),l=parseFloat(a[0]),c=parseFloat(a[1]);const u=4;this.title=o[1];this.data=e;this._atoms=new t.SVSet;this._bonds=new t.SVSet;for(let t=u;t<l+u;t++){let e=o[t].match(/-*\d+\.\d+|\w+/g);e=new i({x:parseFloat(e[0]),y:parseFloat(e[1]),symbol:e[3],number:t-u+1,mass:0,charge:0});e.id=e.number;e.display_id=e.number;this._atoms.push(e)}for(let t=l+u;t<l+c+u;t++){let e=o[t].match(/\d+/g);const n=this.atoms(parseInt(e[0]));const i=this.atoms(parseInt(e[1]));e=new r({a1:n,a2:i,order:parseInt(e[2]),stereo:parseInt(e[3])});this._bonds.push(e);n._bonds.push(e);i._bonds.push(e);n._bonded_atoms.push(i);i._bonded_atoms.push(n)}for(let t=l+c+u;t<o.length;t++){if(o[t].indexOf("M ISO")!==-1){n=o[t].match(/-*\d+/g);for(let t=0,e=1;t<n[0];t++,e+=2){this.atoms(n[e]).mass=parseInt(n[e+1],10)}}else if(o[t].indexOf("M CHG")!==-1){n=o[t].match(/-*\d+/g);for(let t=0,e=1;t<n[0];t++,e+=2){atoms[n[e]-1].charge=parseInt(n[e+1],10);this.atoms(n[e]).charge=parseInt(n[e+1],10)}}}s.draw()};e.prototype.loadJsmolScript=function(t,e){let n=document.createElement("script");n.type="text/javascript";if(n.readyState){n.onreadystatechange=function(){if(n.readyState==="loaded"||n.readyState==="complete"){n.onreadystatechange=null;e()}}}else{n.onload=function(){e()}}n.src=t;document.getElementsByTagName("head")[0].appendChild(n)};e.prototype.atom_picked=function(){let e=window.sv;let n=e.assignment_table;let i=window.sv.structure;let r=arguments[2]+1;let s=new t.SVSet(i.atoms(r));let o=new t.SVSet;Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${r}; colour halos blue;`);let a=n.cluster_from_atoms(s);if(a){o=a.peaks();s=a.atoms()}e.selection._elements=o.unique();e.draw();n.selected_peaks=o;n.selected_atoms=i.LCA_from_nmr_atoms(s);
776n.table.selectAll("tbody tr").classed("selected",false);if(a){n.table.select("tbody tr[data-cluster-path-id="+a.path_id()+"]").classed("selected",true)}};e.prototype.run_jsmol=function(){let t=this.container;let e=parseFloat(t.style("width"))-10,n=parseFloat(t.style("height"))-30;let i="INLINE";let r=`labels off; select ${this.nmr_nucleus==="13C"?"carbon":"hydrogen"}; label %a;`;let s=this.show_hydrogen?"set showHydrogens TRUE;":"set showHydrogens FALSE;";let o="background white;";let a='set PickCallback "sv.structure.atom_picked";';let l=this.mol_file;let c={width:e,height:n,debug:false,color:"#EAF0F2",use:"HTML5",j2sPath:"/jsmol/j2s",multipleBondSpacing:.9,zoomlarge:true,allowJavaScript:true};c.script="load "+i+' "'+l+'"; color labels black; font labels 20; set antialiasDisplay; wireframe 15; spacefill 55; select carbon; halos on; colour halos grey;'+r+s+o+a;$("#view-3d").html(Jmol.getAppletHtml("jmol_jspectraviewer",c));this.atom_picked()};e.prototype.draw=function(){let t=this;this.graph=this.initSVG();this.avgL=0;if(!this.use_jsmol){this.drawBonds();this.drawAtoms();this.addInteractivity()}else{this.container.append("div").attr("id","view-3d").attr("style","position: relative; z-index: 0;");try{t.run_jsmol()}catch(e){t.loadJsmolScript("/jsmol/JSmol.min.js",function(){t.run_jsmol();t.initialize_jsmol_atom_picking()})}}this.toggleH(this.show_hydrogen);this.toggleAtomNumbers(this.show_atom_numbers)};e.prototype.initialize_jsmol_atom_picking=function(){};e.prototype.atoms=function(t){return this._atoms.get(t)};e.prototype.bonds=function(t){return this._bonds.get(t)};e.prototype.addInteractivity=function(){const t=this;const e=this.container;e.on("mouseenter",function(){e.selectAll(".atom").style("cursor","default");if(t.nmr_1H()){e.selectAll(".atom.nmr-1h").classed("highlight",true).style("cursor","pointer")}else if(t.nmr_13C()){e.selectAll(".atom.nmr-13c").classed("highlight",true).style("cursor","pointer")}});e.on("mouseleave",function(){e.selectAll(".atom").classed("highlight",false)});e.selectAll(".atom").on("click",function(){const e=d3v7.select(this).attr("data-atom-id");let n;if(e){n=t.atoms(e);if(t.nmr_1H()){t.select_clicked_atoms_for_1H_nmr(n,d3v7.event.shiftKey)}else if(t.nmr_13C()){t.select_clicked_atoms_for_13C_nmr(n,d3v7.event.shiftKey)}}t.trigger("structure-click");d3v7.event.stopPropagation()});e.on("click",function(){t.selected_atoms=[];t.trigger("structure-click")})};e.prototype.select_clicked_atoms_for_1H_nmr=function(e,n){const i=this;let r=this.selected_atoms;if(n){window.getSelection().removeAllRanges();if(r.contains(e)){if(e.is("H")){const t=e.bonded_atoms(1);r=r.remove(t).remove(e)}else{e.bonded_Hs().forEach(function(t){r=r.remove(t)});r=r.remove(e)}}else{r.push(e)}}else{r=new t.SVSet(e)}i.selected_atoms=r};e.prototype.select_clicked_atoms_for_13C_nmr=function(e,n){const i=this;let r=this.selected_atoms;if(n){window.getSelection().removeAllRanges();if(r.contains(e)){r=r.remove(e)}else{r.push(e)}}else{r=new t.SVSet(e)}i.selected_atoms=r};e.prototype.toggleH=function(t){this.show_hydrogen=t===undefined?!this.show_hydrogen:t;if(this.show_hydrogen){d3v7.selectAll(".atom-H, .bond-H").style("display","inline");this.button_toggle_H.classed("button-on",true);this.button_toggle_H.text("Hide H");if(typeof Jmol!=="undefined")Jmol.script(jmol_jspectraviewer,"select all; set showHydrogens TRUE;")}else{d3v7.selectAll(".atom-H, .bond-H").style("display","none");this.button_toggle_H.classed("button-on",false);this.button_toggle_H.text("Show H");if(typeof Jmol!=="undefined")Jmol.script(jmol_jspectraviewer,"select all; set showHydrogens FALSE;")}};e.prototype.toggleAtomNumbers=function(t){this.show_atom_numbers=t===undefined?!this.show_atom_numbers:t;if(this.show_atom_numbers){d3v7.selectAll(".atom-id").style("display","inline");this.button_toggle_numbers.classed("button-on",true);this.button_toggle_numbers.text("Hide #");if(typeof Jmol!=="undefined"){if(this.nmr_nucleus==="13C"){Jmol.script(jmol_jspectraviewer,"select carbon; labels %a;")}else{Jmol.script(jmol_jspectraviewer,"select hydrogen; labels %a;")}}}else{d3v7.selectAll(".atom-id").style("display","none");
776this.button_toggle_numbers.classed("button-on",false);this.button_toggle_numbers.text("Show #");if(typeof Jmol!=="undefined"){if(this.nmr_nucleus==="13C"){Jmol.script(jmol_jspectraviewer,"select carbon; labels %e;")}else{Jmol.script(jmol_jspectraviewer,"select hydrogen; labels %e;")}}}};e.prototype.addAtomDisplayIDs=function(){const e=this;const n=new t.SVSet(e.atoms().filter(function(t){return!t.is("H")}));n.each(function(){this.morgan_num=1});let i=new t.SVSet;let r=-1;while(r!=i.unique().length){r=i.unique().length;i=new t.SVSet;n.forEach(function(t){let e=0;t.bonded_atoms().each(function(){if(!this.is("H")){e+=this.morgan_num}});t.morgan_temp=e});n.forEach(function(t){t.morgan_num=t.morgan_temp;i.push(t.morgan_num)})}n.order_by("morgan_num",true);let s=n[0];let o=1;let a;while(s){s.display_id=o;let e=s.bonded_atoms().filter(function(t){return!t.is("H")&&t.display_id==undefined});e=new t.SVSet(e);if(e.length>0){a=e.order_by("morgan_num",true)[0]}else{a=n.find(function(t){return t.display_id==undefined})}s=a;o+=1}this.addHydrogenDisplayIDs()};e.prototype.addHydrogenDisplayIDs=function(){const t=["a","b","c","d"];this.atoms().forEach(function(e){if(e.is("H")){return}e.bonded_Hs().forEach(function(n,i){n.display_id=e.display_id+t[i]})})};e.prototype.hydrogens_from_atoms=function(e){const n=new t.SVSet;e.forEach(function(t){if(t.toString()==="Atom"){if(t.is("H")){n.push(t)}else{n.merge(t.bonded_Hs())}}});return n.unique()};e.prototype.nmr_atoms_from_atoms=function(e){const n=this;if(n.nmr_1H()){return n.hydrogens_from_atoms(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};e.prototype.LCA_from_hydrogens=function(e){const n=new t.SVSet;if(!e||e.empty()){return n}const i=this.hydrogens_from_atoms(e);let r=i.map(function(t){return t.bonded_atoms(1)});r=new t.SVSet(r).unique();r.forEach(function(e){let r=true;const s=new t.SVSet;const o=e.bonded_Hs();o.forEach(function(t){if(i.contains(t)){s.push(t)}else{r=false}});if(r){n.push(e)}else{n.merge(s)}});return n.unique()};e.prototype.LCA_from_nmr_atoms=function(e){const n=this;if(n.nmr_1H()){return n.hydrogens_from_atoms(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};e.prototype.LCA_and_hydrogens=function(t){const e=this.hydrogens_from_atoms(t);const n=this.LCA_from_hydrogens(t);return e.merge(n).unique()};e.prototype.LCA_and_nmr_atoms=function(e){const n=this;if(n.nmr_1H()){return n.LCA_and_hydrogens(e)}if(n.nmr_13C()){return new t.SVSet(e.filter(function(t){return t.is("C")})).unique()}};function i(e){e=e||{};this.x=t.default_for(e.x,0);this.y=t.default_for(e.y,0);this.id=e.id;this.symbol=t.default_for(e.symbol,0);this.index=t.default_for(e.index,0);this.number=t.default_for(e.number,1);this.mass=t.default_for(e.mass,0);this.charge=t.default_for(e.charge,0);this._bonds=new t.SVSet;this._bonded_Hs=new t.SVSet;this._bonded_atoms=new t.SVSet}i.prototype.toString=function(){return"Atom"};i.prototype.bonds=function(t){return this._bonds.get(t)};i.prototype.bonded_atoms=function(t){return this._bonded_atoms.get(t)};i.prototype.bonded_Hs=function(e){const n=this.bonded_atoms().filter(function(t){return t.is("H")});return new t.SVSet(n)};i.prototype.is=function(t){return this.symbol==t};i.prototype.isBondedTo=function(t){return this.bonded_atoms().some(function(e){return e.symbol==t})};i.prototype.color=function(){return d3v7.rgb(AtomColors[this.symbol])};function r(e){e=e||{};this.a1=e.a1;this.a2=e.a2;this.order=t.default_for(e.order,1);this.stereo=t.default_for(e.stereo,0);this._atoms=new t.SVSet([this.a1,this.a2])}r.prototype.toString=function(){return"Bond"};r.prototype.atoms=function(t){return this._atoms.get(t)};t.SVStructure=e})(JSpectraViewer);(function(t){function e(e,n={}){const i=this;this.sv=e;this.struct=e.structure;this.container_id=n.container_id;this.container=d3v7.select(this.container_id);this.table=this.container.append("table").classed("jsv-assignment-table",true);this.nmr_nucleus=t.default_for(n.nmr_nucleus,"1H");if(!window.Sortable){console.log("Sortable needs to be installed to make peaks/atoms dragable: https://github.com/RubaXa/Sortable");this.sortable=false}this.add_sv_events();if(this.struct){this.add_struct_events()}this.edit_mode=n.edit_mode}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.get_columns=function(){const t=this;const e=t.struct;const n=d3v7.format(".2f");const i=function(t,n){let i="";if(t&&t.length>0){const n=e.LCA_from_nmr_atoms(t);i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id='"+t.id+"'>"+t.display_id+"</div>"}).join("")}else if(n&&n.length>0){i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id=''>"+t+"</div>"}).join("")}return i};
776const r=function(t,e){return"<div class='add-atoms-container'><a class='add-atoms jsv-btn' href='javascript:void(0)'>+</a><div>"};const s=function(t){return t.reverse().map(function(t){return"<span class='jsv-badge peak-badge' data-peak-id='"+t.path_id()+"'>"+n(t.center)+"</span>"}).join("")};const o=[{heading:"Row No.","class":"cluster-number center",html:function(t){return t.number}},{heading:"Cluster Midpoint","class":"center",html:function(t){return n(t.center)}},{heading:"No. Peaks","class":"center",html:function(t){return t.peak_num}},{heading:"Coupling Type","class":"center",html:function(t){return t.multiplet_type}},{heading:"No. H's","class":"center",html:function(t){return t.atoms.length}},{heading:"Atom No.","class":"atom-cell",html:function(t){return i(t.atoms,t.atom_refs)}},{heading:"","class":"add-atom-cell",html:function(t,e){return r(t.atoms,e)}},{heading:"Peak Centers (ppm)","class":"peak-cell",html:function(t){return s(t.peaks)}}];if(t.nmr_13C()){o[4].heading="No. C's"}if(!e){o.splice(4,3)}return o};e.prototype.update_table_header=function(){this.table.select("thead").remove();this.table.append("thead").append("tr").append("th").attr("class","center").attr("style","font-size: larger").attr("colspan",this.columns.length).text("Assignment Table");this.table.select("thead").append("tr").selectAll("th").data(this.columns).enter().append("th").attr("class",function(t){return t["class"]}).text(function(t){return t.heading})};e.prototype.update_table=function(){const t=this;const e=this.struct;const n=this.table;const i=this.columns;rows=[];this.sv._cluster_navigation.static_compounds=this.sv.compounds();this.sv.clusters().each(function(t){row={path_id:this.path_id(),number:t+1,center:this.center(),peak_num:this.peaks().length,peaks:this.peaks(),multiplet_type:this.multiplet_type,atoms:this.atoms(),atom_refs:this.atom_refs};rows.push(row)});n.select("tbody").remove();if(rows.length>0){n.append("tbody").selectAll("tr").data(rows).enter().append("tr").attr("data-cluster-path-id",function(t){return t.path_id}).selectAll("td").data(function(t,e){return i.map(function(n){const i={};Object.keys(n).forEach(function(r){i[r]=typeof n[r]=="function"?n[r](t,e):n[r]});return i})}).enter().append("td").html(function(t){return t.html}).attr("class",function(t){return t["class"]})}else{n.append("tbody").append("tr").append("td").attr("colspan",i.length).style("text-align","center").html("No Clusters")}this.add_table_events();d3v7.selectAll(".atom-badge").each(function(){const t=d3v7.select(this);const n=e.atoms(t.text());if(n){t.classed("atom-badge-symbol-"+n.symbol,true)}});if(t.edit_mode){this.make_sortable()}else{n.selectAll(".add-atoms").style("display","none")}};e.prototype.make_sortable=function(){const e=this;const n=this.table;const i=this.struct;n.classed("editable",true);n.selectAll("tbody tr .atom-cell").each(function(){Sortable.create(this,{draggable:".atom-badge",group:"atoms",animation:150,ghostClass:"badge-ghost",onAdd:function(n){let r;const s=e.cluster_from_table_child(n.item);const o=e.cluster_from_table_child(n.from);const a=d3v7.select(n.item).attr("data-atom-id");if(a){r=i.atoms(a)}if(r&&s&&o){const n=i.nmr_atoms_from_atoms([r]);atoms=s.atoms().merge(n).unique();s._atoms=atoms;o._atoms=new t.SVSet(o._atoms.filter(function(t){return!n.contains(t)}));e.update_table()}e.select_peaks_and_atoms(e.selected_atoms)},onEnd:function(n){const r=d3v7.select(n.item).attr("data-atom-id");if(r){atom=i.atoms(r);e.selected_atoms=new t.SVSet(atom);e.select_peaks_and_atoms(e.selected_atoms)}}})});n.selectAll("tbody tr td.peak-cell").each(function(){Sortable.create(this,{draggable:".peak-badge",group:"peaks",animation:150,ghostClass:"badge-ghost",onAdd:function(t){let n;const i=e.cluster_from_table_child(t.item);const r=e.cluster_from_table_child(t.from);const s=d3v7.select(t.item).attr("data-peak-id");if(s){n=sv.peaks(s)}if(n&&i&&r){n["delete"]();i.add_peak(n);i.update();if(sv._cluster_navigation){sv._cluster_navigation.update_table()}e.update_table()}e.select_peaks_and_atoms(e.selected_peaks)},onEnd:function(n){const i=d3v7.select(n.item).attr("data-peak-id");if(i){peak=sv.peaks(i);e.selected_peaks=new t.SVSet(peak);e.select_peaks_and_atoms(e.selected_peaks)}}})})};e.prototype.add_table_events=function(){const e=this;const n=this.table;const i=this.sv;const r=this.struct;n.selectAll("tbody tr").on("click",function(){n.selectAll("tbody tr").classed("selected",fal
776se);d3v7.select(this).classed("selected",true);const t=d3v7.select(this).attr("data-cluster-path-id");const r=i.clusters(t);e.select_peaks_and_atoms(r);i.move_to_peaks(r.peaks(),i._cluster_navigation.speed,2)});n.selectAll("tbody .atom-badge").on("click",function(){let n=e.selected_atoms;const s=d3v7.select(this).attr("data-atom-id");const o=r.atoms(s);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(o)){n=n.remove(o)}else{n.push(o)}}else{n=new t.SVSet(o)}e.selected_atoms=n;e.select_peaks_and_atoms(e.selected_atoms);i.move_to_peaks(e.cluster_from_atoms(e.selected_atoms).peaks(),i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody .peak-badge").on("click",function(){let n=e.selected_peaks;const r=d3v7.select(this).attr("data-peak-id");const s=i.peaks(r);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(s)){n=n.remove(s)}else{n.push(s)}}else{n=new t.SVSet(s)}e.selected_peaks=n;e.select_peaks_and_atoms(e.selected_peaks);i.move_to_peaks(e.selected_peaks,i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody tr .add-atoms").on("click",function(){const t=e.cluster_from_table_child(this);if(t){t._atoms=r.nmr_atoms_from_atoms(r.selected_atoms)}d3v7.event.stopPropagation();e.update_table();e.select_peaks_and_atoms(t);return false})};e.prototype.add_sv_events=function(){const t=this;const e=t.struct;const n=t.sv;n.on("adjust-end.assign",function(){t.update_table();t.select_peaks_and_atoms(n.selection.peaks())});n.on("adjust-peak-created.assign",function(t){const n=t.cluster();if(n.peaks().length==1){n._atoms=e.nmr_atoms_from_atoms(e.selected_atoms)}});n.on("selection-add.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-remove.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-clear.assign",function(){t.select_peaks_and_atoms(undefined)})};e.prototype.add_struct_events=function(){const t=this;const e=this.struct;e.on("structure-click.assign",function(){e.selected_atoms=e.LCA_and_nmr_atoms(e.selected_atoms);t.select_peaks_and_atoms(e.selected_atoms)})};e.prototype.select_peaks_and_atoms=function(e){const n=this;const i=this.sv;const r=this.struct;const s=this.table;let o;let a=new t.SVSet;let l=new t.SVSet;if(e){if(e.toString()=="Cluster"){o=e}else if(e.toString()=="SVSet"||Array.isArray(e)){const t=e[0];if(t){if(e[0].toString()=="Atom"){l=e}else if(e[0].toString()=="Peak"){a=e}}}else{console.log("Unknown Selection")}}if(a.present()){o=this.cluster_from_peaks(a)}if(l.present()){o=this.cluster_from_atoms(l)}if(o){a=o.peaks();l=o.atoms()}if(r){if(r.use_jsmol&&typeof Jmol!=="undefined"){if(r.nmr_1H()){let t=r.LCA_from_hydrogens(l);Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${t[0].id.replace(/\D/g,"")}; colour halos blue;`)}else{Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${l[0].id.replace(/\D/g,"")}; colour halos blue;`)}}else{r.selected_atoms=r.LCA_and_nmr_atoms(l)}}i.selection._elements=a.unique();i.draw();n.selected_peaks=a;if(r){n.selected_atoms=r.LCA_from_nmr_atoms(l)}
776s.selectAll("tbody tr").classed("selected",false);if(o){s.select("tbody tr[data-cluster-path-id="+o.path_id()+"]").classed("selected",true)}};e.prototype.cluster_from_peaks=function(t){let e;this.sv.clusters().forEach(function(n){if(n.peaks().equals(t)){e=n}});return e};e.prototype.cluster_from_atoms=function(t){let e;const n=this.struct;const i=n.nmr_atoms_from_atoms(t);this.sv.clusters().forEach(function(t){const r=n.nmr_atoms_from_atoms(t.atoms());if(r.equals(i)){e=t}});return e};e.prototype.cluster_from_table_child=function(t){if(!t){return}let e;let n=false;let i=t;while(!n){localName=i.localName.toUpperCase();if(localName=="TR"){n=true;const t=d3v7.select(i).attr("data-cluster-path-id");if(t){e=this.sv.clusters(t)}}else if(localName=="TABLE"){n=true}else{i=i.parentNode;if(!i){n=true}}}return e};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom-badge.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.struct.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
776n.selectAll(".atom-badge").classed("selected",false);t.forEach(function(t){n.selectAll('.atom-badge[data-atom-id="'+t.id+'"]').classed("selected",true)})}},selected_peaks:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".peak-badge.selected").each(function(){const t=d3v7.select(this).attr("data-peak-id");n.push(e.sv.peaks(t))});return n},set:function(t){const e=this;const n=this.container;n.selectAll(".peak-badge").classed("selected",false);t.forEach(function(t){ 777n.select('.peak-badge[data-peak-id="'+t.path_id()+'"]').classed("selected",true)})}},edit_mode:{get:function(){return this._edit_mode},set:function(t){const e=this;const n=e.sv;e._edit_mode=t;if(e._edit_mode){n.selection.element_type="peak";n.selection.allow_multiselect=true;n.selection.allow_adjust=true;n.selection.allow_width_adjust=true;n.selection.allow_peak_creation=true;if(n.highlight)n.highlight.element_type="peak"}else{n.selection.element_type="cluster";n.selection.allow_multiselect=true;n.selection.allow_adjust=false;n.selection.allow_width_adjust=false;n.selection.allow_peak_creation=false;if(n.highlight)n.highlight.element_type="cluster"}e.update_table();e.select_peaks_and_atoms(n.selection.peaks());n.draw()}},nmr_nucleus:{get:function(){return this._nmr_nucleus},set:function(t){this._nmr_nucleus=t;this.columns=this.get_columns();if(this.struct)this.struct.nmr_nucleus=t;this.update_table_header();this.update_table()}}});t.SVAssignments=e})(JSpectraViewer);(function(t){function e(t,e={}){const n=this;this.sv=t;this.struct=t.structure;this.container_id=e.container_id;this.container=d3v7.select(this.container_id);this.table=this.container.append("table").classed("jsv-assignment-table",true);this.nmr_nucleus="2D";if(!window.Sortable){console.log("Sortable needs to be installed to make peaks/atoms dragable: https://github.com/RubaXa/Sortable");this.sortable=false}this.add_sv_events();if(this.struct){this.add_struct_events()}this.edit_mode=e.edit_mode}e.prototype.nmr_1H=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="1H"};e.prototype.nmr_13C=function(){return this.nmr_nucleus&&this.nmr_nucleus.toUpperCase()=="13C"};e.prototype.get_columns=function(){const t=this;const e=t.struct;const n=d3v7.format(".2f");const i=function(t,n){let i="";if(t&&t.length>0){const n=e.LCA_from_nmr_atoms(t);i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id='"+t.id+"'>"+t.display_id+"</div>"}).join("")}else if(n&&n.length>0){i=n.map(function(t){return"<div class='jsv-badge atom-badge' data-atom-id=''>"+t+"</div>"}).join("")}return i};const r=function(t,e){return"<div class='add-atoms-container'><a class='add-atoms jsv-btn' href='javascript:void(0)'>+</a><div>"};const s=function(t){return t.reverse().map(function(t){return"<span class='jsv-badge peak-badge' data-peak-id='"+t.path_id()+"'>"+n(t.center)+"</span>"}).join("")};const o=[{heading:"Row No.","class":"cluster-number center",html:function(t){return t.number}},{heading:"Dir. Dim. Center","class":"center",html:function(t){return n(t.peaks[0])}},{heading:"Indir. Dim. Center","class":"center",html:function(t){return n(t.peaks[1])}},{heading:"Coupling Type","class":"center",html:function(t){return t.multiplet_type}},{heading:"Dir. Dim. Atom No.","class":"atom-cell center",html:function(t){return i(t.atoms,t.dir_dim_atom_refs)}},{heading:"Indir. Dim. Atom No.","class":"atom-cell center",html:function(t){return i(t.atoms,t.indir_dim_atom_refs)}}];return o};e.prototype.update_table_header=function(){this.table.select("thead").remove();this.table.append("thead").append("tr").append("th").attr("class","center").attr("style","font-size: larger").attr("colspan",this.columns.length).text("Assignment Table");this.table.select("thead").append("tr").selectAll("th").data(this.columns).enter().append("th").attr("class",function(t){return t["class"]}).text(function(t){return t.heading})};e.prototype.update_table=function(){const t=this;const e=this.struct;const n=this.table;const i=this.columns;rows=[];this.sv._cluster_navigation.static_compounds=this.sv.compounds();this.sv.clusters().each(function(t){row={path_id:this.path_id(),number:t+1,center:this.center(),peak_num:this.peaks().length,peaks:this.peaks(),multiplet_type:this.multiplet_type,atoms:this.atoms(),dir_dim_atom_refs:this.dir_dim_atom_refs(),indir_dim_atom_refs:this.indir_dim_atom_refs()};rows.push(row)});n.select("tbody").remove();if(rows.length>0){n.append("tbody").selectAll("tr").data(rows).enter().append("tr").attr("data-cluster-path-id",function(t){return t.path_id}).selectAll("td").data(function(t,e){return i.map(function(n){const i={};
777Object.keys(n).forEach(function(r){i[r]=typeof n[r]=="function"?n[r](t,e):n[r]});return i})}).enter().append("td").html(function(t){return t.html}).attr("class",function(t){return t["class"]})}else{n.append("tbody").append("tr").append("td").attr("colspan",i.length).style("text-align","center").html("No Clusters")}this.add_table_events();d3v7.selectAll(".atom-badge").each(function(){const t=d3v7.select(this);const n=e.atoms(t.text());if(n){t.classed("atom-badge-symbol-"+n.symbol,true)}});if(t.edit_mode){this.make_sortable()}else{n.selectAll(".add-atoms").style("display","none")}};e.prototype.make_sortable=function(){const e=this;const n=this.table;const i=this.struct;n.classed("editable",true);n.selectAll("tbody tr .atom-cell").each(function(){Sortable.create(this,{draggable:".atom-badge",group:"atoms",animation:150,ghostClass:"badge-ghost",onAdd:function(n){let r;const s=e.cluster_from_table_child(n.item);const o=e.cluster_from_table_child(n.from);const a=d3v7.select(n.item).attr("data-atom-id");if(a){r=i.atoms(a)}if(r&&s&&o){const n=i.nmr_atoms_from_atoms([r]);atoms=s.atoms().merge(n).unique();s._atoms=atoms;o._atoms=new t.SVSet(o._atoms.filter(function(t){return!n.contains(t)}));e.update_table()}e.select_peaks_and_atoms(e.selected_atoms)},onEnd:function(n){const r=d3v7.select(n.item).attr("data-atom-id");if(r){atom=i.atoms(r);e.selected_atoms=new t.SVSet(atom);e.select_peaks_and_atoms(e.selected_atoms)}}})});n.selectAll("tbody tr td.peak-cell").each(function(){Sortable.create(this,{draggable:".peak-badge",group:"peaks",animation:150,ghostClass:"badge-ghost",onAdd:function(t){let n;const i=e.cluster_from_table_child(t.item);const r=e.cluster_from_table_child(t.from);const s=d3v7.select(t.item).attr("data-peak-id");if(s){n=sv.peaks(s)}if(n&&i&&r){n["delete"]();i.add_peak(n);i.update();if(sv._cluster_navigation){sv._cluster_navigation.update_table()}e.update_table()}e.select_peaks_and_atoms(e.selected_peaks)},onEnd:function(n){const i=d3v7.select(n.item).attr("data-peak-id");if(i){peak=sv.peaks(i);e.selected_peaks=new t.SVSet(peak);e.select_peaks_and_atoms(e.selected_peaks)}}})})};e.prototype.add_table_events=function(){const e=this;const n=this.table;const i=this.sv;const r=this.struct;n.selectAll("tbody tr").on("click",function(){n.selectAll("tbody tr").classed("selected",fal
777se);d3v7.select(this).classed("selected",true);const t=d3v7.select(this).attr("data-cluster-path-id");const r=i.clusters(t);e.select_peaks_and_atoms(r);i.move_to_peaks(r.peaks(),i._cluster_navigation.speed,2)});n.selectAll("tbody .atom-badge").on("click",function(){let n=e.selected_atoms;const s=d3v7.select(this).attr("data-atom-id");const o=r.atoms(s);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(o)){n=n.remove(o)}else{n.push(o)}}else{n=new t.SVSet(o)}e.selected_atoms=n;e.select_peaks_and_atoms(e.selected_atoms);i.move_to_peaks(e.cluster_from_atoms(e.selected_atoms).peaks(),i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody .peak-badge").on("click",function(){let n=e.selected_peaks;const r=d3v7.select(this).attr("data-peak-id");const s=i.peaks(r);if(d3v7.event.shiftKey){window.getSelection().removeAllRanges();if(n.contains(s)){n=n.remove(s)}else{n.push(s)}}else{n=new t.SVSet(s)}e.selected_peaks=n;e.select_peaks_and_atoms(e.selected_peaks);i.move_to_peaks(e.selected_peaks,i._cluster_navigation.speed,2);d3v7.event.stopPropagation()});n.selectAll("tbody tr .add-atoms").on("click",function(){const t=e.cluster_from_table_child(this);if(t){t._atoms=r.nmr_atoms_from_atoms(r.selected_atoms)}d3v7.event.stopPropagation();e.update_table();e.select_peaks_and_atoms(t);return false})};e.prototype.add_sv_events=function(){const t=this;const e=t.struct;const n=t.sv;n.on("adjust-end.assign",function(){t.update_table();t.select_peaks_and_atoms(n.selection.peaks())});n.on("adjust-peak-created.assign",function(t){const n=t.cluster();if(n.peaks().length==1){n._atoms=e.nmr_atoms_from_atoms(e.selected_atoms)}});n.on("selection-add.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-remove.assign",function(){t.select_peaks_and_atoms(n.selection.peaks())});n.on("selection-clear.assign",function(){t.select_peaks_and_atoms(undefined)})};e.prototype.add_struct_events=function(){const t=this;const e=this.struct;e.on("structure-click.assign",function(){e.selected_atoms=e.LCA_and_nmr_atoms(e.selected_atoms);t.select_peaks_and_atoms(e.selected_atoms)})};e.prototype.select_peaks_and_atoms=function(e){const n=this;const i=this.sv;const r=this.struct;const s=this.table;let o;let a=new t.SVSet;let l=new t.SVSet;if(e){if(e.toString()=="Cluster"){o=e}else if(e.toString()=="SVSet"||Array.isArray(e)){const t=e[0];if(t){if(e[0].toString()=="Atom"){l=e}else if(e[0].toString()=="Peak"){a=e}}}else{console.log("Unknown Selection")}}if(a.present()){o=this.cluster_from_peaks(a)}if(l.present()){o=this.cluster_from_atoms(l)}if(o){a=o.peaks();l=o.atoms()}if(r){if(r.use_jsmol&&typeof Jmol!=="undefined"){if(r.nmr_1H()){let t=r.LCA_from_hydrogens(l);Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${t[0].id.replace(/\D/g,"")}; colour halos blue;`)}else{Jmol.script(jmol_jspectraviewer,`select carbon; colour halos grey; select atomno = ${l[0].id.replace(/\D/g,"")}; colour halos blue;`)}}else{r.selected_atoms=r.LCA_and_nmr_atoms(l)}}i.selection._elements=a.unique();i.draw();n.selected_peaks=a;if(r){n.selected_atoms=r.LCA_from_nmr_atoms(l)}
777s.selectAll("tbody tr").classed("selected",false);if(o){s.select("tbody tr[data-cluster-path-id="+o.path_id()+"]").classed("selected",true)}};e.prototype.cluster_from_peaks=function(t){let e;this.sv.clusters().forEach(function(n){if(n.peaks().equals(t)){e=n}});return e};e.prototype.cluster_from_atoms=function(t){let e;const n=this.struct;const i=n.nmr_atoms_from_atoms(t);this.sv.clusters().forEach(function(t){const r=n.nmr_atoms_from_atoms(t.atoms());if(r.equals(i)){e=t}});return e};e.prototype.cluster_from_table_child=function(t){if(!t){return}let e;let n=false;let i=t;while(!n){localName=i.localName.toUpperCase();if(localName=="TR"){n=true;const t=d3v7.select(i).attr("data-cluster-path-id");if(t){e=this.sv.clusters(t)}}else if(localName=="TABLE"){n=true}else{i=i.parentNode;if(!i){n=true}}}return e};Object.defineProperties(e.prototype,{selected_atoms:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".atom-badge.selected").each(function(){const t=d3v7.select(this).attr("data-atom-id");n.push(e.struct.atoms(t))});return n},set:function(t){const e=this;const n=this.container;
777n.selectAll(".atom-badge").classed("selected",false);t.forEach(function(t){n.selectAll('.atom-badge[data-atom-id="'+t.id+'"]').classed("selected",true)})}},selected_peaks:{get:function(){const e=this;const n=new t.SVSet;this.container.selectAll(".peak-badge.selected").each(function(){const t=d3v7.select(this).attr("data-peak-id");n.push(e.sv.peaks(t))});return n},set:function(t){const e=this;const n=this.container;n.selectAll(".peak-badge").classed("selected",false);t.forEach(function(t){n.select('.peak-badge[data-peak-id="'+t.path_id()+'"]').classed("selected",true)})}},edit_mode:{get:function(){return this._edit_mode},set:function(t){const e=this;const n=e.sv;e._edit_mode=t;if(e._edit_mode){n.selection.element_type="peak";n.selection.allow_multiselect=true;n.selection.allow_adjust=true;n.selection.allow_width_adjust=true;n.selection.allow_peak_creation=true;if(n.highlight)n.highlight.element_type="peak"}else{n.selection.element_type="cluster";n.selection.allow_multiselect=true;n.selection.allow_adjust=false;n.selection.allow_width_adjust=false;n.selection.allow_peak_creation=false;if(n.highlight)n.highlight.element_type="cluster"}e.update_table();n.draw()}},nmr_nucleus:{get:function(){return this._nmr_nucleus},set:function(t){this._nmr_nucleus=t;this.columns=this.get_columns();if(this.struct)this.struct.nmr_nucleus=t;this.update_table_header();this.update_table()}}});t.SVAssignments2D=e})(JSpectraViewer);JSpectraViewer.initialize();(function(){on_ready(function(){var t,e,n,i,r,s,o,a,l;if($("#nmr-spectrum").length){r=d3.select("#nmr-spectrum").attr("data-path");i=d3.select("#nmr-spectrum").attr("data-nucleus");n=d3.select("#nmr-spectrum").attr("data-name");e=d3.select("#nmr-spectrum").attr("data-type");o=d3.select("#nmr-spectrum").attr("data-source");l=i==="13C"?205:11.1;s=i==="13C"?false:true;if(e==="json"){a=new JSV.SpectraViewer("#nmr-spectrum",{debug:false,width:$(".panel#spectrum .panel-body").width(),min_boundaries:{x:[-1,l],y:[-.02,1.18]},axis_y_lock:.04,legend_show:true,x_axis_label:"ppm"});a.flash("Loading...");window.sv=a;$.getJSON(r,function(t){a.add_spectrum({id:"sum_line",name:n,peak_list:t.peaks});a.spectra("sum_line").labels.update_peaks();return a.draw()})}else if(e==="nmrml"){a=new JSV.SpectraViewer("#nmr-spectrum",{width:$(".panel#spectrum .panel-body").width(),drag_drop_load:false,axis_y_lock:.04,axis_x_title:"ppm",legend_show:true,cluster_navigation_id:"#cluster-navigation",simplify_tolerance:.01,zoom_max:1e3,min_boundaries:{x:[-1,l],y:[-.02,1.18]},highlight:{restriction_spectrum_id:"Assignment",element_type:"peak",display:{fill:"rgba(238, 238, 255, 0.7)"},visible_only:false},select:{element_type:"peak",allow_multiselect:true,allow_adjust:false,allow_peak_creation:false,show_indicators:true,display:{fill:"rgba(208, 208, 255, 0.75)"}},assignment_table:{container_id:"#assignments",edit_mode:false},structure:{container_id:"#structure",show_atom_numbers:true,use_jsmol:true,show_hydrogen:s,width:400,height:400}});a.flash("Loading...");window.sv=a;$.ajax({dataType:"text",url:r,success:function(e){if(e){a.add_nmrml_data(e,o);a.reset_boundaries();$(".jsv-cluster-navigator td:first").html("Multiplets");t.trigger("resize");return a.draw()}}})}a.on("cluster-navigator-updated",function(){return $(".jsv-cluster-navigator 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862,select:function(i,r){if(r.item.value=r.item.value.toString(),-1!=r.item.value.toLowerCase().indexOf("no match")||-1!=r.item.value.toLowerCase().indexOf("too many results"))return t(this).trigger("railsAutocomplete.noMatch",r),!1;var s=n(this.value);if(s.pop(),s.push(r.item.value),null!=e.delimiter)s.push(""),this.value=s.join(e.delimiter);else if(this.value=s.join(""),t(this).attr("data-id-element")&&t(t(this).attr("data-id-element")).val(r.item.id).trigger("change"),t(this).attr("data-update-elements")){var o=r.item,a=-1!=r.item.value.indexOf("Create New")?!0:!1,l=t.parseJSON(t(this).attr("data-update-elements"));for(var c in l)"checkbox"===t(l[c]).attr("type")?o[c]===!0||1===o[c]?t(l[c]).attr("checked","checked"):t(l[c]).removeAttr("checked"):a&&o[c]&&-1==o[c].indexOf("Create New")||!a?t(l[c]).val(o[c]).trigger("change"):t(l[c]).val("").trigger("change")}var u=this.value;return t(this).bind("keyup.clearId",function(){t.trim(t(this).val())!=t.trim(u)&&(t(t(this).attr("data-id-element")).val("").trigger("change"),t(this).unbind("keyup.clearId"))}),t(e).trigger("railsAutocomplete.select",r),!1}}),t(e).trigger("railsAutocomplete.init")}}),t(document).ready(function(){t("input[data-autocomplete]").railsAutocomplete("input[data-autocomplete]")})}(jQuery);
Line numbers count LF bytes from the start of the resource, as the search results do. Vendor segments are library code the classifier recognised; they are stored but not indexed. Bytes are shown as Latin1 characters, one per byte.